>VFA730 (VFA730Q) /CSM/VF/VFA7-B/VFA730Q.Seq.d/
TATATTTTTATATATTGAATAAAATTTTAAAAAAAGAATGTCAAACAAGGTATTAATGAT
TGATGGTGATCGTATCAGTGGTAATGAAGTTAGAGCACAAAATGTTTTAGCAGTTACAGC
AATTGCAAATATAGTTAAAACATCATTTGGACCAATTGGTTTAGATAAAATGTTAATTGA
TAATATTGGATCAATTGTTGTTACCAATGATGGTGCAACCATTTTACAAAAGATTGATAT
AGAACATCCAGCAGCAGAGATTTTAGTACAATTATTCAGAATTGCAAGATCAAGAAGTTG
GTGATGGTACXXXXXXXXXXGTCTTAATCACACTTGCAAATCTCGAGGGTGAAGAATCAT
TTGATACCACCGCCTTGGGTATTGCCGATGAANTTGTTCAAGATAGATTGGCCGATGATG
AATTAATCATTGTCAAAAACTCAAATAAGAAATCAGCTTCAATCATTCTTCGTGGTGCCA
ATGAATTAATGTTGGATGAAATGGAACGTTCCATTCATGACTCTCTCTGTATCGTAAAGA
GAACTTTAGAATCTGGAACCATTGTTCCAGGTGGTGGTGCAGTTGAATCTGCCCTCTCTA
TCTATCTCGATAATATTGCCGCCACAATGGGTAGTCGTAAACAATTAGCAATCTCTGAAT
TTGCTGAATCCCTCTTGGTTGTACCAAAACAATTGGCTGTAAATGCTGCTCTTGATGCCT
CTGATTTAGTTTCAAAATTAAAAGCCTATCATCATGCCGCTCAAACTGATCCATCAAAGA
AATCTTACGCATACTCTGGTCTCGATTTATTCAATAACAAAGTTAGAAATAATTTAGAGG
CTGGTGTTTTAGAACCTGCCATTGCCAAAATCAAATGTATCAAATTTGCAACTGAAAGCG
CTATCACCATCCTTCGTATCGANATAAAATCACTCTAATCCAAGAGAACAACAAGGGGGT
ATCANA

yifiy*ikf*kknvkqgind*w*syqw**s*stkcfssysnckys*niiwtnwfr*nvn*
*ywinccyq*wcnhftkd*YRTSSSRDFSTIIQNCKIKKLVMV---

---VLITLANLEGEESFDTTALGIADEXVQDRLADDELIIVKNSNKKSASIILRGANELM
LDEMERSIHDSLCIVKRTLESGTIVPGGGAVESALSIYLDNIAATMGSRKQLAISEFAES
LLVVPKQLAVNAALDASDLVSKLKAYHHAAQTDPSKKSYAYSGLDLFNNKVRNNLEAGVL
EPAIAKIKCIKFATESAITILRIXIKSL*skrttrgyx

Frame A:
yifiy*ikf*kknvkqgind*w*syqw**s*stkcfssysnckys*niiwtnwfr*nvn*
*ywinccyq*wcnhftkd*YRTSSSRDFSTIIQNCKIKKLVMV---

---VLITLANLEGEESFDTTALGIADEXVQDRLADDELIIVKNSNKKSASIILRGANELM
LDEMERSIHDSLCIVKRTLESGTIVPGGGAVESALSIYLDNIAATMGSRKQLAISEFAES
LLVVPKQLAVNAALDASDLVSKLKAYHHAAQTDPSKKSYAYSGLDLFNNKVRNNLEAGVL
EPAIAKIKCIKFATESAITILRIXIKSL*skrttrgyx

Frame B:
iflyie*nfkkrmsnkvlmidgdrisgnevraqnvlavtaianivktsfgpigldkmlid
nigsivvtndgatilqkidiehpaaeilvqlfriarsrsw*wy---

---s*shlqisrvknhlipppwvlpmxlfkidwpmmn*slsktqirnqlqsffvvpmn*c
wmkwnvpfmtlsvs*rel*nleplfqvvvqlnlpslsisiilppqwvvvnn*qslnllnp
swlyqnnwl*mlllmpli*fqn*kpiimplklihqrnlthtlvsiysitkleii*rlvf*
nlplpksnvsnlqlkalspsfvsx*nhsnpreqqggix

Frame C:
yfyilnkilkkecqtry**lmvivsvvmklehkmf*qlqqlqi*lkhhldqlv*ikc*li
ildqlllpmmvqpfykrli*niqqqrf*ynyselqdqevgdg---

---lnhtcksrg*rii*yhrlgycr*xcsr*igr**inhcqklk*eisfnhsswcq*inv
g*ngtfhs*lslyrkenfriwnhcsrwwcs*icplylsr*ycrhng*s*tisnl*ic*ip
lgctktigckccs*cl*fsfkikslsscrsn*sikeilrilwsrfiq*qs*k*frgwcfr
tchcqnqmyqicn*kryhhpsyrxkitliqennkgvs

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFA730 (VFA730Q) /CSM/VF/VFA7-B/VFA730Q.Seq.d/                       1798   0.0
AFF451 (AFF451Q) /CSM/AF/AFF4-C/AFF451Q.Seq.d/                       1225   0.0
VFD589 (VFD589Q) /CSM/VF/VFD5-D/VFD589Q.Seq.d/                       1221   0.0
CFH434 (CFH434Q) /CSM/CF/CFH4-B/CFH434Q.Seq.d/                       1221   0.0
AFG366 (AFG366Q) /CSM/AF/AFG3-C/AFG366Q.Seq.d/                       1221   0.0
AFD439 (AFD439Q) /CSM/AF/AFD4-B/AFD439Q.Seq.d/                       1221   0.0
VFF578 (VFF578Q) /CSM/VF/VFF5-D/VFF578Q.Seq.d/                       1181   0.0
VFL307 (VFL307Q) /CSM/VF/VFL3-A/VFL307Q.Seq.d/                       1170   0.0
FC-AG03 (FC-AG03Q) /CSM/FC/FC-AG/FC-AG03Q.Seq.d/                     1140   0.0
FC-116 (FC-116Q) /CSM/CG/CG-FC/FC-116Q.Seq.d/                        1140   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AB008158|AB008158.1 Dictyostelium discoideum DdTcp-1 mRNA for t-complex polypeptide 1 homologue, complete cds.  1187  0.0  6
AL437502|AL437502.1 T3 end of clone BC0AA009G02 of library BC0AA from strain CBS 767 of Debaryomyces hansenii.    48  1e-08  3
AF143496|AF143496.1 Paleosuchus palpebrosus t-complex polypeptide 1 (TCP1) mRNA, complete cds.    38  1e-07  5
AZ530054|AZ530054.1 ENTDW96TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    52  2e-06  3
AZ526360|AZ526360.1 254PbF04 Pb MBN #21 Plasmodium berghei genomic 3', DNA sequence.    42  4e-06  3
AX488977|AX488977.1 Sequence 6277 from Patent WO02053728.         42  7e-05  3
AZ522254|AZ522254.1 204PbE04 Pb MBN #21 Plasmodium berghei genomic 3', DNA sequence.    42  9e-05  2
BF298951|BF298951.1 068PbG10 Pb cDNA #20, Charles Yowell and Jane Carlton Plasmodium berghei cDNA 5', mRNA sequence.    42  9e-05  2
BF299139|BF299139.1 069PbF12 Pb cDNA #20, Charles Yowell and Jane Carlton Plasmodium berghei cDNA 5', mRNA sequence.    42  1e-04  2
BU486528|BU486528.1 604125340F1 CSEQRBN36 Gallus gallus cDNA clone ChEST943p10 5', mRNA sequence.    38  1e-04  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB008158_1(AB008158|pid:none) Dictyostelium discoideum DdTcp-1 m...   377   e-103
AF442545_1(AF442545|pid:none) Physarum polycephalum CCT chaperon...   291   2e-77
BT002052_1(BT002052|pid:none) Arabidopsis thaliana t-complex pol...   267   4e-70
(P18279) RecName: Full=T-complex protein 1 subunit alpha;       ...   262   1e-68
AP000383_4(AP000383|pid:none) Arabidopsis thaliana genomic DNA, ...   261   2e-68
M20130_1(M20130|pid:none) Mouse t complex polypeptide 1 (Tcp-1-a...   261   3e-68
(P28480) RecName: Full=T-complex protein 1 subunit alpha;       ...   260   6e-68
EU966804_1(EU966804|pid:none) Zea mays clone 297510 unknown mRNA.     259   7e-68
AY891878_1(AY891878|pid:none) Synthetic construct Homo sapiens c...   259   7e-68
(Q4R5G2) RecName: Full=T-complex protein 1 subunit alpha;       ...   259   7e-68

 psg: 0.80  gvh: 0.62  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 12.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for VFA730 is mit

>VFA730F.Seq
TATATTTTTATATATTGAATAAAATTTTAAAAAAAGAATGTCAAACAAGGTATTAATGAT
TGATGGTGATCGTATCAGTGGTAATGAAGTTAGAGCACAAAATGTTTTAGCAGTTACAGC
AATTGCAAATATAGTTAAAACATCATTTGGACCAATTGGTTTAGATAAAATGTTAATTGA
TAATATTGGATCAATTGTTGTTACCAATGATGGTGCAACCATTTTACAAAAGATTGATAT
AGAACATCCAGCAGCAGAGATTTTAGTACAATTATTCAGAATTGCAAGATCAAGAAGTTG
GTGATGGTAC----------

>VFA730Z.Seq
----------GTCTTAATCACACTTGCAAATCTCGAGGGTGAAGAATCATTTGATACCAC
CGCCTTGGGTATTGCCGATGAANTTGTTCAAGATAGATTGGCCGATGATGAATTAATCAT
TGTCAAAAACTCAAATAAGAAATCAGCTTCAATCATTCTTCGTGGTGCCAATGAATTAAT
GTTGGATGAAATGGAACGTTCCATTCATGACTCTCTCTGTATCGTAAAGAGAACTTTAGA
ATCTGGAACCATTGTTCCAGGTGGTGGTGCAGTTGAATCTGCCCTCTCTATCTATCTCGA
TAATATTGCCGCCACAATGGGTAGTCGTAAACAATTAGCAATCTCTGAATTTGCTGAATC
CCTCTTGGTTGTACCAAAACAATTGGCTGTAAATGCTGCTCTTGATGCCTCTGATTTAGT
TTCAAAATTAAAAGCCTATCATCATGCCGCTCAAACTGATCCATCAAAGAAATCTTACGC
ATACTCTGGTCTCGATTTATTCAATAACAAAGTTAGAAATAATTTAGAGGCTGGTGTTTT
AGAACCTGCCATTGCCAAAATCAAATGTATCAAATTTGCAACTGAAAGCGCTATCACCAT
CCTTCGTATCGANATAAAATCACTCTAATCCAAGAGAACAACAAGGGGGTATCANA

>VFA730P.Seq
TATATTTTTATATATTGAATAAAATTTTAAAAAAAGAATGTCAAACAAGGTATTAATGAT
TGATGGTGATCGTATCAGTGGTAATGAAGTTAGAGCACAAAATGTTTTAGCAGTTACAGC
AATTGCAAATATAGTTAAAACATCATTTGGACCAATTGGTTTAGATAAAATGTTAATTGA
TAATATTGGATCAATTGTTGTTACCAATGATGGTGCAACCATTTTACAAAAGATTGATAT
AGAACATCCAGCAGCAGAGATTTTAGTACAATTATTCAGAATTGCAAGATCAAGAAGTTG
GTGATGGTAC----------GTCTTAATCACACTTGCAAATCTCGAGGGTGAAGAATCAT
TTGATACCACCGCCTTGGGTATTGCCGATGAANTTGTTCAAGATAGATTGGCCGATGATG
AATTAATCATTGTCAAAAACTCAAATAAGAAATCAGCTTCAATCATTCTTCGTGGTGCCA
ATGAATTAATGTTGGATGAAATGGAACGTTCCATTCATGACTCTCTCTGTATCGTAAAGA
GAACTTTAGAATCTGGAACCATTGTTCCAGGTGGTGGTGCAGTTGAATCTGCCCTCTCTA
TCTATCTCGATAATATTGCCGCCACAATGGGTAGTCGTAAACAATTAGCAATCTCTGAAT
TTGCTGAATCCCTCTTGGTTGTACCAAAACAATTGGCTGTAAATGCTGCTCTTGATGCCT
CTGATTTAGTTTCAAAATTAAAAGCCTATCATCATGCCGCTCAAACTGATCCATCAAAGA
AATCTTACGCATACTCTGGTCTCGATTTATTCAATAACAAAGTTAGAAATAATTTAGAGG
CTGGTGTTTTAGAACCTGCCATTGCCAAAATCAAATGTATCAAATTTGCAACTGAAAGCG
CTATCACCATCCTTCGTATCGANATAAAATCACTCTAATCCAAGAGAACAACAAGGGGGT
ATCANA