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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM130
Library AF
(Link to library)
Clone ID AFM130
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM130P
(Link to Original site)
Representative DNA sequence 
>AFM130 (AFM130Q) /CSM/AF/AFM1-B/AFM130Q.Seq.d/
ATTTATTTTGTAAATATACATATTACATATATATATATATATATATAGATATGAGTACCC
GTAAAGTTTCATATTTCTACGATAACGAAGTGGGAAACCATTACTATGGTCCTAACCATC
CAATGAAACCTCATCGTATGAGAATGACACACGATTTAGTTTTAAATTATGGAATATATA
AAAAGATGCAAATATTTAGACCAAGAAAAGCATCGGAATTAGAGTTAACAAACTTTCACT
CTGATGATTATATCAATTTCTTAAAACTTGTCACACCGGATAATATGCATGATTATTCAA
AACAATTAGTTAAATTTAATGTAAGGGAAGATTGCCCTGTATTTGATGGCATGTATAATT
TTTGTCAAATATCATCAGGTGGTTCAATTGGATGTGCAGTTAAAGTTAATAGTAAAGAAT
CAGATGTAGCAATTAATTGGGCTGGTGGTTTACATCATGCAAAGAAATCTGAAGCATCAG
GTTTTTGTTATACAAATGATATTGTTTTATCAATTTTAGAATTATTAAAACATCATGAAA
GAGTATTATATATTGATATTGATATTCATCAXXXXXXXXXXGTGCAGATTCATTGACAGG
TGATAGATTAGGTTGTTTCAATTTAACATTGAGAGGTCACGCTCCAATGTATCGAATTTT
TAAAGTCATTCAATGTACCATTGGTTGTATTGGGTGGTGGTGGTTATACTATTAAAAATG
TTGCACGTTGTTGGACTTATGAAACTTCGATTTTGGTGGATTCAGAATTAAAGGATGAAT
TGCCCTACAATGATTATTTAGAATATTATGGTCCAGAATATAGATTACATATCACTCCAA
ACAATATGGAGAATCAAAACACAAAAGATTACTTGGAGAAATTAAAAATTCAACTCTTGG
AAAATCTTAGAAATTTAAATCATGCTCCAGCTGCCGCTCATCATGATATACCACCTGATT
CTTTTAATTATTCTGATGACGAAGATGATGAAGATCCTGATGTTAGAATCTCTGAAGCTG
ATCGTGATAAAAAGGTACATCATCAAGGTGAATTATCTGATTCTGATGAAGAAGATGGTA
GAAGAAATTATAGTAATGGTTTAGAAGCTACTTCAACCTCAAGAAGAAATCAAGTTTCAA
TTTCTGCTTATGATAAAGAAAGACCATCTTATAATAGTAGAAATAATAATAATAATAACA
ATAATAATAATAATAATAATAATAATAATAATAATAATAGTAATAATAATAANAGTCATC
ATCATAATGAAGATGCNG
sequence update 2009. 4. 3
Translated Amino Acid sequence 
LFCKYTYYIYIYIYIDMSTRKVSYFYDNEVGNHYYGPNHPMKPHRMRMTHDLVLNYGIYK
KMQIFRPRKASELELTNFHSDDYINFLKLVTPDNMHDYSKQLVKFNVREDCPVFDGMYNF
CQISSGGSIGCAVKVNSKESDVAINWAGGLHHAKKSEASGFCYTNDIVLSILELLKHHER
VLYIDIDIH---

---ADSLTGDRLGCFNLTLRGHAPMYRIFKVIQCTIGCIGWWWLYY*kcctlldl*nfdf
ggfrikg*ialq*lfrilwsri*ityhskqygeskhkrllgeiknstlgks*kfkscssc
rss*ytt*ff*lf**rr**rs*c*nl*s*s**kgtssr*ii*f**rrw*kkl**wfrsyf
nlkkkssfnfcl**rktil***k*****q*****************xsss**rc
Translated Amino Acid sequence (All Frames) 
Frame A:
iyfvnihityiyiyi*i*vpvkfhistitkwetitmvltiq*nliv*e*hti*f*imeyi
krckyldqekhrn*s*qtftlmiisis*nlshriicmiiqnn*lnlm*gkialylmacii
fvkyhqvvqldvqlklivknqm*qliglvvyimqrnlkhqvfviqmilfyqf*ny*nimk
eyyililifi---

---vqih*qvid*vvsi*h*evtlqcieflksfnvplvvlggggytiknvarcwtyetsi
lvdselkdelpyndyleyygpeyrlhitpnnmenqntkdyleklkiqllenlrnlnhapa
aahhdippdsfnysddeddedpdvriseadrdkkvhhqgelsdsdeedgrrnysngleat
stsrrnqvsisaydkerpsynsrnnnnnnnnnnnnnnnnnnnsnnnxshhhneda

Frame B:
fil*iyilhiyiyiyryeyp*sfiflr*rsgkpllws*psnetssyendtrfsfklwni*
kdani*tkksigirvnklsl**lyqflktchtg*ya*lfktis*i*ckgrlpci*whv*f
lsniirwfnwmcs*s***rircsn*lgwwftsckei*sirfllyk*ycfinfriikts*k
siiy*y*yss---

---crfidr**irlfqfniersrsnvsnf*shsmyhwlywvvvvillkmlhvvglmklrf
wwiqn*rmncptmii*nimvqnidyislqtiwriktqkitwrn*kfnswkilei*imlql
plimiyhlilliilmtkmmkilmleslklivikryiikvnylilmkkmveeiivmv*kll
qpqeeikfqfllmikkdhliiveiiiiitiiiiiiiiiiiiiviiixviiimkmx

Frame C:
LFCKYTYYIYIYIYIDMSTRKVSYFYDNEVGNHYYGPNHPMKPHRMRMTHDLVLNYGIYK
KMQIFRPRKASELELTNFHSDDYINFLKLVTPDNMHDYSKQLVKFNVREDCPVFDGMYNF
CQISSGGSIGCAVKVNSKESDVAINWAGGLHHAKKSEASGFCYTNDIVLSILELLKHHER
VLYIDIDIH---

---ADSLTGDRLGCFNLTLRGHAPMYRIFKVIQCTIGCIGWWWLYY*kcctlldl*nfdf
ggfrikg*ialq*lfrilwsri*ityhskqygeskhkrllgeiknstlgks*kfkscssc
rss*ytt*ff*lf**rr**rs*c*nl*s*s**kgtssr*ii*f**rrw*kkl**wfrsyf
nlkkkssfnfcl**rktil***k*****q*****************xsss**rc
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM130 (AFM130Q) /CSM/AF/AFM1-B/AFM130Q.Seq.d/                       2189   0.0
AFK448 (AFK448Q) /CSM/AF/AFK4-B/AFK448Q.Seq.d/                       1189   0.0
AFM203 (AFM203Q) /CSM/AF/AFM2-A/AFM203Q.Seq.d/                       1033   0.0
FC-BE07 (FC-BE07Q) /CSM/FC/FC-BE/FC-BE07Q.Seq.d/                      702   0.0
VHN657 (VHN657Q) /CSM/VH/VHN6-C/VHN657Q.Seq.d/                         42   0.021
VHN260 (VHN260Q) /CSM/VH/VHN2-C/VHN260Q.Seq.d/                         42   0.021
VHM442 (VHM442Q) /CSM/VH/VHM4-B/VHM442Q.Seq.d/                         42   0.021
VHG428 (VHG428Q) /CSM/VH/VHG4-B/VHG428Q.Seq.d/                         42   0.021
VHG244 (VHG244Q) /CSM/VH/VHG2-B/VHG244Q.Seq.d/                         42   0.021
VHD493 (VHD493Q) /CSM/VH/VHD4-D/VHD493Q.Seq.d/                         42   0.021
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ346876) Dictyostelium discoideum cDNA clone:dda25k07, 3' ...  1187   0.0    1
(BJ345063) Dictyostelium discoideum cDNA clone:dda21p12, 3' ...  1187   0.0    1
(BJ329540) Dictyostelium discoideum cDNA clone:dda25k07, 5' ...  1039   0.0    1
(BJ329462) Dictyostelium discoideum cDNA clone:dda25e02, 5' ...  1033   0.0    1
(BJ327712) Dictyostelium discoideum cDNA clone:dda21p12, 5' ...   813   0.0    1
(AU284593) Dictyostelium discoideum gamete cDNA clone:FC-BE0...   593   0.0    3
(EC822659) SME00003551 esmbsro2 Sawyeria marylandensis cDNA,...   161   2e-44  5
(ER328729) 1092344238085 Global-Ocean-Sampling_GS-34-01-01-1...    82   4e-34  5
(AR549929) Sequence 5060 from patent US 6747137.                   48   2e-31  7
(DY891647) CeleSEQ10393 Cunninghamella elegans pBluescript (...   113   8e-28  2
dna update 2009. 4. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q4QQW4) RecName: Full=Histone deacetylase 1;          Short=HD1...   278   3e-73
AB451297_1(AB451297|pid:none) Homo sapiens HDAC1 mRNA for histon...   278   3e-73
(Q13547) RecName: Full=Histone deacetylase 1;          Short=HD1...   278   3e-73
AY893466_1(AY893466|pid:none) Synthetic construct Homo sapiens c...   278   3e-73
AF043328_1(AF043328|pid:none) Gallus gallus histone deacetylase ...   278   3e-73
EF103432_1(EF103432|pid:none) Haliotis discus discus histone dea...   278   4e-73
AF506201_1(AF506201|pid:none) Danio rerio histone deaceytlase 1 ...   276   8e-73
BC085375_1(BC085375|pid:none) Danio rerio histone deacetylase 1,...   276   8e-73
BC064650_1(BC064650|pid:none) Danio rerio histone deacetylase 1,...   276   8e-73
BT045209_1(BT045209|pid:none) Salmo salar clone ssal-rgf-514-359...   276   1e-72
protein update 2009. 4. 4
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM130 is

5' end seq. ID AFM130F
5' end seq. 
>AFM130F.Seq
ATTTATTTTGTAAATATACATATTACATATATATATATATATATATAGATATGAGTACCC
GTAAAGTTTCATATTTCTACGATAACGAAGTGGGAAACCATTACTATGGTCCTAACCATC
CAATGAAACCTCATCGTATGAGAATGACACACGATTTAGTTTTAAATTATGGAATATATA
AAAAGATGCAAATATTTAGACCAAGAAAAGCATCGGAATTAGAGTTAACAAACTTTCACT
CTGATGATTATATCAATTTCTTAAAACTTGTCACACCGGATAATATGCATGATTATTCAA
AACAATTAGTTAAATTTAATGTAAGGGAAGATTGCCCTGTATTTGATGGCATGTATAATT
TTTGTCAAATATCATCAGGTGGTTCAATTGGATGTGCAGTTAAAGTTAATAGTAAAGAAT
CAGATGTAGCAATTAATTGGGCTGGTGGTTTACATCATGCAAAGAAATCTGAAGCATCAG
GTTTTTGTTATACAAATGATATTGTTTTATCAATTTTAGAATTATTAAAACATCATGAAA
GAGTATTATATATTGATATTGATATTCATCAXXXXXXXXXX
Length of 5' end seq. 581
3' end seq. ID AFM130Z
3' end seq. 
>AFM130Z.Seq
XXXXXXXXXXGTGCAGATTCATTGACAGGTGATAGATTAGGTTGTTTCAATTTAACATTG
AGAGGTCACGCTCCAATGTATCGAATTTTTAAAGTCATTCAATGTACCATTGGTTGTATT
GGGTGGTGGTGGTTATACTATTAAAAATGTTGCACGTTGTTGGACTTATGAAACTTCGAT
TTTGGTGGATTCAGAATTAAAGGATGAATTGCCCTACAATGATTATTTAGAATATTATGG
TCCAGAATATAGATTACATATCACTCCAAACAATATGGAGAATCAAAACACAAAAGATTA
CTTGGAGAAATTAAAAATTCAACTCTTGGAAAATCTTAGAAATTTAAATCATGCTCCAGC
TGCCGCTCATCATGATATACCACCTGATTCTTTTAATTATTCTGATGACGAAGATGATGA
AGATCCTGATGTTAGAATCTCTGAAGCTGATCGTGATAAAAAGGTACATCATCAAGGTGA
ATTATCTGATTCTGATGAAGAAGATGGTAGAAGAAATTATAGTAATGGTTTAGAAGCTAC
TTCAACCTCAAGAAGAAATCAAGTTTCAATTTCTGCTTATGATAAAGAAAGACCATCTTA
TAATAGTAGAAATAATAATAATAATAACAATAATAATAATAATAATAATAATAATAATAA
TAATAATAGTAATAATAATAANAGTCATCATCATAATGAAGATGCNG
Length of 3' end seq. 707
Connected seq. ID AFM130P
Connected seq. 
>AFM130P.Seq
ATTTATTTTGTAAATATACATATTACATATATATATATATATATATAGATATGAGTACCC
GTAAAGTTTCATATTTCTACGATAACGAAGTGGGAAACCATTACTATGGTCCTAACCATC
CAATGAAACCTCATCGTATGAGAATGACACACGATTTAGTTTTAAATTATGGAATATATA
AAAAGATGCAAATATTTAGACCAAGAAAAGCATCGGAATTAGAGTTAACAAACTTTCACT
CTGATGATTATATCAATTTCTTAAAACTTGTCACACCGGATAATATGCATGATTATTCAA
AACAATTAGTTAAATTTAATGTAAGGGAAGATTGCCCTGTATTTGATGGCATGTATAATT
TTTGTCAAATATCATCAGGTGGTTCAATTGGATGTGCAGTTAAAGTTAATAGTAAAGAAT
CAGATGTAGCAATTAATTGGGCTGGTGGTTTACATCATGCAAAGAAATCTGAAGCATCAG
GTTTTTGTTATACAAATGATATTGTTTTATCAATTTTAGAATTATTAAAACATCATGAAA
GAGTATTATATATTGATATTGATATTCATCA----------GTGCAGATTCATTGACAGG
TGATAGATTAGGTTGTTTCAATTTAACATTGAGAGGTCACGCTCCAATGTATCGAATTTT
TAAAGTCATTCAATGTACCATTGGTTGTATTGGGTGGTGGTGGTTATACTATTAAAAATG
TTGCACGTTGTTGGACTTATGAAACTTCGATTTTGGTGGATTCAGAATTAAAGGATGAAT
TGCCCTACAATGATTATTTAGAATATTATGGTCCAGAATATAGATTACATATCACTCCAA
ACAATATGGAGAATCAAAACACAAAAGATTACTTGGAGAAATTAAAAATTCAACTCTTGG
AAAATCTTAGAAATTTAAATCATGCTCCAGCTGCCGCTCATCATGATATACCACCTGATT
CTTTTAATTATTCTGATGACGAAGATGATGAAGATCCTGATGTTAGAATCTCTGAAGCTG
ATCGTGATAAAAAGGTACATCATCAAGGTGAATTATCTGATTCTGATGAAGAAGATGGTA
GAAGAAATTATAGTAATGGTTTAGAAGCTACTTCAACCTCAAGAAGAAATCAAGTTTCAA
TTTCTGCTTATGATAAAGAAAGACCATCTTATAATAGTAGAAATAATAATAATAATAACA
ATAATAATAATAATAATAATAATAATAATAATAATAATAGTAATAATAATAANAGTCATC
ATCATAATGAAGATGCNG
Length of connected seq. 1268
Full length Seq ID -
Full length Seq. -
Length of full length seq. -