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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM127
Library AF
(Link to library)
Clone ID AFM127
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AFM127 (AFM127Q) /CSM/AF/AFM1-B/AFM127Q.Seq.d/
XXXXXXXXXXANATAANAANGGAAANATTNATTTNTCAATTTNAAANAAAAAATTGGAAA
NGCNAATNTGGAAAATTNAAACTTCNATTGTTAGNNACCAAAATAATAATAATAATAATA
ATAATGATCCNATAATGATATTNAATNAACNTTCNAATAAANATTTAAAGGNTAATTCNA
TTGATGNTGGNGGNTCNTTAATTAATTCNAATGANATTGAAAANTATTGNGNCNTTAATA
ATAATAATAATAANAGNGATAATAANAGNGANAATGANANGGAANGGNAACTTAATGAAA
TTAGNCCCAACGNTTTCCCNATTNAAAATCNATTTNCNAANAATTTCA
sequence update 2009. 4. 3
Translated Amino Acid sequence 
---XXXGXIXXSIXXKKLEXXXWKIXTSIVXXQNNNNNNNNDPIMIXNXXSNKXLKXNSI
DXGGSLINSNXIEXYXXXNNNNNXXDNXXXNXXEXXLNEIXPNXFPIXNXFXXNF
Translated Amino Acid sequence (All Frames) 
Frame A:
---XXXGXIXXSIXXKKLEXXXWKIXTSIVXXQNNNNNNNNDPIMIXNXXSNKXLKXNSI
DXGGSLINSNXIEXYXXXNNNNNXXDNXXXNXXEXXLNEIXPNXFPIXNXFXXNF


Frame B:
---ixxexxixqfxxknwkxxxgkxklxllxtkiiiiiiimix**yxxnxxixi*rxixl
mxxxx*lixmxlkxixxliiiiixxiixxxmxxxgnlmklxptxsxxkixxxxis


Frame C:
---*xxkxxfxnxkxkigxanxenxnfxc*xpk********sxndixxtfx*xfkg*fx*
xwxxxn*fx*x*kxlxx******xx**xxx*xgxxt**n*xqrfpxxksixxxf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM127 (AFM127Q) /CSM/AF/AFM1-B/AFM127Q.Seq.d/                        117   1e-25
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ346853) Dictyostelium discoideum cDNA clone:dda25e07, 3' ...   117   6e-61  3
dna update 2009. 4. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54HY4) RecName: Full=Putative uncharacterized protein DDB_G028...    36   0.34
AY191013_1(AY191013|pid:none) Dictyostelium discoideum autophagy...    34   1.7
(Q55CC5) RecName: Full=Beclin-1-like protein A; AltName: Full=Au...    34   1.7
AC115612_28(AC115612|pid:none) Dictyostelium discoideum chromoso...    33   3.8
AL844507_19(AL844507|pid:none) Plasmodium falciparum 3D7 chromos...    32   6.5
protein update 2009. 4. 4
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM127 is

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFM127Z
3' end seq. 
>AFM127Z.Seq
XXXXXXXXXXANATAANAANGGAAANATTNATTTNTCAATTTNAAANAAAAAATTGGAAA
NGCNAATNTGGAAAATTNAAACTTCNATTGTTAGNNACCAAAATAATAATAATAATAATA
ATAATGATCCNATAATGATATTNAATNAACNTTCNAATAAANATTTAAAGGNTAATTCNA
TTGATGNTGGNGGNTCNTTAATTAATTCNAATGANATTGAAAANTATTGNGNCNTTAATA
ATAATAATAATAANAGNGATAATAANAGNGANAATGANANGGAANGGNAACTTAATGAAA
TTAGNCCCAACGNTTTCCCNATTNAAAATCNATTTNCNAANAATTTCA
Length of 3' end seq. 348
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -