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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFA603
Library VF
(Link to library)
Clone ID VFA603
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16269-1
Original site URL
Representative seq. ID VFA603E
(Link to Original site)
Representative DNA sequence 
>VFA603 (VFA603Q) /CSM/VF/VFA6-A/VFA603Q.Seq.d/
AGAAATATCACACATAAAAAATGACTACTCGTCCATTTGTCCAAGTCTTTGATGCCCAAA
ACAAAGTTGTAGGTAAAGTTAAGCTCCCAAATGTCTTGACCACCCCAATCCGTCCAGATT
TAGTTAACTTTGTCCACACCAACTTAAACAAGAATGCTCGTCAAGCTTATGGTGCTGCTC
CATACGCTGGTGAACAAACCTCTGCTGAATCATGGGGTACTGGTCGTGCTGTCGCTCGTA
TTCCTCGTGTTCCAGGTTCAGGTACACACCGTTCAGGTCAAGGTGCCTTCGGTAACATGT
GTAGAGGTGGTCGTATGTATGGTCCAAACAAGACCTGGAGACGTTGGAATCGTAAAGTTA
ACGTCAACCAAAAGAGATACGCTGTTGTCTCAGCTTTAGCTGCCTCAGCTGTCCCAGCCC
TCGTTATGGCTCGTGGTCACAGAATCAATGGTATCAATGAAGTCCCATTAGTCATTGCCA
ACGAATCCCGTTGACACCCTCCAAAAAAACCAAAAGCTGCCGTTGAATTATTAAAGAAAA
TCAACGCCTACGCTGATGTCACCAAAGTCATCGACTCCAAACATATTCGTGCTGGTGCTG
GTAAAGCAAGAAACAGACGTTACAAAGTCCGTAAAGGTCCATTAGTCGTCGTCTCTGGTA
AGACTACCGTCTCCCAAGCCTTACGTAACATCCCAGGTGTTGAAGTTGCCAACGTCTCAA
GACTCAACTTATTAAAATTAGCACCAGGTGGTCACTTAGGTAGATTCATCATCTGGACTA
AATCCGCTTTCGAACAATTAGACTCAACCTTTGGTACCTTTGCCAAATCATCTGCTCAAA
AGAAAGGTTACACTCTCCCACGTCCAATGATTGCTAACGCTGATATTGTCAGACTCGTCA
ACTCTGATGAAATCCAAGCTGCCGTTAGAGCCAGCAAAGTCGTCGTCAAACGTCCAACTG
CCCCAGTTCGTCGTTCTAACCCATTAAAGAACTTACGTGCTANATTAAATTAAACCCAGC
CGCCGTCTCAACCCGTCGTACTCAAGTTAAATCATTAAAATCAAAAGGTATCAAAGTTAG
CAAAAAGAATCAATTAAGAGCTAAATAGTTGCNGCCACTTTCAACCAATAATTTTAAATA
GAT
sequence update 2001. 6. 9
Translated Amino Acid sequence 
kyht*kmttrpfvqvfdaqnkvvgkvklpnvlttpirpdlvnfvhtnlnknarqaygaap
yageqtsaeswgtgravariprvpgsgthrsgqgafgnmcrggrmygpnktwrrwnrkvn
vnqkryavvsalaasavpalvmarghringinevplvianesr*HPPKKPKAAVELLKKI
NAYADVTKVIDSKHIRAGAGKARNRRYKVRKGPLVVVSGKTTVSQALRNIPGVEVANVSR
LNLLKLAPGGHLGRFIIWTKSAFEQLDSTFGTFAKSSAQKKGYTLPRPMIANADIVRLVN
SDEIQAAVRASKVVVKRPTAPVRRSNPLKNLRAXLN*tqppsqpvvlklnh*nqkvskla
krin*elnscxhfqpiilnr
Translated Amino Acid sequence (All Frames) 
Frame A:
rnithkk*llvhlskslmpktkl*vklssqms*ppqsvqi*ltlstpt*trmlvklmvll
htlvnkpllnhgvlvvlslvflvfqvqvhtvqvkvpsvtcvevvvcmvqtrpgdvgivkl
tstkrdtllsql*lpqlsqpslwlvvtesmvsmksh*slptnpvdtlqknqklplny*rk
stptlmspksstpnifvlvlvkqetdvtksvkvh*ssslvrlpspkpyvtsqvlklptsq
dsty*n*hqvvt*vdsssglnplsnn*tqplvplpnhllkrkvtlshvq*lltlilsdss
tlmksklplepaksssnvqlpqfvvlth*rtyvlx*ikpsrrlnpsyss*iikikryqs*
qkesiks*ivaatfnq*f*id


Frame B:
eishikndyssicpsl*cpkqscr*s*apkcldhpnpsrfs*lcphqlkqecssslwccs
irw*tnlc*imgywsccrsysscsrfrytpfrsrclr*hv*rwsyvwskqdletles*s*
rqpkeircclsfsclscpsprygswsqnqwyq*spishcqripltpskktkscr*iiken
qrlr*chqshrlqtyscwcw*skkqtlqsp*rsisrrlw*dyrlpslt*hprc*scqrlk
tqlikistrwslr*ihhld*irfrtirlnlwylcqiicskerlhsptsndc*r*ycqtrq
l**npscr*sqqsrrqtsncpsssf*pikeltcxiklnpaavstrrtqvkslkskgikvs
kknqlrak*lxplstnnfk*


Frame C:
kyht*kmttrpfvqvfdaqnkvvgkvklpnvlttpirpdlvnfvhtnlnknarqaygaap
yageqtsaeswgtgravariprvpgsgthrsgqgafgnmcrggrmygpnktwrrwnrkvn
vnqkryavvsalaasavpalvmarghringinevplvianesr*HPPKKPKAAVELLKKI
NAYADVTKVIDSKHIRAGAGKARNRRYKVRKGPLVVVSGKTTVSQALRNIPGVEVANVSR
LNLLKLAPGGHLGRFIIWTKSAFEQLDSTFGTFAKSSAQKKGYTLPRPMIANADIVRLVN
SDEIQAAVRASKVVVKRPTAPVRRSNPLKNLRAXLN*tqppsqpvvlklnh*nqkvskla
krin*elnscxhfqpiilnr
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFA603 (VFA603Q) /CSM/VF/VFA6-A/VFA603Q.Seq.d/                       2212   0.0
VFA446 (VFA446Q) /CSM/VF/VFA4-B/VFA446Q.Seq.d/                       2157   0.0
VFA716 (VFA716Q) /CSM/VF/VFA7-A/VFA716Q.Seq.d/                       2153   0.0
VFI733 (VFI733Q) /CSM/VF/VFI7-B/VFI733Q.Seq.d/                       2139   0.0
VFA671 (VFA671Q) /CSM/VF/VFA6-C/VFA671Q.Seq.d/                       2131   0.0
VFO834 (VFO834Q) /CSM/VF/VFO8-B/VFO834Q.Seq.d/                       2125   0.0
VFO772 (VFO772Q) /CSM/VF/VFO7-C/VFO772Q.Seq.d/                       2125   0.0
VFJ890 (VFJ890Q) /CSM/VF/VFJ8-D/VFJ890Q.Seq.d/                       2125   0.0
VFO824 (VFO824Q) /CSM/VF/VFO8-A/VFO824Q.Seq.d/                       2123   0.0
VFO432 (VFO432Q) /CSM/VF/VFO4-B/VFO432Q.Seq.d/                       2123   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence.   963  0.0  7
AL424490|AL424490.1 T7 end of clone AZ0AA014F12 of library AZ0AA from strain CBS 712 of Kluyveromyces marxianus.    88  7e-31  5
Z35900|Z35900.1 S.cerevisiae chromosome II reading frame ORF YBR031w.    84  4e-27  3
Z74308|Z74308.1 S.cerevisiae chromosome IV reading frame ORF YDR012w.    84  1e-26  3
AQ874948|AQ874948.1 V119B5 mTn-3xHA/lacZ Insertion Library, strain Y2278 Saccharomyces cerevisiae genomic 5', genomic survey sequence.    84  1e-25  2
J03195|J03195.1 Yeast (S.cerevisiae) ribosomal protein L2 (ScrpL2A) gene, complete cds.    84  4e-25  2
X76078|X76078.1 S.cerevisiae (alphaS288C) GAL1, FUR4 and CAL1 genes.    84  1e-24  3
X95966|X95966.1 S.cerevisiae 35.4kb DNA region on left arm of chromosome IV.    84  2e-24  3
Z48008|Z48008.1 S.cerevisiae chromosome IV cosmid 8119.           84  2e-24  3
T38830|T38830.1 EST104394 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 3' end, mRNA sequence.    78  3e-24  2
dna update 2003. 8.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF147296_1(EF147296|pid:none) Populus trichocarpa clone WS0122_F...   353   1e-97
CP000595_105(CP000595|pid:none) Ostreococcus lucimarinus CCE9901...   347   6e-94
AB236838_1(AB236838|pid:none) Trifolium pratense RNA for putativ...   342   9e-94
EF676106_1(EF676106|pid:none) Picea sitchensis clone WS02710_D09...   342   1e-93
AC123596_24(AC123596|pid:none) Medicago truncatula clone mth1-17...   338   3e-93
AC148756_18(AC148756|pid:none) Medicago truncatula clone mth2-22...   337   2e-92
CP001333_223(CP001333|pid:none) Micromonas sp. RCC299 chromosome...   339   1e-91
AY190725_1(AY190725|pid:none) Pagrus major ribosomal protein L4 ...   334   2e-91
(Q9SF40) RecName: Full=60S ribosomal protein L4-1;          Shor...   337   4e-91
(P49691) RecName: Full=60S ribosomal protein L4-2; AltName: Full...   335   1e-90
protein update 2009. 7.10
PSORT 

 psg: 0.62  gvh: 0.39  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.13  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi

>> prediction for VFA603 is nuc
5' end seq. ID VFA603F
5' end seq. 
>VFA603F.Seq
AGAAATATCACACATAAAAAATGACTACTCGTCCATTTGTCCAAGTCTTTGATGCCCAAA
ACAAAGTTGTAGGTAAAGTTAAGCTCCCAAATGTCTTGACCACCCCAATCCGTCCAGATT
TAGTTAACTTTGTCCACACCAACTTAAACAAGAATGCTCGTCAAGCTTATGGTGCTGCTC
CATACGCTGGTGAACAAACCTCTGCTGAATCATGGGGTACTGGTCGTGCTGTCGCTCGTA
TTCCTCGTGTTCCAGGTTCAGGTACACACCGTTCAGGTCAAGGTGCCTTCGGTAACATGT
GTAGAGGTGGTCGTATGTATGGTCCAAACAAGACCTGGAGACGTTGGAATCGTAAAGTTA
ACGTCAACCAAAAGAGATACGCTGTTGTCTCAGCTTTAGCTGCCTCAGCTGTCCCAGCCC
TCGTTATGGCTCGTGGTCACAGAATCAATGGTATCAATGAAGTCCCATTAGTCATTGCCA
ACGAATCCGTTGACACCCTCCAAAAAAACCAAAGCTGCCGTTGAATTATTAAAGAAAATC
AACGCCTACGCTGATGTCACCAAAGTCATCGACT----------
Length of 5' end seq. 574
3' end seq. ID VFA603Z
3' end seq. 
>VFA603Z.Seq
----------AGAATCAATGGTATCAATGAAGTCCCATTAGTCATTGCCAACGAATCCCG
TTGACACCCTCCAAAAAAACCAAAAGCTGCCGTTGAATTATTAAAGAAAATCAACGCCTA
CGCTGATGTCACCAAAGTCATCGACTCCAAACATATTCGTGCTGGTGCTGGTAAAGCAAG
AAACAGACGTTACAAAGTCCGTAAAGGTCCATTAGTCGTCGTCTCTGGTAAGACTACCGT
CTCCCAAGCCTTACGTAACATCCCAGGTGTTGAAGTTGCCAACGTCTCAAGACTCAACTT
ATTAAAATTAGCACCAGGTGGTCACTTAGGTAGATTCATCATCTGGACTAAATCCGCTTT
CGAACAATTAGACTCAACCTTTGGTACCTTTGCCAAATCATCTGCTCAAAAGAAAGGTTA
CACTCTCCCACGTCCAATGATTGCTAACGCTGATATTGTCAGACTCGTCAACTCTGATGA
AATCCAAGCTGCCGTTAGAGCCAGCAAAGTCGTCGTCAAACGTCCAACTGCCCCAGTTCG
TCGTTCTAACCCATTAAAGAACTTACGTGCTANATTAAATTAAACCCAGCCGCCGTCTCA
ACCCGTCGTACTCAAGTTAAATCATTAAAATCAAAAGGTATCAAAGTTAGCAAAAAGAAT
CAATTAAGAGCTAAATAGTTGCNGCCACTTTCAACCAATAATTTTAAATAGAT
Length of 3' end seq. 703
Connected seq. ID VFA603P
Connected seq. 
>VFA603P.Seq
AGAAATATCACACATAAAAAATGACTACTCGTCCATTTGTCCAAGTCTTTGATGCCCAAA
ACAAAGTTGTAGGTAAAGTTAAGCTCCCAAATGTCTTGACCACCCCAATCCGTCCAGATT
TAGTTAACTTTGTCCACACCAACTTAAACAAGAATGCTCGTCAAGCTTATGGTGCTGCTC
CATACGCTGGTGAACAAACCTCTGCTGAATCATGGGGTACTGGTCGTGCTGTCGCTCGTA
TTCCTCGTGTTCCAGGTTCAGGTACACACCGTTCAGGTCAAGGTGCCTTCGGTAACATGT
GTAGAGGTGGTCGTATGTATGGTCCAAACAAGACCTGGAGACGTTGGAATCGTAAAGTTA
ACGTCAACCAAAAGAGATACGCTGTTGTCTCAGCTTTAGCTGCCTCAGCTGTCCCAGCCC
TCGTTATGGCTCGTGGTCACAGAATCAATGGTATCAATGAAGTCCCATTAGTCATTGCCA
ACGAATCCGTTGACACCCTCCAAAAAAACCAAAGCTGCCGTTGAATTATTAAAGAAAATC
AACGCCTACGCTGATGTCACCAAAGTCATCGACT----------AGAATCAATGGTATCA
ATGAAGTCCCATTAGTCATTGCCAACGAATCCCGTTGACACCCTCCAAAAAAACCAAAAG
CTGCCGTTGAATTATTAAAGAAAATCAACGCCTACGCTGATGTCACCAAAGTCATCGACT
CCAAACATATTCGTGCTGGTGCTGGTAAAGCAAGAAACAGACGTTACAAAGTCCGTAAAG
GTCCATTAGTCGTCGTCTCTGGTAAGACTACCGTCTCCCAAGCCTTACGTAACATCCCAG
GTGTTGAAGTTGCCAACGTCTCAAGACTCAACTTATTAAAATTAGCACCAGGTGGTCACT
TAGGTAGATTCATCATCTGGACTAAATCCGCTTTCGAACAATTAGACTCAACCTTTGGTA
CCTTTGCCAAATCATCTGCTCAAAAGAAAGGTTACACTCTCCCACGTCCAATGATTGCTA
ACGCTGATATTGTCAGACTCGTCAACTCTGATGAAATCCAAGCTGCCGTTAGAGCCAGCA
AAGTCGTCGTCAAACGTCCAACTGCCCCAGTTCGTCGTTCTAACCCATTAAAGAACTTAC
GTGCTANATTAAATTAAACCCAGCCGCCGTCTCAACCCGTCGTACTCAAGTTAAATCATT
AAAATCAAAAGGTATCAAAGTTAGCAAAAAGAATCAATTAAGAGCTAAATAGTTGCNGCC
ACTTTCAACCAATAATTTTAAATAGAT
Length of connected seq. 1277
Full length Seq ID VFA603E
Full length Seq. 
>VFA603E.Seq
AGAAATATCACACATAAAAAATGACTACTCGTCCATTTGTCCAAGTCTTTGATGCCCAAA
ACAAAGTTGTAGGTAAAGTTAAGCTCCCAAATGTCTTGACCACCCCAATCCGTCCAGATT
TAGTTAACTTTGTCCACACCAACTTAAACAAGAATGCTCGTCAAGCTTATGGTGCTGCTC
CATACGCTGGTGAACAAACCTCTGCTGAATCATGGGGTACTGGTCGTGCTGTCGCTCGTA
TTCCTCGTGTTCCAGGTTCAGGTACACACCGTTCAGGTCAAGGTGCCTTCGGTAACATGT
GTAGAGGTGGTCGTATGTATGGTCCAAACAAGACCTGGAGACGTTGGAATCGTAAAGTTA
ACGTCAACCAAAAGAGATACGCTGTTGTCTCAGCTTTAGCTGCCTCAGCTGTCCCAGCCC
TCGTTATGGCTCGTGGTCACAGAATCAATGGTATCAATGAAGTCCCATTAGTCATTGCCA
ACGAATCCCGTTGACACCCTCCAAAAAAACCAAAAGCTGCCGTTGAATTATTAAAGAAAA
TCAACGCCTACGCTGATGTCACCAAAGTCATCGACTCCAAACATATTCGTGCTGGTGCTG
GTAAAGCAAGAAACAGACGTTACAAAGTCCGTAAAGGTCCATTAGTCGTCGTCTCTGGTA
AGACTACCGTCTCCCAAGCCTTACGTAACATCCCAGGTGTTGAAGTTGCCAACGTCTCAA
GACTCAACTTATTAAAATTAGCACCAGGTGGTCACTTAGGTAGATTCATCATCTGGACTA
AATCCGCTTTCGAACAATTAGACTCAACCTTTGGTACCTTTGCCAAATCATCTGCTCAAA
AGAAAGGTTACACTCTCCCACGTCCAATGATTGCTAACGCTGATATTGTCAGACTCGTCA
ACTCTGATGAAATCCAAGCTGCCGTTAGAGCCAGCAAAGTCGTCGTCAAACGTCCAACTG
CCCCAGTTCGTCGTTCTAACCCATTAAAGAACTTACGTGCTANATTAAATTAAACCCAGC
CGCCGTCTCAACCCGTCGTACTCAAGTTAAATCATTAAAATCAAAAGGTATCAAAGTTAG
CAAAAAGAATCAATTAAGAGCTAAATAGTTGCNGCCACTTTCAACCAATAATTTTAAATA
GAT
Length of full length seq. 1143