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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM118
Library AF
(Link to library)
Clone ID AFM118
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM118P
(Link to Original site)
Representative DNA sequence 
>AFM118 (AFM118Q) /CSM/AF/AFM1-A/AFM118Q.Seq.d/
AACCAAATCAAGAAAAACTAATAATATATTTAAGATGTCTGAAAATTCATCACCAAAATT
AGAATCAACATCAGCAGCAGCAGCAAGTACAAAAAAACCATTCCCAGAATGGATTAAACC
TAAAGGCAAAGAAACTGAATTATTAATTAATAATAGTTTAACAGGTGGTAAAGTACCATT
CGTTTTCAATGAAAGTGGTAAAGGTAGATCATTAACATGGTATGCTTGTGGTCCAACAGT
TTATGATGCATCACATATGGGTCATGCTAGAACTTATATTAGTTTTGATATCATTAGACG
TATTATGAAAAATTATCTTGGTTTCAATATCCAATATGTTATGAACATTACCGATATTGA
TGATAAAATCATTATTCGTGCAAATGAAAATGGTATTTCACATAGTGATCTTTCAAAAAA
ATGGGAGACTGCTTTCTTTGAAGATATGAAATTATTAAATGTATTACCACCAGATGCATT
AACCAAGAGTTACAGAATATGTACCACAAATTGTTGAATATGTTGAAAAGATTATTTCAA
ATGGATTTGCATATGAATCAAATXXXXXXXXXXTGGAAAAGTATACTTCACGTCAAAATG
AGAATGTTTTTCATTCTTCATAAATATGATAAAGCCATGAACTATTCACCAGAGGTCCAT
GGGTTACGCCATTGAAATGGAGAAAACTTTTGTAGAGTTCTTCCATACCGCCAAACAAAT
CCTTAGAGATTCTCCATTATCTTTACCACAATTTTGGACTCAAGCTGAAAAGGATTTAAA
TAAACATCTTCAAAATGCAAATGACCAAGTTCATCAATTCATTCTTGATAACTTTAACAC
CTCTGACGCTTTGAAAACTTTATCAGATCTCGTCAATAAAACAAATGTTTACATTAGATC
ATGTGCTGAACAAAAGACAAATCCAAGATTAAATTTAATTAGTGCAATCGCAGAGTATAT
CACTTACATTTTCTCTGTTTTCGGTTTAACCGAATCTTCAACCGCCTCTTCAATGATTGG
TTTCGGTTCCGCTGGTAAAGGTAATATCGAAGAGGAGATGACTCCAATCTTAAATGCTCT
CACTCAATTCCGTTCAGAGGTACGTGCTTCTGCAATCGCAAAAGATACTACCTCAATCCT
TAAAACTTGTGATAACCTTCGTGATGAGGTTTTACCATTATTGGGCGTAAAGATTGATGA
TAAATCCGCAACAACTGCAATGTGGAAATTGAAGATAAAGAAACCCTCAAAAAAGAAATG
AACAAAAGAAAGAAATNAAAAGAAGAAACAAGC
sequence update 2009. 4. 3
Translated Amino Acid sequence 
nqikkn**yi*dv*kfitkirinisssskykktiprmd*t*rqrn*iin***fnrw*sti
rfq*kw*r*iinmvclwsnsl*citygsc*nly*f*yh*tyyeklswfqypicyehyry*
**nhysck*kwyft**sfkkmgdcfl*RYEIIKCITTRCINQELQNMYHKLLNMLKRLFQ
MDLHMNQ---

---WKSILHVKMRMFFILHKYDKAMNYSPEVHGLRH*ngenfcrvlpyrqtnp*rfsiif
ttildss*kgfk*tsskck*psssihs**l*hl*rfenfirsrq*nkclh*imc*tkdks
kikfn*cnrrvyhlhflcfrfnrifnrlfndwfrfrw*r*yrrgddsnlkcshsipfrgt
cfcnrkryylnp*nl**ps**gftiigrkd***irnncnveiedketlkkemnkrkkxke
ets
Translated Amino Acid sequence (All Frames) 
Frame A:
nqikkn**yi*dv*kfitkirinisssskykktiprmd*t*rqrn*iin***fnrw*sti
rfq*kw*r*iinmvclwsnsl*citygsc*nly*f*yh*tyyeklswfqypicyehyry*
**nhysck*kwyft**sfkkmgdcfl*RYEIIKCITTRCINQELQNMYHKLLNMLKRLFQ
MDLHMNQ---

---WKSILHVKMRMFFILHKYDKAMNYSPEVHGLRH*ngenfcrvlpyrqtnp*rfsiif
ttildss*kgfk*tsskck*psssihs**l*hl*rfenfirsrq*nkclh*imc*tkdks
kikfn*cnrrvyhlhflcfrfnrifnrlfndwfrfrw*r*yrrgddsnlkcshsipfrgt
cfcnrkryylnp*nl**ps**gftiigrkd***irnncnveiedketlkkemnkrkkxke
ets

Frame B:
tksrktnnifkmsensspklestsaaaastkkpfpewikpkgketellinnsltggkvpf
vfnesgkgrsltwyacgptvydashmghartyisfdiirrimknylgfniqyvmnitdid
dkiiiranengishsdlskkwetaffedmkllnvlppdaltksyricttnc*ic*kdyfk
wici*ik---

---gkvyftsk*ecfsffinmikp*tihqrsmgyaiemektfveffhtakqilrdsplsl
pqfwtqaekdlnkhlqnandqvhqfildnfntsdalktlsdlvnktnvyirscaeqktnp
rlnlisaiaeyityifsvfgltesstassmigfgsagkgnieeemtpilnaltqfrsevr
asaiakdttsilktcdnlrdevlpllgvkiddksattamwklkikkpskkk*tkernxkk
kq

Frame C:
pnqekliiylrclkihhqn*nqhqqqqqvqknhsqnglnlkakklny*liiv*qvvkyhs
fsmkvvkvdh*hgmlvvqqfmmhhiwvmlelilvlisldvl*kiilvsisnml*tlpilm
ikslfvqmkmvfhivifqkngrllslki*ny*myyhqmh*prvteyvpqiveyvekiisn
gfayesn---

---ekytsrqnenvfhss*i**shelftrgpwvtplkwrkll*sssippnksleilhyly
hnfglklkri*inifkmqmtkfinsflitltpltl*klyqissikqmftldhvlnkrqiq
d*i*lvqsqsisltfslfsv*pnlqpplq*lvsvplvkviskrr*lqs*mlslnsvqryv
llqsqkilpqslklvitfvmrfyhywa*rlminpqqlqcgn*r*rnpqkrneqkkexkrr
nk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM118 (AFM118Q) /CSM/AF/AFM1-A/AFM118Q.Seq.d/                       2280   0.0
SFI454 (SFI454Q) /CSM/SF/SFI4-C/SFI454Q.Seq.d/                       1255   0.0
SFD396 (SFD396Q) /CSM/SF/SFD3-D/SFD396Q.Seq.d/                       1255   0.0
AFO752 (AFO752Q) /CSM/AF/AFO7-C/AFO752Q.Seq.d/                       1255   0.0
AFJ344 (AFJ344Q) /CSM/AF/AFJ3-B/AFJ344Q.Seq.d/                       1255   0.0
AFJ714 (AFJ714Q) /CSM/AF/AFJ7-A/AFJ714Q.Seq.d/                       1249   0.0
AFO629 (AFO629Q) /CSM/AF/AFO6-B/AFO629Q.Seq.d/                       1241   0.0
VFL754 (VFL754Q) /CSM/VF/VFL7-C/VFL754Q.Seq.d/                       1221   0.0
CHD303 (CHD303Q) /CSM/CH/CHD3-A/CHD303Q.Seq.d/                       1209   0.0
AFJ330 (AFJ330Q) /CSM/AF/AFJ3-B/AFJ330Q.Seq.d/                       1209   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ346780) Dictyostelium discoideum cDNA clone:dda25c05, 3' ...  1291   0.0    1
(BJ344448) Dictyostelium discoideum cDNA clone:dda19h11, 3' ...  1193   0.0    3
(BJ434680) Dictyostelium discoideum cDNA clone:ddv24l13, 3' ...  1130   0.0    2
(BJ402670) Dictyostelium discoideum cDNA clone:dds17l14, 3' ...  1130   0.0    3
(BJ346249) Dictyostelium discoideum cDNA clone:dda30i08, 3' ...  1130   0.0    3
(BJ399901) Dictyostelium discoideum cDNA clone:dds7p23, 3' e...  1126   0.0    3
(BJ346327) Dictyostelium discoideum cDNA clone:dda30h13, 3' ...  1126   0.0    3
(BJ344684) Dictyostelium discoideum cDNA clone:dda20l03, 3' ...  1126   0.0    3
(BJ376323) Dictyostelium discoideum cDNA clone:ddc28f01, 3' ...  1124   0.0    2
(BJ344462) Dictyostelium discoideum cDNA clone:dda19l07, 3' ...  1070   0.0    3
dna update 2009. 4. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014185_147(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...   150   5e-39
BX538350_42(BX538350|pid:none) Cryptosporidium parvum chromosome...   139   2e-36
AL590448_49(AL590448|pid:none) chromosome VIII of strain GB-M1 o...   127   7e-32
BC166536_1(BC166536|pid:none) Rattus norvegicus similar to hypot...   128   2e-31
BC007220_1(BC007220|pid:none) Homo sapiens cysteinyl-tRNA synthe...   125   1e-30
(Q9HA77) RecName: Full=Probable cysteinyl-tRNA synthetase, mitoc...   125   1e-30
(Q8BYM8) RecName: Full=Probable cysteinyl-tRNA synthetase, mitoc...   125   1e-30
AK009937_1(AK009937|pid:none) Mus musculus adult male tongue cDN...   125   1e-30
AK041962_1(AK041962|pid:none) Mus musculus 3 days neonate thymus...   125   1e-30
AK021302_1(AK021302|pid:none) Mus musculus 13 days embryo stomac...   125   1e-30
protein update 2009. 4. 4
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM118 is

5' end seq. ID AFM118F
5' end seq. 
>AFM118F.Seq
AACCAAATCAAGAAAAACTAATAATATATTTAAGATGTCTGAAAATTCATCACCAAAATT
AGAATCAACATCAGCAGCAGCAGCAAGTACAAAAAAACCATTCCCAGAATGGATTAAACC
TAAAGGCAAAGAAACTGAATTATTAATTAATAATAGTTTAACAGGTGGTAAAGTACCATT
CGTTTTCAATGAAAGTGGTAAAGGTAGATCATTAACATGGTATGCTTGTGGTCCAACAGT
TTATGATGCATCACATATGGGTCATGCTAGAACTTATATTAGTTTTGATATCATTAGACG
TATTATGAAAAATTATCTTGGTTTCAATATCCAATATGTTATGAACATTACCGATATTGA
TGATAAAATCATTATTCGTGCAAATGAAAATGGTATTTCACATAGTGATCTTTCAAAAAA
ATGGGAGACTGCTTTCTTTGAAGATATGAAATTATTAAATGTATTACCACCAGATGCATT
AACCAAGAGTTACAGAATATGTACCACAAATTGTTGAATATGTTGAAAAGATTATTTCAA
ATGGATTTGCATATGAATCAAATXXXXXXXXXX
Length of 5' end seq. 573
3' end seq. ID AFM118Z
3' end seq. 
>AFM118Z.Seq
XXXXXXXXXXTGGAAAAGTATACTTCACGTCAAAATGAGAATGTTTTTCATTCTTCATAA
ATATGATAAAGCCATGAACTATTCACCAGAGGTCCATGGGTTACGCCATTGAAATGGAGA
AAACTTTTGTAGAGTTCTTCCATACCGCCAAACAAATCCTTAGAGATTCTCCATTATCTT
TACCACAATTTTGGACTCAAGCTGAAAAGGATTTAAATAAACATCTTCAAAATGCAAATG
ACCAAGTTCATCAATTCATTCTTGATAACTTTAACACCTCTGACGCTTTGAAAACTTTAT
CAGATCTCGTCAATAAAACAAATGTTTACATTAGATCATGTGCTGAACAAAAGACAAATC
CAAGATTAAATTTAATTAGTGCAATCGCAGAGTATATCACTTACATTTTCTCTGTTTTCG
GTTTAACCGAATCTTCAACCGCCTCTTCAATGATTGGTTTCGGTTCCGCTGGTAAAGGTA
ATATCGAAGAGGAGATGACTCCAATCTTAAATGCTCTCACTCAATTCCGTTCAGAGGTAC
GTGCTTCTGCAATCGCAAAAGATACTACCTCAATCCTTAAAACTTGTGATAACCTTCGTG
ATGAGGTTTTACCATTATTGGGCGTAAAGATTGATGATAAATCCGCAACAACTGCAATGT
GGAAATTGAAGATAAAGAAACCCTCAAAAAAGAAATGAACAAAAGAAAGAAATNAAAAGA
AGAAACAAGC
Length of 3' end seq. 730
Connected seq. ID AFM118P
Connected seq. 
>AFM118P.Seq
AACCAAATCAAGAAAAACTAATAATATATTTAAGATGTCTGAAAATTCATCACCAAAATT
AGAATCAACATCAGCAGCAGCAGCAAGTACAAAAAAACCATTCCCAGAATGGATTAAACC
TAAAGGCAAAGAAACTGAATTATTAATTAATAATAGTTTAACAGGTGGTAAAGTACCATT
CGTTTTCAATGAAAGTGGTAAAGGTAGATCATTAACATGGTATGCTTGTGGTCCAACAGT
TTATGATGCATCACATATGGGTCATGCTAGAACTTATATTAGTTTTGATATCATTAGACG
TATTATGAAAAATTATCTTGGTTTCAATATCCAATATGTTATGAACATTACCGATATTGA
TGATAAAATCATTATTCGTGCAAATGAAAATGGTATTTCACATAGTGATCTTTCAAAAAA
ATGGGAGACTGCTTTCTTTGAAGATATGAAATTATTAAATGTATTACCACCAGATGCATT
AACCAAGAGTTACAGAATATGTACCACAAATTGTTGAATATGTTGAAAAGATTATTTCAA
ATGGATTTGCATATGAATCAAAT----------TGGAAAAGTATACTTCACGTCAAAATG
AGAATGTTTTTCATTCTTCATAAATATGATAAAGCCATGAACTATTCACCAGAGGTCCAT
GGGTTACGCCATTGAAATGGAGAAAACTTTTGTAGAGTTCTTCCATACCGCCAAACAAAT
CCTTAGAGATTCTCCATTATCTTTACCACAATTTTGGACTCAAGCTGAAAAGGATTTAAA
TAAACATCTTCAAAATGCAAATGACCAAGTTCATCAATTCATTCTTGATAACTTTAACAC
CTCTGACGCTTTGAAAACTTTATCAGATCTCGTCAATAAAACAAATGTTTACATTAGATC
ATGTGCTGAACAAAAGACAAATCCAAGATTAAATTTAATTAGTGCAATCGCAGAGTATAT
CACTTACATTTTCTCTGTTTTCGGTTTAACCGAATCTTCAACCGCCTCTTCAATGATTGG
TTTCGGTTCCGCTGGTAAAGGTAATATCGAAGAGGAGATGACTCCAATCTTAAATGCTCT
CACTCAATTCCGTTCAGAGGTACGTGCTTCTGCAATCGCAAAAGATACTACCTCAATCCT
TAAAACTTGTGATAACCTTCGTGATGAGGTTTTACCATTATTGGGCGTAAAGATTGATGA
TAAATCCGCAACAACTGCAATGTGGAAATTGAAGATAAAGAAACCCTCAAAAAAGAAATG
AACAAAAGAAAGAAATNAAAAGAAGAAACAAGC
Length of connected seq. 1283
Full length Seq ID -
Full length Seq. -
Length of full length seq. -