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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFA553
Library VF
(Link to library)
Clone ID VFA553
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12889-1
Original site URL
Representative seq. ID VFA553P
(Link to Original site)
Representative DNA sequence 
>VFA553 (VFA553Q) /CSM/VF/VFA5-C/VFA553Q.Seq.d/
ATTTTTTTTTTTAATTNAATTTTATTAAATACTTTTATTAAAAAAATAAATAATGTCAAC
AACANCAAATATTCAATTAAATAATTTAACAGCAATTTCACCAATTGATGGTAGATATTG
GGGACAAGTTCAGGTATTAAGNGAATATTTTTCANAGTATGCATTAATTAAATATCGGGT
TCAAGTTGAAATTGAATATTTCATTGAATTAAGTAAACTTTCANAATTGAAACCATTGAA
TGCAGTTAATAAGGAAGATGATCATAAGAAACTTAGAGATATTTATTTNCAATTTAAAGA
GAGNGATGCNCAAAAGATTAAACAAATTGAAAAAACCAXXXXXXXXXXAGTATTTCAATC
AAAAATTGGTCAAAGGTGAAGTCGGTAGTAGTACTATGCCTCACAAGGTAAATCCAATCG
ATTTTGAAAATGCCGAAGGTAATATGGGTGTAGCCAATGCACTCTATGAACATTTATCCG
CTAAATTACCAATCTCCCGTCTTCAAAGAGATTTAACCGACTCAACTGTACTCCGTTCTA
TTGGTGTACCTTTCTCACATTCTATCCTCTCCTTTAAATCAATTCAACGTGGTCTCTCAA
AATTAGTACTCAATGAAGCAAATATTGCAAAAGATCTCGATGCAAATTGGGCTGTAGTTA
GTGAAGCAATTCAAACTATCCTTCGTCGTGAAGGTTTCCCAAAACCATATGAAGCCTTAA
AAGAATTAACTCGTGTTAGTGGTAGTAAAAAAATTACTGAATCCNATATTCAAACTTTTA
TCGATTCTTTATCAATTCC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ffflixfy*illlkk*IMSTTXNIQLNNLTAISPIDGRYWGQVQVLXEYFSXYALIKYRV
QVEIEYFIELSKLSXLKPLNAVNKEDDHKKLRDIYXQFKEXDAQKIKQIEKT---

---YFNQKLVKGEVGSSTMPHKVNPIDFENAEGNMGVANALYEHLSAKLPISRLQRDLTD
STVLRSIGVPFSHSILSFKSIQRGLSKLVLNEANIAKDLDANWAVVSEAIQTILRREGFP
KPYEALKELTRVSGSKKITESXIQTFIDSLSI
Translated Amino Acid sequence (All Frames) 
Frame A:
ifffnxillntfikkinnvnnxkysik*fnsnftn*w*ilgtssgikxiffxvcin*isg
ss*n*ifh*ik*tfxietiecs**gr*s*et*rylfxi*rexcxkd*tn*kn---

---sisiknwskvksvvvlcltr*iqsilkmpkviwv*pmhsmniyplnyqspvfkei*p
tqlysvllvylshilssplnqfnvvsqn*ysmkqilqkismqigl*lvkqfklsfvvkvs
qnhmkp*kn*lvlvvvkkllnpifkllsilyqf

Frame B:
ffflixfy*illlkk*IMSTTXNIQLNNLTAISPIDGRYWGQVQVLXEYFSXYALIKYRV
QVEIEYFIELSKLSXLKPLNAVNKEDDHKKLRDIYXQFKEXDAQKIKQIEKT---

---vfqskigqr*sr**yyasqgksnrf*kcrr*ygcsqctl*tfir*itnlpsskrfnr
lnctpfywctfltfypll*instwslkistq*skyckrsrcklgcs**snsnypss*rfp
kti*slkrinsc*w**kny*ixysnfyrffins

Frame C:
fff*xnfikyfy*knk*cqqxqifn*ii*qqfhqlmvdigdkfry*xnifxsmh*lnigf
klklnisln*vnfxn*nh*mqlirkmiirnleifixnlkrxmxkrlnklkkp---

---YFNQKLVKGEVGSSTMPHKVNPIDFENAEGNMGVANALYEHLSAKLPISRLQRDLTD
STVLRSIGVPFSHSILSFKSIQRGLSKLVLNEANIAKDLDANWAVVSEAIQTILRREGFP
KPYEALKELTRVSGSKKITESXIQTFIDSLSI
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFA553 (VFA553Q) /CSM/VF/VFA5-C/VFA553Q.Seq.d/                       1364   0.0
VFJ122 (VFJ122Q) /CSM/VF/VFJ1-A/VFJ122Q.Seq.d/                        839   0.0
VFG840 (VFG840Q) /CSM/VF/VFG8-B/VFG840Q.Seq.d/                        839   0.0
SFH239 (SFH239Q) /CSM/SF/SFH2-B/SFH239Q.Seq.d/                        839   0.0
CHD445 (CHD445Q) /CSM/CH/CHD4-B/CHD445Q.Seq.d/                        839   0.0
CFJ829 (CFJ829Q) /CSM/CF/CFJ8-B/CFJ829Q.Seq.d/                        839   0.0
AFJ289 (AFJ289Q) /CSM/AF/AFJ2-D/AFJ289Q.Seq.d/                        839   0.0
AFI638 (AFI638Q) /CSM/AF/AFI6-B/AFI638Q.Seq.d/                        839   0.0
AFA851 (AFA851Q) /CSM/AF/AFA8-C/AFA851Q.Seq.d/                        839   0.0
AFA534 (AFA534Q) /CSM/AF/AFA5-B/AFA534Q.Seq.d/                        839   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF262050|AF262050.1 Plasmodium yoelii YM adenylosuccinate lyase (asl) gene, complete cds.    66  1e-12  3
AF033037|AF033037.1 Plasmodium falciparum merozoite surface protein 4, merozoite surface protein 5, merozoite surface protein 2, and adenylosuccinate lyase genes, complete cds.    58  1e-09  2
AE001385|AE001385.1 Plasmodium falciparum chromosome 2, section 22 of 73 of the complete sequence.    58  2e-09  2
AF262049|AF262049.1 Plasmodium berghei ANKA adenylosuccinate lyase (asl) gene, complete cds.    44  7e-08  4
AF262053|AF262053.1 Plasmodium gallinaceum adenylosuccinate lyase (asl) gene, partial cds.    58  2e-04  1
BI815436|BI815436.1 PfESToaa18f03.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:O15918 O15918 ADENYLOSUCCINATE LYASE ;, mRNA sequence.    58  2e-04  1
BQ633402|BQ633402.1 PfESToab41e01.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:O15918 O15918 ADENYLOSUCCINATE LYASE ;, mRNA sequence.    58  2e-04  1
BU495443|BU495443.1 PfESToab73a04.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:O15918 O15918 ADENYLOSUCCINATE LYASE ;, mRNA sequence.    58  2e-04  1
BQ633344|BQ633344.1 PfESToab40g06.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:O15918 O15918 ADENYLOSUCCINATE LYASE ;, mRNA sequence.    58  2e-04  1
BU496038|BU496038.1 PfESToac03a07.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:O15918 O15918 ADENYLOSUCCINATE LYASE ;, mRNA sequence.    58  2e-04  1
dna update 2003. 8.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54J34) RecName: Full=Adenylosuccinate lyase;          Short=AS...   287   2e-76
AP010656_568(AP010656|pid:none) Candidatus Azobacteroides pseudo...   211   3e-53
CU207366_1075(CU207366|pid:none) Gramella forsetii KT0803 comple...   209   6e-53
AM494941_49(AM494941|pid:none) Leishmania braziliensis chromosom...   204   2e-51
AL389894_46(AL389894|pid:none) Leishmania major Friedlin chromos...   204   3e-51
AM502222_45(AM502222|pid:none) Leishmania infantum chromosome 4....   202   1e-50
AP009380_1220(AP009380|pid:none) Porphyromonas gingivalis ATCC 3...   199   1e-49
CP000139_1577(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,...   198   1e-49
AP006841_4011(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,...   197   3e-49
AE015451_3976(AE015451|pid:none) Pseudomonas putida KT2440 compl...   190   4e-47
protein update 2009. 6.16
PSORT 

 psg: 0.84  gvh: 0.50  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  8.0 %: vacuolar

>> prediction for VFA553 is nuc
5' end seq. ID VFA553F
5' end seq. 
>VFA553F.Seq
ATTTTTTTTTTTAATTNAATTTTATTAAATACTTTTATTAAAAAAATAAATAATGTCAAC
AACANCAAATATTCAATTAAATAATTTAACAGCAATTTCACCAATTGATGGTAGATATTG
GGGACAAGTTCAGGTATTAAGNGAATATTTTTCANAGTATGCATTAATTAAATATCGGGT
TCAAGTTGAAATTGAATATTTCATTGAATTAAGTAAACTTTCANAATTGAAACCATTGAA
TGCAGTTAATAAGGAAGATGATCATAAGAAACTTAGAGATATTTATTTNCAATTTAAAGA
GAGNGATGCNCAAAAGATTAAACAAATTGAAAAAACCA----------
Length of 5' end seq. 338
3' end seq. ID VFA553Z
3' end seq. 
>VFA553Z.Seq
----------AGTATTTCAATCAAAAATTGGTCAAAGGTGAAGTCGGTAGTAGTACTATG
CCTCACAAGGTAAATCCAATCGATTTTGAAAATGCCGAAGGTAATATGGGTGTAGCCAAT
GCACTCTATGAACATTTATCCGCTAAATTACCAATCTCCCGTCTTCAAAGAGATTTAACC
GACTCAACTGTACTCCGTTCTATTGGTGTACCTTTCTCACATTCTATCCTCTCCTTTAAA
TCAATTCAACGTGGTCTCTCAAAATTAGTACTCAATGAAGCAAATATTGCAAAAGATCTC
GATGCAAATTGGGCTGTAGTTAGTGAAGCAATTCAAACTATCCTTCGTCGTGAAGGTTTC
CCAAAACCATATGAAGCCTTAAAAGAATTAACTCGTGTTAGTGGTAGTAAAAAAATTACT
GAATCCNATATTCAAACTTTTATCGATTCTTTATCAATTCC
Length of 3' end seq. 451
Connected seq. ID VFA553P
Connected seq. 
>VFA553P.Seq
ATTTTTTTTTTTAATTNAATTTTATTAAATACTTTTATTAAAAAAATAAATAATGTCAAC
AACANCAAATATTCAATTAAATAATTTAACAGCAATTTCACCAATTGATGGTAGATATTG
GGGACAAGTTCAGGTATTAAGNGAATATTTTTCANAGTATGCATTAATTAAATATCGGGT
TCAAGTTGAAATTGAATATTTCATTGAATTAAGTAAACTTTCANAATTGAAACCATTGAA
TGCAGTTAATAAGGAAGATGATCATAAGAAACTTAGAGATATTTATTTNCAATTTAAAGA
GAGNGATGCNCAAAAGATTAAACAAATTGAAAAAACCA----------AGTATTTCAATC
AAAAATTGGTCAAAGGTGAAGTCGGTAGTAGTACTATGCCTCACAAGGTAAATCCAATCG
ATTTTGAAAATGCCGAAGGTAATATGGGTGTAGCCAATGCACTCTATGAACATTTATCCG
CTAAATTACCAATCTCCCGTCTTCAAAGAGATTTAACCGACTCAACTGTACTCCGTTCTA
TTGGTGTACCTTTCTCACATTCTATCCTCTCCTTTAAATCAATTCAACGTGGTCTCTCAA
AATTAGTACTCAATGAAGCAAATATTGCAAAAGATCTCGATGCAAATTGGGCTGTAGTTA
GTGAAGCAATTCAAACTATCCTTCGTCGTGAAGGTTTCCCAAAACCATATGAAGCCTTAA
AAGAATTAACTCGTGTTAGTGGTAGTAAAAAAATTACTGAATCCNATATTCAAACTTTTA
TCGATTCTTTATCAATTCC
Length of connected seq. 789
Full length Seq ID -
Full length Seq. -
Length of full length seq. -