VFA552
Library VF
(Link to library)
Clone ID VFA552
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16013-1
Original site URL
Representative seq. ID VFA552F
(Link to Original site)
Representative DNA sequence
>VFA552 (VFA552Q) /CSM/VF/VFA5-C/VFA552Q.Seq.d/
CAAAACTCTCGAGATTTCTCTAAATAAATTNATTTTAGTAGAACCTCTTATAGTTATTGT
TAGAATTTCTTTCTCTATCTATTCTTTTAGGTTGTCTCTCTTTAATACAATAACAGTTTT
TTTAAAAAACTTTCCTTTTAATATATAAATAAACATGTCTTTCAGAGGTGGTCGTGGTGG
TTTTGGCGGTGGTGATCGTGGTGGCCGTGGAGGTGGTCGTGGTGGTTTTGGTGGTGGTGA
CCGTGGTGGCCGCGGCGGTTTTGGCGGAGGCCGTGGTGGTGGTCGNGGTGGTTTTGGTGG
XXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
ktleislnkxilveplivivrisfsiysfrlslfntitvflknfpfni*INMSFRGGRGG
FGGGDRGGRGGGRGGFGGGDRGGRGGFGGGRGGGRGGFG---


Translated Amino Acid sequence (All Frames)
Frame A:
qnsrdfsk*ixfsrtsysyc*nfflylff*vvsl*ynnsffkklsf*yinkhvfqrwsww
fwrw*swwpwrwswwfwww*pwwprrfwrrpwwwsxwfw---


Frame B:
ktleislnkxilveplivivrisfsiysfrlslfntitvflknfpfni*INMSFRGGRGG
FGGGDRGGRGGGRGGFGGGDRGGRGGFGGGRGGGRGGFG---


Frame C:
klsrfl*inxf**nll*llleflslsillgclsliq*qff*ktflliyk*tclsevvvvv
lavvivvavevvvvvlvvvtvvaaavlaeavvvvxvvlv---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFA552 (VFA552Q) /CSM/VF/VFA5-C/VFA552Q.Seq.d/ 278 5e-74
VSI353 (VSI353Q) /CSM/VS/VSI3-C/VSI353Q.Seq.d/ 264 7e-70
VFB146 (VFB146Q) /CSM/VF/VFB1-B/VFB146Q.Seq.d/ 264 7e-70
FC-BJ07 (FC-BJ07Q) /CSM/FC/FC-BJ/FC-BJ07Q.Seq.d/ 264 7e-70
CHN585 (CHN585Q) /CSM/CH/CHN5-D/CHN585Q.Seq.d/ 36 0.30
VSI611 (VSI611Q) /CSM/VS/VSI6-A/VSI611Q.Seq.d/ 34 1.2
VSH517 (VSH517Q) /CSM/VS/VSH5-A/VSH517Q.Seq.d/ 34 1.2
VSC762 (VSC762Q) /CSM/VS/VSC7-C/VSC762Q.Seq.d/ 34 1.2
VHN796 (VHN796Q) /CSM/VH/VHN7-D/VHN796Q.Seq.d/ 34 1.2
VHI611 (VHI611Q) /CSM/VH/VHI6-A/VHI611Q.Seq.d/ 34 1.2

own update 2002.12.15
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC095342|AC095342.6 Rattus norvegicus clone CH230-131D19, WORKING DRAFT SEQUENCE, 2 unordered pieces. 46 0.25 1
BE116518|BE116518.1 UI-R-BS1-ayj-b-11-0-UI.s1 UI-R-BS1 Rattus norvegicus cDNA clone UI-R-BS1-ayj-b-11-0-UI 3', mRNA sequence. 46 0.25 1
AL493608|AL493608.1 T. brucei sheared genomic DNA clone 348d09, forward sequence. 38 0.32 2
AL490969|AL490969.1 T. brucei sheared genomic DNA clone 324b08, reverse sequence. 38 0.33 2
BI745930|BI745930.1 rm20e01.y1 Meloidogyne arenaria egg pAMP1 v1 Chiapelli McCarter Meloidogyne arenaria cDNA 5', mRNA sequence. 44 0.98 1
AC116175|AC116175.3 Homo sapiens BAC clone RP11-203C9 from 4, complete sequence. 44 0.98 1
AW641794|AW641794.1 cm11d09.w1 Blackshear/Soares normalized Xenopus egg library Xenopus laevis cDNA clone PBX0110D09 5', mRNA sequence. 40 1.0 2
AC126510|AC126510.2 Rattus norvegicus clone CH230-295K5, WORKING DRAFT SEQUENCE, 1 ordered piece. 42 3.9 1
R60976|R60976.1 yh09d06.s1 Soares infant brain 1NIB Homo sapiens cDNA clone IMAGE:42724 3', mRNA sequence. 42 3.9 1
G23363|G23363.1 human STS WI-14664, sequence tagged site. 42 3.9 1
dna update 2003. 8.16
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 149,459,372
protein update 2009. 6.16
PSORT

psg: 0.62 gvh: 0.28 alm: 0.71 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: nuclear
24.0 %: mitochondrial
24.0 %: cytoplasmic
16.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for VFA552 is nuc

5' end seq. ID VFA552F
5' end seq.
>VFA552F.Seq
CAAAACTCTCGAGATTTCTCTAAATAAATTNATTTTAGTAGAACCTCTTATAGTTATTGT
TAGAATTTCTTTCTCTATCTATTCTTTTAGGTTGTCTCTCTTTAATACAATAACAGTTTT
TTTAAAAAACTTTCCTTTTAATATATAAATAAACATGTCTTTCAGAGGTGGTCGTGGTGG
TTTTGGCGGTGGTGATCGTGGTGGCCGTGGAGGTGGTCGTGGTGGTTTTGGTGGTGGTGA
CCGTGGTGGCCGCGGCGGTTTTGGCGGAGGCCGTGGTGGTGGTCGNGGTGGTTTTGGTGG
----------
Length of 5' end seq. 300
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -