>VFA519 (VFA519Q) /CSM/VF/VFA5-A/VFA519Q.Seq.d/
CTATCTCTCTATATATATATACCCACATAAAATGTCAATACCAAAAATTAGTCAAGTTAA
AGATTTAACACGTATTGAAAGAATTGGAGCACATTCACATATTAGAGGATTAGGAATTGA
TGATTCATTAGAACCAAGAGAGATATCTCAAGGTATGGTTGGACAAGTTGGAGCAAGAAA
AGCAGCAGGATTAATATTACAAATGATAAAGGAAGGTAAGATAGCAGGTAGAGCAATATT
AATTGGAGGTGAACCAGGTACAGGTAAGACAGCGATTGCCATGGGTATGGCACAATCATT
AGGAGAGAAGACTCCATTTACAGCAATTGCAGCCAGTGAAATATTTTCATTGGAAATGAG
TAAAACCGAAGCATTAACACAAGCATTCCGTCGTTCAATTGGCGTACGTATTAAAGAAGA
GACAGAGGTGATTTGTGGTGAAGTCGTAGATATACAAATCGATAGACCAGCAACAGGTAG
CGGAGCAAAAGTTGGTAAACTCACATTGAAAACCACATCAATGGATGCATTATATGATTT
GGGTGCAAAGATGATCGACTCACTCAXXXXXXXXXX

YLSIYIYPHKMSIPKISQVKDLTRIERIGAHSHIRGLGIDDSLEPREISQGMVGQVGARK
AAGLILQMIKEGKIAGRAILIGGEPGTGKTAIAMGMAQSLGEKTPFTAIAASEIFSLEMS
KTEALTQAFRRSIGVRIKEETEVICGEVVDIQIDRPATGSGAKVGKLTLKTTSMDALYDL
GAKMIDSL---

Frame A:
lslyiyipt*nvntkn*ss*rfnty*knwstfty*rirn**firtkrdisrygwtswskk
ssrinitndkgr*dsr*sninwr*tryr*dsdchgygtiirredsiysncsq*nifigne
*nrsintsipsfnwrty*rrdrgdlw*srrytnr*tsnr*rsksw*thienhingcii*f
gckddrlt---


Frame B:
YLSIYIYPHKMSIPKISQVKDLTRIERIGAHSHIRGLGIDDSLEPREISQGMVGQVGARK
AAGLILQMIKEGKIAGRAILIGGEPGTGKTAIAMGMAQSLGEKTPFTAIAASEIFSLEMS
KTEALTQAFRRSIGVRIKEETEVICGEVVDIQIDRPATGSGAKVGKLTLKTTSMDALYDL
GAKMIDSL---


Frame C:
islyiythikcqyqklvklki*hvlkelehihiled*elmih*nqerylkvwldkleqek
qqd*yyk**rkvr*qveqy*levnqvqvrqrlpwvwhnh*errlhlqqlqpvkyfhwk*v
kpkh*hkhsvvqlayvlkkrqr*fvvks*iyksidqqqvaeqklvnsh*kphqwmhymiw
vqr*sth---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFF618 (VFF618Q) /CSM/VF/VFF6-A/VFF618Q.Seq.d/                       1080   0.0
VFA519 (VFA519Q) /CSM/VF/VFA5-A/VFA519Q.Seq.d/                       1080   0.0
SFD887 (SFD887Q) /CSM/SF/SFD8-D/SFD887Q.Seq.d/                       1080   0.0
AFL591 (AFL591Q) /CSM/AF/AFL5-D/AFL591Q.Seq.d/                       1080   0.0
AFK454 (AFK454Q) /CSM/AF/AFK4-C/AFK454Q.Seq.d/                       1080   0.0
SFD675 (SFD675Q) /CSM/SF/SFD6-D/SFD675Q.Seq.d/                       1072   0.0
CHC484 (CHC484Q) /CSM/CH/CHC4-D/CHC484Q.Seq.d/                       1066   0.0
SFG570 (SFG570Q) /CSM/SF/SFG5-C/SFG570Q.Seq.d/                       1065   0.0
SFJ220 (SFJ220Q) /CSM/SF/SFJ2-A/SFJ220Q.Seq.d/                       1059   0.0
SFC365 (SFC365Q) /CSM/SF/SFC3-C/SFC365Q.Seq.d/                       1031   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BU722212|BU722212.1 SJMAEH02 SJM Schistosoma japonicum cDNA, mRNA sequence.    54  8e-10  3
BU799415|BU799415.1 SJF2BNC08 SJF Schistosoma japonicum cDNA, mRNA sequence.    54  1e-07  3
BU724315|BU724315.1 SJMBFH01 SJM Schistosoma japonicum cDNA, mRNA sequence.    54  2e-07  3
BU724139|BU724139.1 SJMBDH10 SJM Schistosoma japonicum cDNA, mRNA sequence.    54  3e-07  3
BU804312|BU804312.1 SJFBJH04 SJF Schistosoma japonicum cDNA, mRNA sequence.    54  3e-07  3
BU795008|BU795008.1 SJF2DJG06 SJF Schistosoma japonicum cDNA, mRNA sequence.    54  3e-07  3
BU795521|BU795521.1 SJF2DPD04 SJF Schistosoma japonicum cDNA, mRNA sequence.    54  3e-07  3
BU793866|BU793866.1 SJF2BUD05 SJF Schistosoma japonicum cDNA, mRNA sequence.    54  4e-07  3
BU795746|BU795746.1 SJF2DUG07 SJF Schistosoma japonicum cDNA, mRNA sequence.    54  4e-07  3
AF218071|AF218071.1 Xenopus laevis reptin mRNA, complete cds.     48  3e-06  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54UW5) RecName: Full=RuvB-like helicase 2;          EC=3.6.1.-;     339   3e-92
BC123265_1(BC123265|pid:none) Xenopus laevis reptin, mRNA (cDNA ...   289   3e-77
CR761457_1(CR761457|pid:none) Xenopus tropicalis finished cDNA, ...   289   3e-77
BC047966_1(BC047966|pid:none) Xenopus laevis RuvB-like protein 2...   288   7e-77
(Q9DE27) RecName: Full=RuvB-like 2;          EC=3.6.1.-; AltName...   288   7e-77
BC008355_1(BC008355|pid:none) Homo sapiens RuvB-like 2 (E. coli)...   283   2e-75
(Q9Y230) RecName: Full=RuvB-like 2;          EC=3.6.1.-; AltName...   283   2e-75
AF151804_1(AF151804|pid:none) Homo sapiens CGI-46 protein mRNA, ...   283   2e-75
BC098042_1(BC098042|pid:none) Rattus norvegicus RuvB-like 2 (E. ...   281   7e-75
(P83571) RecName: Full=RuvB-like 2;          EC=3.6.1.-; AltName...   281   1e-74

 psg: 0.73  gvh: 0.37  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for VFA519 is cyt

>VFA519F.Seq
CTATCTCTCTATATATATATACCCACATAAAATGTCAATACCAAAAATTAGTCAAGTTAA
AGATTTAACACGTATTGAAAGAATTGGAGCACATTCACATATTAGAGGATTAGGAATTGA
TGATTCATTAGAACCAAGAGAGATATCTCAAGGTATGGTTGGACAAGTTGGAGCAAGAAA
AGCAGCAGGATTAATATTACAAATGATAAAGGAAGGTAAGATAGCAGGTAGAGCAATATT
AATTGGAGGTGAACCAGGTACAGGTAAGACAGCGATTGCCATGGGTATGGCACAATCATT
AGGAGAGAAGACTCCATTTACAGCAATTGCAGCCAGTGAAATATTTTCATTGGAAATGAG
TAAAACCGAAGCATTAACACAAGCATTCCGTCGTTCAATTGGCGTACGTATTAAAGAAGA
GACAGAGGTGATTTGTGGTGAAGTCGTAGATATACAAATCGATAGACCAGCAACAGGTAG
CGGAGCAAAAGTTGGTAAACTCACATTGAAAACCACATCAATGGATGCATTATATGATTT
GGGTGCAAAGATGATCGACTCACTCA----------