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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM106
Library AF
(Link to library)
Clone ID AFM106
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM106P
(Link to Original site)
Representative DNA sequence 
>AFM106 (AFM106Q) /CSM/AF/AFM1-A/AFM106Q.Seq.d/
AATTTTTTTTCTTTTCCGAAAACATCACCACACCAAATTTATATATATATATATCTAAAA
AAAATGTTTTGGGGTATTGAAATTAGTAAAGTTCCAGTTAAATTTACACCAGCTTTTGAC
CTTCACATTACAACAGCATGTTTATCAGCTGTTGCCAAAGATACTGGTCGTAATGTATTA
CAAGTTAAATATGATGGCAAAACATACAGTCTTTGTTCATTAAAATTAAATGCAACTGAA
CACAGTGTTTTAGATACCAATTTTGAAGAAGGTAAAGAAGTTGAATTCTCTGTCAGTGGT
AATAACACTATCTGTTTAACTGGTTATTTTGTTGATTCAATGTTTGGTGATGATGAACAT
GGTGAAGATGAAGATAATGAAGAAGAAGAAGGTGAAGAAGGTGAAGATGAAGAAATGGAA
GGTGAAGACGAAGATGAAGATGAAGAAGATGAAGATGAAGAAGATGAAGATGAAGAAGAA
GAAGACGATGAAGAAGATGATGAAATTAATAAAGAATXXXXXXXXXXACCACCACTNCAA
CTAAACAAACTACNCCAGNTAAACCAGCTGNTAAACCAGTCNCTNCAACCAAACCAGTCA
CTNCAACTNAACCAGTTNAANCTNCTGTTNTTNAAAAAAAAAAACCAACTTNATCAGTTG
TCNCATTACCAAGTGGTTTACAANATGAANATTTAGTCGTTGGTTNTGGTCCATCNCCAA
ANANCGGTAAAAAGGTTGGTGTCAAANACATTGGTNAACTTACTAATGGTAAAACTTTTG
ATTCCNCCCTTNGNACNCCATTCNCNTTCCGNATTGGNANCAAANAAGTCATCAGGGGTT
GGGANATCGGTGTTGCCNCAATGAAAGTTGGTGGAAAAANAANATTAACAATTCCAGCTG
ATTTAGCCTATGGTANATCTGGNGCCCCNCCATCAATTCCNCCAAANGCTACNTTAATCT
TTGANGNCGAATTAGNATCATGNGCNCAATAAATTAATTAATAACAAAATTAAAATTAAA
ATAAAAAAAAAATAAAAAAAAAAA
sequence update 2009. 4. 3
Translated Amino Acid sequence 
NFFSFPKTSPHQIYIYIYLKKMFWGIEISKVPVKFTPAFDLHITTACLSAVAKDTGRNVL
QVKYDGKTYSLCSLKLNATEHSVLDTNFEEGKEVEFSVSGNNTICLTGYFVDSMFGDDEH
GEDEDNEEEEGEEGEDEEMEGEDEDEDEEDEDEEDEDEEEEDDEEDDEINKE---

---TTTXTKQTTPXKPAXKPVXXTKPVTXTXPVXXXVXXKKKPTXSVVXLPSGLQXEXLV
VGXGPSPXXGKKVGVKXIGXLTNGKTFDSXLXTPFXFRIGXKXVIRGWXIGVAXMKVGGK
XXLTIPADLAYGXSGAPPSIPPXATLIFXXELXSXAQ*in**qn*n*nkkkikkk
Translated Amino Acid sequence (All Frames) 
Frame A:
NFFSFPKTSPHQIYIYIYLKKMFWGIEISKVPVKFTPAFDLHITTACLSAVAKDTGRNVL
QVKYDGKTYSLCSLKLNATEHSVLDTNFEEGKEVEFSVSGNNTICLTGYFVDSMFGDDEH
GEDEDNEEEEGEEGEDEEMEGEDEDEDEEDEDEEDEDEEEEDDEEDDEINKE---

---TTTXTKQTTPXKPAXKPVXXTKPVTXTXPVXXXVXXKKKPTXSVVXLPSGLQXEXLV
VGXGPSPXXGKKVGVKXIGXLTNGKTFDSXLXTPFXFRIGXKXVIRGWXIGVAXMKVGGK
XXLTIPADLAYGXSGAPPSIPPXATLIFXXELXSXAQ*in**qn*n*nkkkikkk

Frame B:
ifflfrkhhhtkfiyiyi*kkcfgvlklvkfqlnlhqlltftlqqhvyqllpkilvvmyy
klnmmakhtvfvh*n*mqlntvf*ipilkkvkklnslsvvitlsv*lvilliqclvmmnm
vkmkimkkkkvkkvkmkkwkvktkmkmkkmkmkkmkmkkkktmkkmmklikn---

---pplqlnklxqxnqlxnqslqpnqslqlnqxxllxxkkknqlxqlshyqvvyxmxi*s
lvxvhxqxxvkrlvsxtlvnllmvkllippxxxhsxsxlxxxkssgvgxsvlpq*klvek
xx*qfqli*pmvxlxpxhqfxqxlx*slxxn*xhxxnklinnkikikikkk*kkk

Frame C:
ffffsenittpnlyiyiskknvlgy*n**sss*iytsf*pshynsmfisccqryws*cit
s*i*wqniqslfikikcn*tqcfryqf*rr*rs*ilcqw**hylfnwlfc*fnvw***tw
*r*r**rrrr*rr*r*rngr*rrr*r*rr*r*rr*r*rrrrr*rr**n**r---

---hhxn*tnyxx*tsx*tsxxnqtshxnxtsxxxcxxkkktnxiscxitkwftx*xfsr
wxwsixkxr*kgwcqxhwxty*w*nf*fxpxxxixxpxwxqxshqglgxrccxneswwkx
xinnss*fslwxiwxpxinsxkxyxnl*xriximxxin*litklklk*kknkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLB410 (SLB410Q) /CSM/SL/SLB4-A/SLB410Q.Seq.d/                        591   e-168
SFK630 (SFK630Q) /CSM/SF/SFK6-B/SFK630Q.Seq.d/                        591   e-168
SFJ632 (SFJ632Q) /CSM/SF/SFJ6-B/SFJ632Q.Seq.d/                        591   e-168
SFJ532 (SFJ532Q) /CSM/SF/SFJ5-B/SFJ532Q.Seq.d/                        591   e-168
SFH452 (SFH452Q) /CSM/SF/SFH4-C/SFH452Q.Seq.d/                        591   e-168
SFG246 (SFG246Q) /CSM/SF/SFG2-B/SFG246Q.Seq.d/                        591   e-168
SFF885 (SFF885Q) /CSM/SF/SFF8-D/SFF885Q.Seq.d/                        591   e-168
SFE395 (SFE395Q) /CSM/SF/SFE3-D/SFE395Q.Seq.d/                        591   e-168
SFD696 (SFD696Q) /CSM/SF/SFD6-D/SFD696Q.Seq.d/                        591   e-168
CFK342 (CFK342Q) /CSM/CF/CFK3-B/CFK342Q.Seq.d/                        591   e-168
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ390427) Dictyostelium discoideum cDNA clone:dds22k08, 5' ...   557   e-165  2
(BJ358484) Dictyostelium discoideum cDNA clone:ddc1c19, 5' e...   557   e-165  2
(BJ329481) Dictyostelium discoideum cDNA clone:dda25k01, 5' ...   557   e-165  2
(BJ391203) Dictyostelium discoideum cDNA clone:dds15h14, 5' ...   557   e-165  2
(BJ346811) Dictyostelium discoideum cDNA clone:dda25k01, 3' ...   474   e-164  2
(BJ329101) Dictyostelium discoideum cDNA clone:dda30e20, 5' ...   549   e-162  2
(BJ388318) Dictyostelium discoideum cDNA clone:dds8o24, 5' e...   557   e-161  2
(BJ388515) Dictyostelium discoideum cDNA clone:dds9n23, 5' e...   557   e-161  2
(BJ387216) Dictyostelium discoideum cDNA clone:dds12j22, 5' ...   557   e-161  2
(BJ389884) Dictyostelium discoideum cDNA clone:dds20o07, 5' ...   557   e-160  2
dna update 2009. 4. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P0C1J6) RecName: Full=FK506-binding protein 4;          EC=5.2....    77   7e-13
CP000148_2337(CP000148|pid:none) Geobacter metallireducens GS-15...    74   8e-12
CP001131_1789(CP001131|pid:none) Anaeromyxobacter sp. K, complet...    70   9e-11
CP001390_3055(CP001390|pid:none) Geobacter sp. FRC-32, complete ...    70   1e-10
CP001344_3584(CP001344|pid:none) Cyanothece sp. PCC 7425, comple...    70   1e-10
CP001029_5085(CP001029|pid:none) Methylobacterium populi BJ001, ...    70   1e-10
CP000283_2530(CP000283|pid:none) Rhodopseudomonas palustris BisB...    70   1e-10
CP000908_4585(CP000908|pid:none) Methylobacterium extorquens PA1...    70   1e-10
CP000698_1762(CP000698|pid:none) Geobacter uraniireducens Rf4, c...    69   2e-10
CP000806_3024(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    69   2e-10
protein update 2009. 4. 4
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM106 is

5' end seq. ID AFM106F
5' end seq. 
>AFM106F.Seq
AATTTTTTTTCTTTTCCGAAAACATCACCACACCAAATTTATATATATATATATCTAAAA
AAAATGTTTTGGGGTATTGAAATTAGTAAAGTTCCAGTTAAATTTACACCAGCTTTTGAC
CTTCACATTACAACAGCATGTTTATCAGCTGTTGCCAAAGATACTGGTCGTAATGTATTA
CAAGTTAAATATGATGGCAAAACATACAGTCTTTGTTCATTAAAATTAAATGCAACTGAA
CACAGTGTTTTAGATACCAATTTTGAAGAAGGTAAAGAAGTTGAATTCTCTGTCAGTGGT
AATAACACTATCTGTTTAACTGGTTATTTTGTTGATTCAATGTTTGGTGATGATGAACAT
GGTGAAGATGAAGATAATGAAGAAGAAGAAGGTGAAGAAGGTGAAGATGAAGAAATGGAA
GGTGAAGACGAAGATGAAGATGAAGAAGATGAAGATGAAGAAGATGAAGATGAAGAAGAA
GAAGACGATGAAGAAGATGATGAAATTAATAAAGAATXXXXXXXXXX
Length of 5' end seq. 527
3' end seq. ID AFM106Z
3' end seq. 
>AFM106Z.Seq
XXXXXXXXXXACCACCACTNCAACTAAACAAACTACNCCAGNTAAACCAGCTGNTAAACC
AGTCNCTNCAACCAAACCAGTCACTNCAACTNAACCAGTTNAANCTNCTGTTNTTNAAAA
AAAAAAACCAACTTNATCAGTTGTCNCATTACCAAGTGGTTTACAANATGAANATTTAGT
CGTTGGTTNTGGTCCATCNCCAAANANCGGTAAAAAGGTTGGTGTCAAANACATTGGTNA
ACTTACTAATGGTAAAACTTTTGATTCCNCCCTTNGNACNCCATTCNCNTTCCGNATTGG
NANCAAANAAGTCATCAGGGGTTGGGANATCGGTGTTGCCNCAATGAAAGTTGGTGGAAA
AANAANATTAACAATTCCAGCTGATTTAGCCTATGGTANATCTGGNGCCCCNCCATCAAT
TCCNCCAAANGCTACNTTAATCTTTGANGNCGAATTAGNATCATGNGCNCAATAAATTAA
TTAATAACAAAATTAAAATTAAAATAAAAAAAAAATAAAAAAAAAAA
Length of 3' end seq. 527
Connected seq. ID AFM106P
Connected seq. 
>AFM106P.Seq
AATTTTTTTTCTTTTCCGAAAACATCACCACACCAAATTTATATATATATATATCTAAAA
AAAATGTTTTGGGGTATTGAAATTAGTAAAGTTCCAGTTAAATTTACACCAGCTTTTGAC
CTTCACATTACAACAGCATGTTTATCAGCTGTTGCCAAAGATACTGGTCGTAATGTATTA
CAAGTTAAATATGATGGCAAAACATACAGTCTTTGTTCATTAAAATTAAATGCAACTGAA
CACAGTGTTTTAGATACCAATTTTGAAGAAGGTAAAGAAGTTGAATTCTCTGTCAGTGGT
AATAACACTATCTGTTTAACTGGTTATTTTGTTGATTCAATGTTTGGTGATGATGAACAT
GGTGAAGATGAAGATAATGAAGAAGAAGAAGGTGAAGAAGGTGAAGATGAAGAAATGGAA
GGTGAAGACGAAGATGAAGATGAAGAAGATGAAGATGAAGAAGATGAAGATGAAGAAGAA
GAAGACGATGAAGAAGATGATGAAATTAATAAAGAAT----------ACCACCACTNCAA
CTAAACAAACTACNCCAGNTAAACCAGCTGNTAAACCAGTCNCTNCAACCAAACCAGTCA
CTNCAACTNAACCAGTTNAANCTNCTGTTNTTNAAAAAAAAAAACCAACTTNATCAGTTG
TCNCATTACCAAGTGGTTTACAANATGAANATTTAGTCGTTGGTTNTGGTCCATCNCCAA
ANANCGGTAAAAAGGTTGGTGTCAAANACATTGGTNAACTTACTAATGGTAAAACTTTTG
ATTCCNCCCTTNGNACNCCATTCNCNTTCCGNATTGGNANCAAANAAGTCATCAGGGGTT
GGGANATCGGTGTTGCCNCAATGAAAGTTGGTGGAAAAANAANATTAACAATTCCAGCTG
ATTTAGCCTATGGTANATCTGGNGCCCCNCCATCAATTCCNCCAAANGCTACNTTAATCT
TTGANGNCGAATTAGNATCATGNGCNCAATAAATTAATTAATAACAAAATTAAAATTAAA
ATAAAAAAAAAATAAAAAAAAAAA
Length of connected seq. 1034
Full length Seq ID -
Full length Seq. -
Length of full length seq. -