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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM105
Library AF
(Link to library)
Clone ID AFM105
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AFM105 (AFM105Q) /CSM/AF/AFM1-A/AFM105Q.Seq.d/
XXXXXXXXXXATCAATATAGTTTATAACTCAACCCAACGTTATGATGTTAGAAAAAACGT
TTGGACAGAACTCAATCAAACTTCATTCCAACAAAACCTTGCCAATCGTTCAGTTGAAGC
CGAAACCGTCTCCAAAACAGGTAAATCTTATGCTTTCAGTGGTTCAACTTCAACCTTACC
AGCCTTCATTCGTGTTCCAGGTGCCCTTAAAACTGATACCATTGTTTTTGATTCTGTCAA
TGGATGGCAACAAGTCGTTGTAGTAGGTGCATCACCAACCCCAAGAGCTCATCATCATTT
ACACTATAATGAAGAATTAGATTCAATTTTCACCTATGGCGGCTATACCAATTGTAGTAC
CTACACCACCAATGAATGTAATTATCTTGGCGATTTATGGAGTCTTGATTTATCAACAAA
AGTTTGGAAGCAACATCTCTTTGATGTAACCAAAGGACCAGGAAATAGAGATAATGCCAA
ATTCATTTATTCCGATCAAAATCAACTTTTCTTAATTGGTGGAAGTAATTATCAATACAC
CAACTTTATGGATGTATGGCGTTTTGATTTAATTACAAATGAATGGACTCAATTAACCAT
TTTACCATTAGTTGATCCAGAAACTTATATTCAAACTCCAATTCCAAGTACAATCGGTAG
CTTCTATTTCAAACATATCAGAAAATGTAGTGTAGAATTTTACTTTAGCAGAGGTTCACT
CAGGAAATTTCAGGAAGTCCAT
sequence update 2009. 4. 3
Translated Amino Acid sequence 
---NIVYNSTQRYDVRKNVWTELNQTSFQQNLANRSVEAETVSKTGKSYAFSGSTSTLPA
FIRVPGALKTDTIVFDSVNGWQQVVVVGASPTPRAHHHLHYNEELDSIFTYGGYTNCSTY
TTNECNYLGDLWSLDLSTKVWKQHLFDVTKGPGNRDNAKFIYSDQNQLFLIGGSNYQYTN
FMDVWRFDLITNEWTQLTILPLVDPETYIQTPIPSTIGSFYFKHIRKCSVEFYFSRGSLR
KFQEVH
Translated Amino Acid sequence (All Frames) 
Frame A:
---si*fitqpnvmmlektfgqnsiklhsnktlpivqlkpkpspkqvnlmlsvvqlqpyq
psfvfqvplkliplflilsmdgnksl**vhhqpqeliiiytimkn*iqfspmaaipivvp
tppmnviilaiygvliyqqkfgsnislm*pkdqeieimpnsfipikinfs*lveviintp
tlwmygvli*lqmngln*pfyh*liqklifklqfqvqsvasisnisenvv*nftlaevhs
gnfrks


Frame B:
---qysl*lnptl*c*kkrldrtqsnfiptkpcqsfs*srnrlqnr*ilcfqwfnfnlts
lhscsrcp*n*yhcf*fcqwmatsrcsrcitnpkssssftl**rirfnfhlwrlyql*yl
hhq*m*lswrfmes*finksleatsl*cnqrtrk*r*cqihlfrskstflnwwk*lsihq
lygcmaf*fnyk*mdsinhftis*srnlysnsnskynr*llfqtyqkm*crill*qrftq
eisgsp


Frame C:
---NIVYNSTQRYDVRKNVWTELNQTSFQQNLANRSVEAETVSKTGKSYAFSGSTSTLPA
FIRVPGALKTDTIVFDSVNGWQQVVVVGASPTPRAHHHLHYNEELDSIFTYGGYTNCSTY
TTNECNYLGDLWSLDLSTKVWKQHLFDVTKGPGNRDNAKFIYSDQNQLFLIGGSNYQYTN
FMDVWRFDLITNEWTQLTILPLVDPETYIQTPIPSTIGSFYFKHIRKCSVEFYFSRGSLR
KFQEVH
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM105 (AFM105Q) /CSM/AF/AFM1-A/AFM105Q.Seq.d/                       1451   0.0
VFG609 (VFG609Q) /CSM/VF/VFG6-A/VFG609Q.Seq.d/                       1435   0.0
VFD390 (VFD390Q) /CSM/VF/VFD3-D/VFD390Q.Seq.d/                       1435   0.0
VFF560 (VFF560Q) /CSM/VF/VFF5-C/VFF560Q.Seq.d/                       1356   0.0
VFJ254 (VFJ254Q) /CSM/VF/VFJ2-C/VFJ254Q.Seq.d/                       1318   0.0
VFD781 (VFD781Q) /CSM/VF/VFD7-D/VFD781Q.Seq.d/                       1318   0.0
VFA714 (VFA714Q) /CSM/VF/VFA7-A/VFA714Q.Seq.d/                       1314   0.0
VFB257 (VFB257Q) /CSM/VF/VFB2-C/VFB257Q.Seq.d/                       1308   0.0
AFA880 (AFA880Q) /CSM/AF/AFA8-D/AFA880Q.Seq.d/                       1304   0.0
VFO833 (VFO833Q) /CSM/VF/VFO8-B/VFO833Q.Seq.d/                       1296   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ346802) Dictyostelium discoideum cDNA clone:dda25i01, 3' ...  1451   0.0    1
(BJ431381) Dictyostelium discoideum cDNA clone:ddv14a04, 3' ...  1435   0.0    1
(BJ430580) Dictyostelium discoideum cDNA clone:ddv7d23, 3' e...  1435   0.0    1
(AC116551) Dictyostelium discoideum chromosome 2 map complem...  1398   0.0    2
(BJ428604) Dictyostelium discoideum cDNA clone:ddv12g15, 3' ...  1356   0.0    1
(BJ432741) Dictyostelium discoideum cDNA clone:ddv19k14, 3' ...  1302   0.0    2
(BJ434028) Dictyostelium discoideum cDNA clone:ddv23n14, 3' ...  1294   0.0    1
(BJ430786) Dictyostelium discoideum cDNA clone:ddv8b21, 3' e...  1265   0.0    2
(BJ340602) Dictyostelium discoideum cDNA clone:dda2p20, 3' e...  1263   0.0    2
(BJ428295) Dictyostelium discoideum cDNA clone:ddv11m10, 3' ...  1257   0.0    1
dna update 2009. 4. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116551_43(AC116551|pid:none) Dictyostelium discoideum chromoso...   491   e-138
AM746676_5484(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...   171   2e-41
CP000512_375(CP000512|pid:none) Acidovorax avenae subsp. citrull...    52   2e-05
BC012312_1(BC012312|pid:none) Mus musculus kelch domain containi...    50   7e-05
BC058359_1(BC058359|pid:none) Mus musculus kelch domain containi...    50   7e-05
(Q921I2) RecName: Full=Kelch domain-containing protein 4;  &BC02...    50   7e-05
AM270395_4(AM270395|pid:none) Aspergillus niger contig An18c0020...    49   1e-04
BC062489_1(BC062489|pid:none) Xenopus tropicalis kelch domain co...    49   2e-04
AB055250_1(AB055250|pid:none) Macaca fascicularis brain cDNA, cl...    49   2e-04
BC073038_1(BC073038|pid:none) Xenopus laevis MGC82652 protein, m...    48   3e-04
protein update 2009. 4. 4
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM105 is

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFM105Z
3' end seq. 
>AFM105Z.Seq
XXXXXXXXXXATCAATATAGTTTATAACTCAACCCAACGTTATGATGTTAGAAAAAACGT
TTGGACAGAACTCAATCAAACTTCATTCCAACAAAACCTTGCCAATCGTTCAGTTGAAGC
CGAAACCGTCTCCAAAACAGGTAAATCTTATGCTTTCAGTGGTTCAACTTCAACCTTACC
AGCCTTCATTCGTGTTCCAGGTGCCCTTAAAACTGATACCATTGTTTTTGATTCTGTCAA
TGGATGGCAACAAGTCGTTGTAGTAGGTGCATCACCAACCCCAAGAGCTCATCATCATTT
ACACTATAATGAAGAATTAGATTCAATTTTCACCTATGGCGGCTATACCAATTGTAGTAC
CTACACCACCAATGAATGTAATTATCTTGGCGATTTATGGAGTCTTGATTTATCAACAAA
AGTTTGGAAGCAACATCTCTTTGATGTAACCAAAGGACCAGGAAATAGAGATAATGCCAA
ATTCATTTATTCCGATCAAAATCAACTTTTCTTAATTGGTGGAAGTAATTATCAATACAC
CAACTTTATGGATGTATGGCGTTTTGATTTAATTACAAATGAATGGACTCAATTAACCAT
TTTACCATTAGTTGATCCAGAAACTTATATTCAAACTCCAATTCCAAGTACAATCGGTAG
CTTCTATTTCAAACATATCAGAAAATGTAGTGTAGAATTTTACTTTAGCAGAGGTTCACT
CAGGAAATTTCAGGAAGTCCAT
Length of 3' end seq. 742
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -