AFM104
Library AF
(Link to library)
Clone ID AFM104
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM104P
(Link to Original site)
Representative DNA sequence
>AFM104 (AFM104Q) /CSM/AF/AFM1-A/AFM104Q.Seq.d/
TTCAGCAACAACAAAAAATATTACAACAACAACAACAACAACAACTATTATTACAACAAC
AAATCCAACAACAACAACAACAACAATTACATCAACCACAATCACCACAACTACCACAAT
CACCACAACAATCACCACAACAATCACCACAACAATTACAACCCCAACAATCACCACAAC
AACCACAACAACAACCACAACAACAACCACAACAACTACAACAAACACAACAAAAAACTG
TTCAAAGACCACCAATTATTCAACCAACTACTATTCAACCACAATCACCACAACCACCAC
AACAACCACAACAAAAACAACCAACAATAAATTCATCAATAACACCAATTCAACCAATTC
AACAAATGATTCAACAATTGACACAAAATAGTTCAACAAAGAGTACTTCAAAGGCTAGTA
ATATTCCAGCAACCACAGCTGCTTGTCCAAAGGTTGATTTATTACCAAATAAATCACCCA
TTTCATCATATATTTTACCACATGATTTTGAAGAGACATTGGCTCATCTAAGTGAGAXXX
XXXXXXXAATGGGNNNNNNCTTNTNNNNNGNAGNNNATATTNNTCNTGNNCNANANANTN
GTGTTANCNNTCAGNCAANAAAGTAATNTTAGACATANAAAGATTATCAAAGNAAGNACT
CATCTCNNCAGAGAGATCAGAGAATACTNCCATAGTAAAGTATTCAATGGTACCGTTAAT
AATGGTGGTAATACCAAATCAAAGANAACCGCAGCCTCTACTTCAACCACCACAACTACC
ACCTCTACTTCTACCACCACTACCACTACCACCACCATCAGTACCGATGTCGATATCTCA
AATAATATCAGTAGTCCAGTTCAATCACATCTTGTACAACTTAGTGGTTTATTAGATAAA
TTAAAAGAAAATATTGACCATGAAAATGAAACTCTCATTCAAACTTATGAAAAACTTGGT
TTCATTTTATCTCCTTTCCAAGAAGCTTTATTCATCACTAAAATCTATAATAACATTTTC
TCTGAATCTTCTTATTCAAATATTCAAATGTTACATGGTATCAAAGATGCAATTCTTTAT
TCTTATGTNATCCAACTTATACTTAAATTTTAATTT
sequence update 2009. 4. 3
Translated Amino Acid sequence
QQQQKILQQQQQQQLLLQQQIQQQQQQQLHQPQSPQLPQSPQQSPQQSPQQLQPQQSPQQ
PQQQPQQQPQQLQQTQQKTVQRPPIIQPTTIQPQSPQPPQQPQQKQPTINSSITPIQPIQ
QMIQQLTQNSSTKSTSKASNIPATTAACPKVDLLPNKSPISSYILPHDFEETLAHLSE--
-

---WXXXXXXXXIXXXXXXXVLXXXQXSNXRHXKIIKXXTHLXREIREYXHSKVFNGTVN
NGGNTKSKXTAASTSTTTTTTSTSTTTTTTTTISTDVDISNNISSPVQSHLVQLSGLLDK
LKENIDHENETLIQTYEKLGFILSPFQEALFITKIYNNIFSESSYSNIQMLHGIKDAILY
SYVIQLILKF*f


Translated Amino Acid sequence (All Frames)
Frame A:
fsnnkkyynnnnnnnyyynnksnnnnnnnyinhnhhnyhnhhnnhhnnhhnnynpnnhhn
nhnnnhnnnhnnynkhnkklfkdhqlfnqllfnhnhhnhhnnhnknnqq*ihq*hqfnqf
nk*fnn*hkivqqrvlqrlvifqqpqllvqrliyyqinhpfhhifyhmilkrhwli*vr-
--

---ngxxlxxxxxyxsxxxxxcxxsxxkvxldixrlskxxlisxersentxivkysmvpl
imvvipnqrxpqpllqppqlpplllpplplpppsvpmsisqiisvvqfnhilynlvvy*i
n*kkiltmkmklsfklmknlvsfyllskklysslksiitfslnlliqifkcymvskmqff
ilmxsnlylnfn

Frame B:
sattknittttttttiitttnpttttttitsttitttttitttitttitttittptittt
ttttttttttttttnttkncskttnystnyysttitttttttttkttnnkfinntnstns
tndstidtk*fnkeyfkg**yssnhsclskg*fitk*ithfiiyftt*f*rdigssk*--
-

---mgxxxxxxxxixxxxxxxvxxqxxk*x*txkdyqxkxssxqrdqrilp**siqwyr*
*ww*yqikxnrslyfnhhnyhlyfyhhyhyhhhqyrcrylk*yq*sssitsctt*wfir*
ikrky*p*k*nshsnl*ktwfhfisfprsfihh*nl**hfl*iflfkysnvtwyqrcnsl
flcxptyt*ili

Frame C:
QQQQKILQQQQQQQLLLQQQIQQQQQQQLHQPQSPQLPQSPQQSPQQSPQQLQPQQSPQQ
PQQQPQQQPQQLQQTQQKTVQRPPIIQPTTIQPQSPQPPQQPQQKQPTINSSITPIQPIQ
QMIQQLTQNSSTKSTSKASNIPATTAACPKVDLLPNKSPISSYILPHDFEETLAHLSE--
-

---WXXXXXXXXIXXXXXXXVLXXXQXSNXRHXKIIKXXTHLXREIREYXHSKVFNGTVN
NGGNTKSKXTAASTSTTTTTTSTSTTTTTTTTISTDVDISNNISSPVQSHLVQLSGLLDK
LKENIDHENETLIQTYEKLGFILSPFQEALFITKIYNNIFSESSYSNIQMLHGIKDAILY
SYVIQLILKF*f

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFM104 (AFM104Q) /CSM/AF/AFM1-A/AFM104Q.Seq.d/ 587 e-166
AFE157 (AFE157Q) /CSM/AF/AFE1-C/AFE157Q.Seq.d/ 587 e-166
SLI256 (SLI256Q) /CSM/SL/SLI2-C/SLI256Q.Seq.d/ 573 e-162
SLB492 (SLB492Q) /CSM/SL/SLB4-D/SLB492Q.Seq.d/ 573 e-162
CFF348 (CFF348Q) /CSM/CF/CFF3-B/CFF348Q.Seq.d/ 573 e-162
CHR244 (CHR244Q) /CSM/CH/CHR2-B/CHR244Q.Seq.d/ 561 e-159
SFK577 (SFK577Q) /CSM/SF/SFK5-D/SFK577Q.Seq.d/ 559 e-158
CHR177 (CHR177Q) /CSM/CH/CHR1-D/CHR177Q.Seq.d/ 549 e-155
SHD258 (SHD258Q) /CSM/SH/SHD2-C/SHD258Q.Seq.d/ 531 e-150
CHO501 (CHO501Q) /CSM/CH/CHO5-A/CHO501Q.Seq.d/ 509 e-143

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ346794) Dictyostelium discoideum cDNA clone:dda25g01, 3' ... 587 0.0 2
(BJ342092) Dictyostelium discoideum cDNA clone:dda9a15, 3' e... 587 0.0 2
(BJ385842) Dictyostelium discoideum cDNA clone:ddc56g12, 3' ... 561 0.0 2
(BJ386003) Dictyostelium discoideum cDNA clone:ddc56i19, 3' ... 537 0.0 3
(BJ401313) Dictyostelium discoideum cDNA clone:dds22i19, 3' ... 523 0.0 4
(BJ405071) Dictyostelium discoideum cDNA clone:dds30c16, 3' ... 523 0.0 2
(AU033830) Dictyostelium discoideum slug cDNA, clone SLB492. 537 0.0 3
(BJ384858) Dictyostelium discoideum cDNA clone:ddc51a01, 3' ... 509 0.0 2
(BJ356529) Dictyostelium discoideum cDNA clone:dda60i16, 3' ... 496 0.0 2
(BJ372151) Dictyostelium discoideum cDNA clone:ddc11p11, 3' ... 537 e-158 2
dna update 2009. 4. 9
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000140_3147(CP000140|pid:none) Parabacteroides distasonis ATCC... 37 1.2

protein update 2009. 4. 4
PSORT

psg: 0.00 gvh: 0.00 alm: 0.00 top: 0.00 tms: 0.00 mit: 0.00 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

100.0 %:

>> prediction for AFM104 is

5' end seq. ID AFM104F
5' end seq.
>AFM104F.Seq
TTCAGCAACAACAAAAAATATTACAACAACAACAACAACAACAACTATTATTACAACAAC
AAATCCAACAACAACAACAACAACAATTACATCAACCACAATCACCACAACTACCACAAT
CACCACAACAATCACCACAACAATCACCACAACAATTACAACCCCAACAATCACCACAAC
AACCACAACAACAACCACAACAACAACCACAACAACTACAACAAACACAACAAAAAACTG
TTCAAAGACCACCAATTATTCAACCAACTACTATTCAACCACAATCACCACAACCACCAC
AACAACCACAACAAAAACAACCAACAATAAATTCATCAATAACACCAATTCAACCAATTC
AACAAATGATTCAACAATTGACACAAAATAGTTCAACAAAGAGTACTTCAAAGGCTAGTA
ATATTCCAGCAACCACAGCTGCTTGTCCAAAGGTTGATTTATTACCAAATAAATCACCCA
TTTCATCATATATTTTACCACATGATTTTGAAGAGACATTGGCTCATCTAAGTGAGAXXX
XXXXXXX
Length of 5' end seq. 547
3' end seq. ID AFM104Z
3' end seq.
>AFM104Z.Seq
XXXXXXXXXXAATGGGNNNNNNCTTNTNNNNNGNAGNNNATATTNNTCNTGNNCNANANA
NTNGTGTTANCNNTCAGNCAANAAAGTAATNTTAGACATANAAAGATTATCAAAGNAAGN
ACTCATCTCNNCAGAGAGATCAGAGAATACTNCCATAGTAAAGTATTCAATGGTACCGTT
AATAATGGTGGTAATACCAAATCAAAGANAACCGCAGCCTCTACTTCAACCACCACAACT
ACCACCTCTACTTCTACCACCACTACCACTACCACCACCATCAGTACCGATGTCGATATC
TCAAATAATATCAGTAGTCCAGTTCAATCACATCTTGTACAACTTAGTGGTTTATTAGAT
AAATTAAAAGAAAATATTGACCATGAAAATGAAACTCTCATTCAAACTTATGAAAAACTT
GGTTTCATTTTATCTCCTTTCCAAGAAGCTTTATTCATCACTAAAATCTATAATAACATT
TTCTCTGAATCTTCTTATTCAAATATTCAAATGTTACATGGTATCAAAGATGCAATTCTT
TATTCTTATGTNATCCAACTTATACTTAAATTTTAATTT
Length of 3' end seq. 579
Connected seq. ID AFM104P
Connected seq.
>AFM104P.Seq
TTCAGCAACAACAAAAAATATTACAACAACAACAACAACAACAACTATTATTACAACAAC
AAATCCAACAACAACAACAACAACAATTACATCAACCACAATCACCACAACTACCACAAT
CACCACAACAATCACCACAACAATCACCACAACAATTACAACCCCAACAATCACCACAAC
AACCACAACAACAACCACAACAACAACCACAACAACTACAACAAACACAACAAAAAACTG
TTCAAAGACCACCAATTATTCAACCAACTACTATTCAACCACAATCACCACAACCACCAC
AACAACCACAACAAAAACAACCAACAATAAATTCATCAATAACACCAATTCAACCAATTC
AACAAATGATTCAACAATTGACACAAAATAGTTCAACAAAGAGTACTTCAAAGGCTAGTA
ATATTCCAGCAACCACAGCTGCTTGTCCAAAGGTTGATTTATTACCAAATAAATCACCCA
TTTCATCATATATTTTACCACATGATTTTGAAGAGACATTGGCTCATCTAAGTGAGA---
-------AATGGGNNNNNNCTTNTNNNNNGNAGNNNATATTNNTCNTGNNCNANANANTN
GTGTTANCNNTCAGNCAANAAAGTAATNTTAGACATANAAAGATTATCAAAGNAAGNACT
CATCTCNNCAGAGAGATCAGAGAATACTNCCATAGTAAAGTATTCAATGGTACCGTTAAT
AATGGTGGTAATACCAAATCAAAGANAACCGCAGCCTCTACTTCAACCACCACAACTACC
ACCTCTACTTCTACCACCACTACCACTACCACCACCATCAGTACCGATGTCGATATCTCA
AATAATATCAGTAGTCCAGTTCAATCACATCTTGTACAACTTAGTGGTTTATTAGATAAA
TTAAAAGAAAATATTGACCATGAAAATGAAACTCTCATTCAAACTTATGAAAAACTTGGT
TTCATTTTATCTCCTTTCCAAGAAGCTTTATTCATCACTAAAATCTATAATAACATTTTC
TCTGAATCTTCTTATTCAAATATTCAAATGTTACATGGTATCAAAGATGCAATTCTTTAT
TCTTATGTNATCCAACTTATACTTAAATTTTAATTT
Length of connected seq. 1106
Full length Seq ID -
Full length Seq. -
Length of full length seq. -