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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM103
Library AF
(Link to library)
Clone ID AFM103
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM103P
(Link to Original site)
Representative DNA sequence 
>AFM103 (AFM103Q) /CSM/AF/AFM1-A/AFM103Q.Seq.d/
AATATTTTAGTTTTAGGTAGTACTGGTGTTGGTAAAAGTACATTTATTTCATCATTGGTA
AACTATTTGAAATATGAATCATTGGAACAAGCTATGAATCTTGCCAGTTTGGATAXXXXX
XXXXXGGCATCACACATTTGGTATCTTGGGTGGTTGTAAAGAATGTGGTTGTTCTTATAA
AGATCATTCAGTGTCTGATATCGTTCATGTTAAAGAAGCAATTCAAGTCATTGATGAAGG
TATCAAAGGTAAAATCCTTTCCAAAGAAGAACTCACTGCTGTCGCCAATAGAAGAGTTAA
AGAGAATTTAGAACTCAAAGAGAAATATTCCCAAGAATTTGAGGTTTTATCAAATGCATT
TGCCAAATTTGCAATCTTTGTAGCTCATAATTCATTGGTTGCTGTTAATCACGACTATGC
AGAATACCTCCAATTGGAAATTAAAAACCTTAAAGAAAGCCCAAATGTTAAAGATAGAGA
GAAACAATTAGAAAAATTAAATGAAATCCTTAAATCTCATCAAATTGAACTTGATACTTT
TGAAGCCGCCCGTTCAAAAGAAAAAGAAGGTCTTTCACCACACGATATAAATCTCCTTGG
TGAAGAAGTTTTATCACTTGAAATCTCTGGTAGAATCATTAAAGATATTCAAAGTCATAA
TGAAAAACAAAAATATGCTTCATCAAAAAAAGTTAAAAATGTTAAAATTACATTAAATAA
ACAAGTGAAAGTGCTATTAAAGGTTATTAAATTAATTAAAATAAATTAAATAAAAAAAAT
T
sequence update 2009. 4. 3
Translated Amino Acid sequence 
NILVLGSTGVGKSTFISSLVNYLKYESLEQAMNLASLD---

---HHTFGILGGCKECGCSYKDHSVSDIVHVKEAIQVIDEGIKGKILSKEELTAVANRRV
KENLELKEKYSQEFEVLSNAFAKFAIFVAHNSLVAVNHDYAEYLQLEIKNLKESPNVKDR
EKQLEKLNEILKSHQIELDTFEAARSKEKEGLSPHDINLLGEEVLSLEISGRIIKDIQSH
NEKQKYASSKKVKNVKITLNKQVKVLLKVIKLIKIN*ikki
Translated Amino Acid sequence (All Frames) 
Frame A:
NILVLGSTGVGKSTFISSLVNYLKYESLEQAMNLASLD---

---githlvswvvvknvvvlikiiqclisfmlkkqfkslmkvskvksfpkknsllspiee
lkri*nskrnipknlrfyqmhlpnlqsl*liihwlllittmqntsnwklktlkkaqmlki
ernn*kn*mkslnliklnlillkppvqkkkkvfhhti*islvkkfyhlkslveslkifkv
imknknmlhqkklkmlklh*ink*kcy*rlln*lk*ik*kk

Frame B:
if*f*vvlvlvkvhlfhhw*ti*nmnhwnkl*ilpvwi---

---ashiwylgwl*rmwlfl*rsfsv*yrsc*rsnssh**ryqr*npfqrrthccrq*ks
*refrtqreifpri*gfikcicqicnlcss*figcc*srlcrippign*kp*rkpkc*r*
retirkik*np*issn*t*yf*srpfkrkrrsfttrykspw*rsfit*nlw*nh*rysks
**ktkicfikks*kc*nyik*tsesaikgy*in*nklnkkn

Frame C:
yfsfr*ywcw*kyiyfiigklfei*iigtsyescqfg---

---HHTFGILGGCKECGCSYKDHSVSDIVHVKEAIQVIDEGIKGKILSKEELTAVANRRV
KENLELKEKYSQEFEVLSNAFAKFAIFVAHNSLVAVNHDYAEYLQLEIKNLKESPNVKDR
EKQLEKLNEILKSHQIELDTFEAARSKEKEGLSPHDINLLGEEVLSLEISGRIIKDIQSH
NEKQKYASSKKVKNVKITLNKQVKVLLKVIKLIKIN*ikki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM103 (AFM103Q) /CSM/AF/AFM1-A/AFM103Q.Seq.d/                       1253   0.0
VHC723 (VHC723Q) /CSM/VH/VHC7-A/VHC723Q.Seq.d/                       1065   0.0
SFK866 (SFK866Q) /CSM/SF/SFK8-C/SFK866Q.Seq.d/                       1065   0.0
SFH491 (SFH491Q) /CSM/SF/SFH4-D/SFH491Q.Seq.d/                       1065   0.0
SFG571 (SFG571Q) /CSM/SF/SFG5-C/SFG571Q.Seq.d/                       1065   0.0
SFF558 (SFF558Q) /CSM/SF/SFF5-C/SFF558Q.Seq.d/                       1065   0.0
CHD529 (CHD529Q) /CSM/CH/CHD5-B/CHD529Q.Seq.d/                       1065   0.0
CFC195 (CFC195Q) /CSM/CF/CFC1-D/CFC195Q.Seq.d/                       1065   0.0
AHO519 (AHO519Q) /CSM/AH/AHO5-A/AHO519Q.Seq.d/                       1065   0.0
AHM701 (AHM701Q) /CSM/AH/AHM7-A/AHM701Q.Seq.d/                       1065   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AB120174) Dictyostelium discoideum DD8-14 mRNA for hypothet...   615   0.0    3
(BJ341269) Dictyostelium discoideum cDNA clone:dda5o20, 3' e...   615   0.0    2
(BJ355355) Dictyostelium discoideum cDNA clone:dda56e13, 3' ...   615   0.0    2
(BJ355180) Dictyostelium discoideum cDNA clone:dda56b01, 3' ...   615   0.0    2
(BJ342559) Dictyostelium discoideum cDNA clone:dda14i13, 3' ...   615   0.0    2
(BJ346787) Dictyostelium discoideum cDNA clone:dda25e01, 3' ...   615   0.0    2
(BJ342477) Dictyostelium discoideum cDNA clone:dda14o01, 3' ...   615   0.0    2
(BJ341588) Dictyostelium discoideum cDNA clone:dda7f12, 3' e...   615   0.0    2
(BJ376638) Dictyostelium discoideum cDNA clone:ddc29i07, 3' ...   615   0.0    2
(BJ344197) Dictyostelium discoideum cDNA clone:dda18a23, 3' ...   615   0.0    2
dna update 2009. 4. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB120174_1(AB120174|pid:none) Dictyostelium discoideum DD8-14 mR...   384   e-105
AC114263_3(AC114263|pid:none) Dictyostelium discoideum chromosom...    77   8e-13
AE014186_259(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    43   0.012
CR954211_349(CR954211|pid:none) Ostreococcus tauri strain OTTH05...    42   0.021
EU159419_1(EU159419|pid:none) Triticum turgidum haplotype A DNA ...    42   0.028
AF093542_1(AF093542|pid:none) Mus musculus transforming acidic c...    42   0.028
EU159424_1(EU159424|pid:none) Triticum turgidum haplotype B DNA ...    42   0.028
AK145556_1(AK145556|pid:none) Mus musculus blastocyst blastocyst...    42   0.028
(Q9JJ11) RecName: Full=Transforming acidic coiled-coil-containin...    42   0.028
EU159420_1(EU159420|pid:none) Triticum turgidum haplotype B DNA ...    42   0.028
protein update 2009. 4. 4
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM103 is

5' end seq. ID AFM103F
5' end seq. 
>AFM103F.Seq
AATATTTTAGTTTTAGGTAGTACTGGTGTTGGTAAAAGTACATTTATTTCATCATTGGTA
AACTATTTGAAATATGAATCATTGGAACAAGCTATGAATCTTGCCAGTTTGGATAXXXXX
XXXXX
Length of 5' end seq. 125
3' end seq. ID AFM103Z
3' end seq. 
>AFM103Z.Seq
XXXXXXXXXXGGCATCACACATTTGGTATCTTGGGTGGTTGTAAAGAATGTGGTTGTTCT
TATAAAGATCATTCAGTGTCTGATATCGTTCATGTTAAAGAAGCAATTCAAGTCATTGAT
GAAGGTATCAAAGGTAAAATCCTTTCCAAAGAAGAACTCACTGCTGTCGCCAATAGAAGA
GTTAAAGAGAATTTAGAACTCAAAGAGAAATATTCCCAAGAATTTGAGGTTTTATCAAAT
GCATTTGCCAAATTTGCAATCTTTGTAGCTCATAATTCATTGGTTGCTGTTAATCACGAC
TATGCAGAATACCTCCAATTGGAAATTAAAAACCTTAAAGAAAGCCCAAATGTTAAAGAT
AGAGAGAAACAATTAGAAAAATTAAATGAAATCCTTAAATCTCATCAAATTGAACTTGAT
ACTTTTGAAGCCGCCCGTTCAAAAGAAAAAGAAGGTCTTTCACCACACGATATAAATCTC
CTTGGTGAAGAAGTTTTATCACTTGAAATCTCTGGTAGAATCATTAAAGATATTCAAAGT
CATAATGAAAAACAAAAATATGCTTCATCAAAAAAAGTTAAAAATGTTAAAATTACATTA
AATAAACAAGTGAAAGTGCTATTAAAGGTTATTAAATTAATTAAAATAAATTAAATAAAA
AAAATT
Length of 3' end seq. 666
Connected seq. ID AFM103P
Connected seq. 
>AFM103P.Seq
AATATTTTAGTTTTAGGTAGTACTGGTGTTGGTAAAAGTACATTTATTTCATCATTGGTA
AACTATTTGAAATATGAATCATTGGAACAAGCTATGAATCTTGCCAGTTTGGATA-----
-----GGCATCACACATTTGGTATCTTGGGTGGTTGTAAAGAATGTGGTTGTTCTTATAA
AGATCATTCAGTGTCTGATATCGTTCATGTTAAAGAAGCAATTCAAGTCATTGATGAAGG
TATCAAAGGTAAAATCCTTTCCAAAGAAGAACTCACTGCTGTCGCCAATAGAAGAGTTAA
AGAGAATTTAGAACTCAAAGAGAAATATTCCCAAGAATTTGAGGTTTTATCAAATGCATT
TGCCAAATTTGCAATCTTTGTAGCTCATAATTCATTGGTTGCTGTTAATCACGACTATGC
AGAATACCTCCAATTGGAAATTAAAAACCTTAAAGAAAGCCCAAATGTTAAAGATAGAGA
GAAACAATTAGAAAAATTAAATGAAATCCTTAAATCTCATCAAATTGAACTTGATACTTT
TGAAGCCGCCCGTTCAAAAGAAAAAGAAGGTCTTTCACCACACGATATAAATCTCCTTGG
TGAAGAAGTTTTATCACTTGAAATCTCTGGTAGAATCATTAAAGATATTCAAAGTCATAA
TGAAAAACAAAAATATGCTTCATCAAAAAAAGTTAAAAATGTTAAAATTACATTAAATAA
ACAAGTGAAAGTGCTATTAAAGGTTATTAAATTAATTAAAATAAATTAAATAAAAAAAAT
T
Length of connected seq. 771
Full length Seq ID -
Full length Seq. -
Length of full length seq. -