VFA445
Library VF
(Link to library)
Clone ID VFA445
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16090-1
Original site URL
Representative seq. ID VFA445P
(Link to Original site)
Representative DNA sequence
>VFA445 (VFA445Q) /CSM/VF/VFA4-B/VFA445Q.Seq.d/
ACACAGAGATAAACAATGTCATCTAACTACAGTAAGACCTCTCACACTCCACGTCGTCCA
TTCGAAAAGGAAAGAATCGACGCTGAATTAAAAGTTGTCGGTGAATTTGGTTTAAAGAAC
AAAAACGAAGTATGGAGAGTCCAATACGCTTTAGCCAAAATCAGAAAGGCTGCTAGAGAA
CTCCTCGTTCTTGATGAAAAAGACCCAAAACGTATCTTTGAAGGTTCAGCTCTCCTCCGT
AGACTCCACAAATTAGGTGTCATGGAAGAATCAAAGAACAAACTCGATTATATTCTTAAT
CTTAAAGTTCAAGATTTCATGGAAAGACGTCTCCAAACTTTAGTCTTCAAAAATGGTCTT
GCCAAATCAATCCATCACGCTCGTGTTTTAATCAAAGGTAGACACATCCGTGTTGGTAAA
CAATTAGTCAACGTTCCATCTTTCCTCGTCCGTGTTGAATCCCAAAAGCACTTAGGTTTA
GCTTCAACCTCCCCATTAGCTGGTGGTCGTNCAGGTCGTCGTGCCCGTAAAATGGCCAAG
AACAACTCATCAAAAGGTGAAGAAGAAAACTAAATTAATAAXXXXXXXXXXACACAGAGA
TAAACAATGTCATCTAACTACAGTAAGACCTCTCACACTCCACGTCGTCCATTCGAAAAG
GAAAGAATCGACGCTGAATTAAAAGTTGTCGGTGAATTTGGTTTAAAGAACAAAAACGAA
GTATGGAGAGTCCAATACGCTTTAGCCAAAATCAGAAAGGCTGCTAGAGAACTCCTCGTT
CTTGATGAAAAAGACCCAAAACGTATCTTTGAAGGTTCAGCTCTCCTCCGTAGACTCCAC
AAATTAGGTGTCATGGAAGAATCAAAGAACAAACTCGATTATATTCTTAATCTTAAAGTT
CAAGATTTCATGGAAAGACGTCTCCAAACTTTAGTCTTCAAAAATGGTCTTGCCAAATCA
ATCCATCACGCTCGTGTTTTAATCAAAGGTAGACACATCCGTGTTGGTAAACAATTAGTC
AACGTTCCATCTTTCCTCGTCCGTGTTGAATCCCAAAAGCACTTAGGTTTAGCTTCAACC
TCCCCATTAGCTGGTGGTCGTCCAGGTCGTCGTGCCCGTAAAATGGCCAAGAACAACTCA
TCAAAAGGNAAGAAGAAAACTA
sequence update 2001. 6. 1
Translated Amino Acid sequence
hrdkqchlttvrpltlhvvhskrkestln*klsvnlv*rtktkygesntl*pkserllen
ssflmkktqnvslkvqlssvdstn*vswknqrtnsiiflilkfkiswkdvskl*sskmvl
pnqsitlvf*skvdtsvlvnn*stfhlsssvlnpkst*v*lqpph*LVVVQVVVPVKWPR
TTHQKVKKKTKLI---

---HRDKQCHLTTVRPLTLHVVHSKRKESTLN*klsvnlv*rtktkygesntl*pkserl
lenssflmkktqnvslkvqlssvdstn*vswknqrtnsiiflilkfkiswkdvskl*ssk
mvlpnqsitlvf*skvdtsvlvnn*stfhlsssvlnpkst*v*lqpph*lvvvqvvvpvk
wprtthqkxrrkl


Translated Amino Acid sequence (All Frames)
Frame A:
tqr*tmssnysktshtprrpfekeridaelkvvgefglknknevwrvqyalakirkaare
llvldekdpkrifegsallrrlhklgvmeesknkldyilnlkvqdfmerrlqtlvfkngl
aksihharvlikgrhirvgkqlvnvpsflvrvesqkhlglastsplaggrxgrrarkmak
nnsskgeeen*in---

---tqr*tmssnysktshtprrpfekeridaelkvvgefglknknevwrvqyalakirka
arellvldekdpkrifegsallrrlhklgvmeesknkldyilnlkvqdfmerrlqtlvfk
nglaksihharvlikgrhirvgkqlvnvpsflvrvesqkhlglastsplaggrpgrrark
maknnsskgkkkt

Frame B:
hrdkqchlttvrpltlhvvhskrkestln*klsvnlv*rtktkygesntl*pkserllen
ssflmkktqnvslkvqlssvdstn*vswknqrtnsiiflilkfkiswkdvskl*sskmvl
pnqsitlvf*skvdtsvlvnn*stfhlsssvlnpkst*v*lqpph*LVVVQVVVPVKWPR
TTHQKVKKKTKLI---

---HRDKQCHLTTVRPLTLHVVHSKRKESTLN*klsvnlv*rtktkygesntl*pkserl
lenssflmkktqnvslkvqlssvdstn*vswknqrtnsiiflilkfkiswkdvskl*ssk
mvlpnqsitlvf*skvdtsvlvnn*stfhlsssvlnpkst*v*lqpph*lvvvqvvvpvk
wprtthqkxrrkl

Frame C:
teinnvi*lq*dlshstssirkgknrr*ikscr*iwfkeqkrsmespirfsqnqkgc*rt
prs**krpktyl*rfsspp*tpqirchgrikeqtrlys*s*ssrfhgktspnfslqkwsc
qinpsrscfnqr*thpcw*tisqrsifprpc*ipkalrfsfnlpiswwsxrsscp*ngqe
qlikr*rrkln**---

---teinnvi*lq*dlshstssirkgknrr*ikscr*iwfkeqkrsmespirfsqnqkgc
*rtprs**krpktyl*rfsspp*tpqirchgrikeqtrlys*s*ssrfhgktspnfslqk
wscqinpsrscfnqr*thpcw*tisqrsifprpc*ipkalrfsfnlpiswwssrsscp*n
gqeqlikrxeen

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFA445 (VFA445Q) /CSM/VF/VFA4-B/VFA445Q.Seq.d/ 2232 0.0
VHJ170 (VHJ170Q) /CSM/VH/VHJ1-C/VHJ170Q.Seq.d/ 1146 0.0
VHO354 (VHO354Q) /CSM/VH/VHO3-C/VHO354Q.Seq.d/ 1132 0.0
VSH713 (VSH713Q) /CSM/VS/VSH7-A/VSH713Q.Seq.d/ 1130 0.0
VSF164 (VSF164Q) /CSM/VS/VSF1-C/VSF164Q.Seq.d/ 1118 0.0
FC-AS15 (FC-AS15Q) /CSM/FC/FC-AS/FC-AS15Q.Seq.d/ 1108 0.0
VSD823 (VSD823Q) /CSM/VS/VSD8-A/VSD823Q.Seq.d/ 1096 0.0
VSD109 (VSD109Q) /CSM/VS/VSD1-A/VSD109Q.Seq.d/ 1092 0.0
FC-BO11 (FC-BO11Q) /CSM/FC/FC-BO/FC-BO11Q.Seq.d/ 1080 0.0
VSH205 (VSH205Q) /CSM/VS/VSH2-A/VSH205Q.Seq.d/ 1078 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X06636|X06636.1 Dictyostelium rp1024 gene for ribosomal protein 1024. 1092 0.0 3
X15384|X15384.1 Dictyostelium discoideum mRNA for V12 gene. 737 0.0 2
AL111255|AL111255.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 72 2e-14 3
AL116249|AL116249.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 72 2e-14 3
AL116178|AL116178.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 72 2e-14 3
AL115920|AL115920.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 72 2e-14 3
AL115016|AL115016.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 72 2e-14 3
AL115391|AL115391.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 72 2e-14 3
AL115396|AL115396.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 72 2e-14 3
AL112836|AL112836.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 72 2e-14 3
dna update 2003. 8.16
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P14132) RecName: Full=40S ribosomal protein S9; AltName: Full=4... 339 1e-91
AY857466_1(AY857466|pid:none) Suberites domuncula S9 mRNA, compl... 242 2e-62
AP007167_255(AP007167|pid:none) Aspergillus oryzae RIB40 genomic... 238 3e-61
AY961563_1(AY961563|pid:none) Lysiphlebus testaceipes ribosomal ... 238 4e-61
AM270039_25(AM270039|pid:none) Aspergillus niger contig An02c045... 237 5e-61
BT070286_1(BT070286|pid:none) Picea sitchensis clone WS02717_F01... 236 1e-60
(Q9LXG1) RecName: Full=40S ribosomal protein S9-1; &AK228437_1(... 235 2e-60
EU958237_1(EU958237|pid:none) Zea mays clone 1680160 40S ribosom... 235 2e-60
CU633445_35(CU633445|pid:none) Podospora anserina genomic DNA ch... 234 3e-60
AJ749993_1(AJ749993|pid:none) Catharanthus roseus mRNA for 40S r... 234 4e-60
protein update 2009. 6.16
PSORT

psg: 0.50 gvh: 0.44 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.37 mip: 0.00
nuc: 0.12 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: nuclear
16.0 %: mitochondrial
16.0 %: cytoplasmic
8.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for VFA445 is nuc

5' end seq. ID VFA445F
5' end seq.
>VFA445F.Seq
ACACAGAGATAAACAATGTCATCTAACTACAGTAAGACCTCTCACACTCCACGTCGTCCA
TTCGAAAAGGAAAGAATCGACGCTGAATTAAAAGTTGTCGGTGAATTTGGTTTAAAGAAC
AAAAACGAAGTATGGAGAGTCCAATACGCTTTAGCCAAAATCAGAAAGGCTGCTAGAGAA
CTCCTCGTTCTTGATGAAAAAGACCCAAAACGTATCTTTGAAGGTTCAGCTCTCCTCCGT
AGACTCCACAAATTAGGTGTCATGGAAGAATCAAAGAACAAACTCGATTATATTCTTAAT
CTTAAAGTTCAAGATTTCATGGAAAGACGTCTCCAAACTTTAGTCTTCAAAAATGGTCTT
GCCAAATCAATCCATCACGCTCGTGTTTTAATCAAAGGTAGACACATCCGTGTTGGTAAA
CAATTAGTCAACGTTCCATCTTTCCTCGTCCGTGTTGAATCCCAAAAGCACTTAGGTTTA
GCTTCAACCTCCCCATTAGCTGGTGGTCGTNCAGGTCGTCGTGCCCGTAAAATGGCCAAG
AACAACTCATCAAAAGGTGAAGAAGAAAACTAAATTAATAA----------
Length of 5' end seq. 581
3' end seq. ID VFA445Z
3' end seq.
>VFA445Z.Seq
----------ACACAGAGATAAACAATGTCATCTAACTACAGTAAGACCTCTCACACTCC
ACGTCGTCCATTCGAAAAGGAAAGAATCGACGCTGAATTAAAAGTTGTCGGTGAATTTGG
TTTAAAGAACAAAAACGAAGTATGGAGAGTCCAATACGCTTTAGCCAAAATCAGAAAGGC
TGCTAGAGAACTCCTCGTTCTTGATGAAAAAGACCCAAAACGTATCTTTGAAGGTTCAGC
TCTCCTCCGTAGACTCCACAAATTAGGTGTCATGGAAGAATCAAAGAACAAACTCGATTA
TATTCTTAATCTTAAAGTTCAAGATTTCATGGAAAGACGTCTCCAAACTTTAGTCTTCAA
AAATGGTCTTGCCAAATCAATCCATCACGCTCGTGTTTTAATCAAAGGTAGACACATCCG
TGTTGGTAAACAATTAGTCAACGTTCCATCTTTCCTCGTCCGTGTTGAATCCCAAAAGCA
CTTAGGTTTAGCTTCAACCTCCCCATTAGCTGGTGGTCGTCCAGGTCGTCGTGCCCGTAA
AATGGCCAAGAACAACTCATCAAAAGGNAAGAAGAAAACTA
Length of 3' end seq. 571
Connected seq. ID VFA445P
Connected seq.
>VFA445P.Seq
ACACAGAGATAAACAATGTCATCTAACTACAGTAAGACCTCTCACACTCCACGTCGTCCA
TTCGAAAAGGAAAGAATCGACGCTGAATTAAAAGTTGTCGGTGAATTTGGTTTAAAGAAC
AAAAACGAAGTATGGAGAGTCCAATACGCTTTAGCCAAAATCAGAAAGGCTGCTAGAGAA
CTCCTCGTTCTTGATGAAAAAGACCCAAAACGTATCTTTGAAGGTTCAGCTCTCCTCCGT
AGACTCCACAAATTAGGTGTCATGGAAGAATCAAAGAACAAACTCGATTATATTCTTAAT
CTTAAAGTTCAAGATTTCATGGAAAGACGTCTCCAAACTTTAGTCTTCAAAAATGGTCTT
GCCAAATCAATCCATCACGCTCGTGTTTTAATCAAAGGTAGACACATCCGTGTTGGTAAA
CAATTAGTCAACGTTCCATCTTTCCTCGTCCGTGTTGAATCCCAAAAGCACTTAGGTTTA
GCTTCAACCTCCCCATTAGCTGGTGGTCGTNCAGGTCGTCGTGCCCGTAAAATGGCCAAG
AACAACTCATCAAAAGGTGAAGAAGAAAACTAAATTAATAA----------ACACAGAGA
TAAACAATGTCATCTAACTACAGTAAGACCTCTCACACTCCACGTCGTCCATTCGAAAAG
GAAAGAATCGACGCTGAATTAAAAGTTGTCGGTGAATTTGGTTTAAAGAACAAAAACGAA
GTATGGAGAGTCCAATACGCTTTAGCCAAAATCAGAAAGGCTGCTAGAGAACTCCTCGTT
CTTGATGAAAAAGACCCAAAACGTATCTTTGAAGGTTCAGCTCTCCTCCGTAGACTCCAC
AAATTAGGTGTCATGGAAGAATCAAAGAACAAACTCGATTATATTCTTAATCTTAAAGTT
CAAGATTTCATGGAAAGACGTCTCCAAACTTTAGTCTTCAAAAATGGTCTTGCCAAATCA
ATCCATCACGCTCGTGTTTTAATCAAAGGTAGACACATCCGTGTTGGTAAACAATTAGTC
AACGTTCCATCTTTCCTCGTCCGTGTTGAATCCCAAAAGCACTTAGGTTTAGCTTCAACC
TCCCCATTAGCTGGTGGTCGTCCAGGTCGTCGTGCCCGTAAAATGGCCAAGAACAACTCA
TCAAAAGGNAAGAAGAAAACTA
Length of connected seq. 1152
Full length Seq ID -
Full length Seq. -
Length of full length seq. -