VFA444 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VFA444
Library	VF (Link to library)
Clone ID	VFA444 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U15823-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VF/VFA4-B/VFA444Q.Seq.d/
Representative seq. ID	VFA444E (Link to Original site)
Representative DNA sequence	>VFA444 (VFA444Q) /CSM/VF/VFA4-B/VFA444Q.Seq.d/ ATAAATGGAGGCCGATCCGAGCTTAGTTTCTTATGCAGGCCAACATGGTGAATGGGAAAC TCGTGAAATTTCAATCTTTGGTGTTGTAAAAAGTTTTATTTCTCAATTATCAATTGGTCA AGAGTTGACAAAAGTTAGTATGCCATCAATTTTTTTAATGCCATATTCAATTTTAGAGTT AGCAGCATCAAGACATCTTAAATATATACACCTTTTAATTTCAGCCCAACACGAAGAAGA TCCATTAAAAAGAATGGCAATTATTATTCAATACTTTTTTTCTTGTGTTAGAGATGGAAA TTTCCAAAAAAAACCATATAATGCATTATTAGGAGAAGTTCATAAATGTTTTGTCAAATA TCCATCATATGATGGTCAATCAACATCTACTGCACAATTTATAGGTGAACAAGTTACACA TCATCCACCATTAACAGCATTCAATATTACTACTTCAGAAGGAATTACTTTAGATTGTAA TGTACAATTTTCAGCTAAATTCCATATGAACTCAGTATCAGTTGTTACAACTGGTGCAGT TAAAATTTGTATTCCAGTTAAAGTTGGTAATCAAATCATTAAAGAAACATATATCATTGA TAAAGGTTTACCAGATGCTTTGGTAAAGAATGTAATTTTTGGTACTAGATCAATTTATTG GACTGATTCTGTTGATATAATGTGTGAAGATTCAAAAACTTCTGCAACTGTTCATTTCGA TAAGAATGAATATGTTAAAGGTGAAGTTTCAGTTTATAATACAGAATTAGAAGTTGAAGA GCATAGAGCATCTTTAAAGGGATATATTAGTGATGTTGTCAATATCGATTATTTAGAATC AAAATCATCTGAAGCTGCACCAGCATCTTCTGCAAGTAAAAAAGAAAAGAAGAAAGAAAA GAAGAAAGCAAAACATTCAAAACATACATGTAGTCCATCTGATACCATTTTAATGGATAC TAAACAATTAGAACCAAATTCAACTTTATATCCAAAACAAACGATCCAATACTTCATTAG GTACTGGAAAGAAGTACAAAACAAAT
sequence update	2001. 6. 9
Translated Amino Acid sequence	*MEADPSLVSYAGQHGEWETREISIFGVVKSFISQLSIGQELTKVSMPSIFLMPYSILEL AASRHLKYIHLLISAQHEEDPLKRMAIIIQYFFSCVRDGNFQKKPYNALLGEVHKCFVKY PSYDGQSTSTAQFIGEQVTHHPPLTAFNITTSEGITLDCNVQFSAKFHMNSVSVVTTGAV KICIPVKVGNQIIKETYIIDKGLPDALVKNVIFGTRSIYWTDSVDIMCEDSKTSATVHFD KNEYVKGEVSVYNTELEVEEHRASLKGYISDVVNIDYLESKSSEAAPASSASKKEKKKEK KKAKHSKHTCSPSDTILMDTKQLEPNSTLYPKQTIQYFIRYWKEVQNK
Translated Amino Acid sequence (All Frames)	Frame A: inggrselsflcrptwmgnsnfnlwcckkfyfsiinwsrvdksyainffnaifnfrv ssiktsiytpfnfsptrrrsikkngnyysilfflcrwkfpkkticiirrssmfcqi siiwsiniyctiyrtsytsstinsiqyyyfrrnyfrlctifsipyelsiscynwcs nlyssswsnhrniyhrftrcfgkecnfwyinlldfcynvrfknfcncsfr eicrsfslyrirsrasifkgiy*ccqyrlfrikiisctsifckkrkeerk eesktfktymsiyhfngytirtkfnfisktndpilhvlerstkq Frame B: MEADPSLVSYAGQHGEWETREISIFGVVKSFISQLSIGQELTKVSMPSIFLMPYSILEL AASRHLKYIHLLISAQHEEDPLKRMAIIIQYFFSCVRDGNFQKKPYNALLGEVHKCFVKY PSYDGQSTSTAQFIGEQVTHHPPLTAFNITTSEGITLDCNVQFSAKFHMNSVSVVTTGAV KICIPVKVGNQIIKETYIIDKGLPDALVKNVIFGTRSIYWTDSVDIMCEDSKTSATVHFD KNEYVKGEVSVYNTELEVEEHRASLKGYISDVVNIDYLESKSSEAAPASSASKKEKKKEK KKAKHSKHTCSPSDTILMDTKQLEPNSTLYPKQTIQYFIRYWKEVQNK Frame C: kwrpiraflmqanmvngklvkfqslvlkvlflnyqlvksqklvchqffchiqfs qhqdilniytffqpntkkihkewqllfntfflvlemeiskknhimhyekfinvlsni hhmmvnqhllhnlvnklhiihhqhsilllqkellivmynfqlnsitqyqllqlvql kfvfqlklvikslkkhislikvyqmlwrmflvldqfiglillicvkiqkllqlfisi rmnmlkvkfqfiiqnklksiehlrdilvmlsisiinqnhlklhqhllqvkkkrrkkr rkqniqnihvvhlipfwilnn*nqiqlyiqnkrsntslgtgkkyktn
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VFA444 (VFA444Q) /CSM/VF/VFA4-B/VFA444Q.Seq.d/ 1608 0.0 VFM332 (VFM332Q) /CSM/VF/VFM3-B/VFM332Q.Seq.d/ 1584 0.0 AFI558 (AFI558Q) /CSM/AF/AFI5-C/AFI558Q.Seq.d/ 1520 0.0 VFF842 (VFF842Q) /CSM/VF/VFF8-B/VFF842Q.Seq.d/ 1063 0.0 VFC638 (VFC638Q) /CSM/VF/VFC6-B/VFC638Q.Seq.d/ 1029 0.0 SSI312 (SSI312Q) /CSM/SS/SSI3-A/SSI312Q.Seq.d/ 1025 0.0 SSM725 (SSM725Q) /CSM/SS/SSM7-B/SSM725Q.Seq.d/ 979 0.0 SLC707 (SLC707Q) /CSM/SL/SLC7-A/SLC707Q.Seq.d/ 973 0.0 SFJ888 (SFJ888Q) /CSM/SF/SFJ8-D/SFJ888Q.Seq.d/ 944 0.0 VFL579 (VFL579Q) /CSM/VF/VFL5-D/VFL579Q.Seq.d/ 934 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N BG227246\|BG227246.1 kq04c02.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to WP:F11C3.3 CE09349 UNC-54: MYOSIN HEAVY CHAIN ;, mRNA sequence. 52 0.014 1 BG227040\|BG227040.1 kp95h10.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to WP:F11C3.3 CE09349 UNC-54: MYOSIN HEAVY CHAIN ;, mRNA sequence. 52 0.014 1 Z96810\|Z96810.1 Human DNA sequence from PAC 452H17 on chromosome X contains sodium- and chloride-dependent glycine transporter 1 (GLYT-1) like, ESTs. 36 0.17 4 CD390926\|CD390926.1 Gm_ck0332 Soybean induced by Salicylic Acid Glycine max cDNA 3', mRNA sequence. 48 0.22 1 AC113542\|AC113542.4 Mus musculus clone RP23-195A18, * SEQUENCING IN PROGRESS , 5 unordered pieces. 42 0.45 3 AC140119\|AC140119.3 Homo sapiens 3 BAC RP11-747D18 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 36 1.1 3 AC140881\|AC140881.1 Homo sapiens chromosome 16 clone RP11-1346E20, WORKING DRAFT SEQUENCE, 53 unordered pieces. 36 1.2 4 AC020646\|AC020646.2 Genomic sequence for Arabidopsis thaliana BAC T32E20 from chromosome I, complete sequence. 36 1.7 3 AL356057\|AL356057.12 Human DNA sequence SEQUENCING IN PROGRESS * from clone RP11-474L11. 36 2.1 6 AC067801\|AC067801.4 Homo sapiens chromosome 18, clone RP11-583B12, complete sequence. 42 2.1 4
dna update	2003. 8.16
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q54RM1) RecName: Full=Oxysterol-binding protein 7; AltName: Ful... 601 e-170 BC161062_1(BC161062\|pid:none) Xenopus tropicalis hypothetical pr... 103 1e-20 AE014297_2885(AE014297\|pid:none) Drosophila melanogaster chromos... 102 2e-20 AE014297_2881(AE014297\|pid:none) Drosophila melanogaster chromos... 102 2e-20 Z70269_4(Z70269\|pid:none) Caenorhabditis elegans Cosmid ZK1086, ... 101 5e-20 AY051614_1(AY051614\|pid:none) Drosophila melanogaster GH25973 fu... 101 5e-20 Z70269_3(Z70269\|pid:none) Caenorhabditis elegans Cosmid ZK1086, ... 101 5e-20 T27691(T27691)hypothetical protein ZK1086.1 - Caenorhabditis ele... 101 5e-20 AB040967_1(AB040967\|pid:none) Homo sapiens mRNA for KIAA1534 pro... 97 1e-18 CR749542_1(CR749542\|pid:none) Homo sapiens mRNA; cDNA DKFZp686A1... 97 1e-18
protein update	2009. 7. 9
PSORT	psg: 0.75 gvh: 0.51 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.15 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 52.0 %: cytoplasmic 32.0 %: nuclear 8.0 %: mitochondrial 4.0 %: Golgi 4.0 %: vesicles of secretory system >> prediction for VFA444 is cyt
5' end seq. ID	VFA444F
5' end seq.	>VFA444F.Seq ATAAATGGAGGCCGATCCGAGCTTAGTTTCTTATGCAGGCCAACATGGTGAATGGGAAAC TCGTGAAATTTCAATCTTTGGTGTTGTAAAAAGTTTTATTTCTCAATTATCAATTGGTCA AGAGTTGACAAAAGTTAGTATGCCATCAATTTTTTTAATGCCATATTCAATTTTAGAGTT AGCAGCATCAAGACATCTTAAATATATACACCTTTTAATTTCAGCCCAACACGAAGAAGA TCCATTAAAAAGAATGGCAATTATTATTCAATACTTTTTTTCTTGTGTTAGAGATGGAAA TTTCCAAAAAAAACCATATAATGCATTATTAGGAGAAGTTCATAAATGTTTTGTCAAATA TCCATCATATGATGGTCAATCAACATCTACTGCACAATTTATAGGTGAACAAGTTACACA TCATCCACCATTAACAGCATTCAATATTACTACTTCAGAAGGAATTACTTTAGATTGTAA TGTACAATTTTCAGCTAAATTCCATATGAACTCAGTATCAGTTGTTACAACTGGTGCAGT TAAAATTTGTATTCCAGTTAAAGTTGGTAATCAAATCAT----------
Length of 5' end seq.	579
3' end seq. ID	VFA444Z
3' end seq.	>VFA444Z.Seq ----------AAAACCATATAATGCATTATTAGGAGAAGTTCATAAATGTTTTGTCAAAT ATCCATCATATGATGGTCAATCAACATCTACTGCACAATTTATAGGTGAACAAGTTACAC ATCATCCACCATTAACAGCATTCAATATTACTACTTCAGAAGGAATTACTTTAGATTGTA ATGTACAATTTTCAGCTAAATTCCATATGAACTCAGTATCAGTTGTTACAACTGGTGCAG TTAAAATTTGTATTCCAGTTAAAGTTGGTAATCAAATCATTAAAGAAACATATATCATTG ATAAAGGTTTACCAGATGCTTTGGTAAAGAATGTAATTTTTGGTACTAGATCAATTTATT GGACTGATTCTGTTGATATAATGTGTGAAGATTCAAAAACTTCTGCAACTGTTCATTTCG ATAAGAATGAATATGTTAAAGGTGAAGTTTCAGTTTATAATACAGAATTAGAAGTTGAAG AGCATAGAGCATCTTTAAAGGGATATATTAGTGATGTTGTCAATATCGATTATTTAGAAT CAAAATCATCTGAAGCTGCACCAGCATCTTCTGCAAGTAAAAAAGAAAAGAAGAAAGAAA AGAAGAAAGCAAAACATTCAAAACATACATGTAGTCCATCTGATACCATTTTAATGGATA CTAAACAATTAGAACCAAATTCAACTTTATATCCAAAACAAACGATCCAATACTTCATTA GGTACTGGAAAGAAGTACAAAACAAAT
Length of 3' end seq.	737
Connected seq. ID	VFA444P
Connected seq.	>VFA444P.Seq ATAAATGGAGGCCGATCCGAGCTTAGTTTCTTATGCAGGCCAACATGGTGAATGGGAAAC TCGTGAAATTTCAATCTTTGGTGTTGTAAAAAGTTTTATTTCTCAATTATCAATTGGTCA AGAGTTGACAAAAGTTAGTATGCCATCAATTTTTTTAATGCCATATTCAATTTTAGAGTT AGCAGCATCAAGACATCTTAAATATATACACCTTTTAATTTCAGCCCAACACGAAGAAGA TCCATTAAAAAGAATGGCAATTATTATTCAATACTTTTTTTCTTGTGTTAGAGATGGAAA TTTCCAAAAAAAACCATATAATGCATTATTAGGAGAAGTTCATAAATGTTTTGTCAAATA TCCATCATATGATGGTCAATCAACATCTACTGCACAATTTATAGGTGAACAAGTTACACA TCATCCACCATTAACAGCATTCAATATTACTACTTCAGAAGGAATTACTTTAGATTGTAA TGTACAATTTTCAGCTAAATTCCATATGAACTCAGTATCAGTTGTTACAACTGGTGCAGT TAAAATTTGTATTCCAGTTAAAGTTGGTAATCAAATCAT----------AAAACCATATA ATGCATTATTAGGAGAAGTTCATAAATGTTTTGTCAAATATCCATCATATGATGGTCAAT CAACATCTACTGCACAATTTATAGGTGAACAAGTTACACATCATCCACCATTAACAGCAT TCAATATTACTACTTCAGAAGGAATTACTTTAGATTGTAATGTACAATTTTCAGCTAAAT TCCATATGAACTCAGTATCAGTTGTTACAACTGGTGCAGTTAAAATTTGTATTCCAGTTA AAGTTGGTAATCAAATCATTAAAGAAACATATATCATTGATAAAGGTTTACCAGATGCTT TGGTAAAGAATGTAATTTTTGGTACTAGATCAATTTATTGGACTGATTCTGTTGATATAA TGTGTGAAGATTCAAAAACTTCTGCAACTGTTCATTTCGATAAGAATGAATATGTTAAAG GTGAAGTTTCAGTTTATAATACAGAATTAGAAGTTGAAGAGCATAGAGCATCTTTAAAGG GATATATTAGTGATGTTGTCAATATCGATTATTTAGAATCAAAATCATCTGAAGCTGCAC CAGCATCTTCTGCAAGTAAAAAAGAAAAGAAGAAAGAAAAGAAGAAAGCAAAACATTCAA AACATACATGTAGTCCATCTGATACCATTTTAATGGATACTAAACAATTAGAACCAAATT CAACTTTATATCCAAAACAAACGATCCAATACTTCATTAGGTACTGGAAAGAAGTACAAA ACAAAT
Length of connected seq.	1316
Full length Seq ID	VFA444E
Full length Seq.	>VFA444E.Seq ATAAATGGAGGCCGATCCGAGCTTAGTTTCTTATGCAGGCCAACATGGTGAATGGGAAAC TCGTGAAATTTCAATCTTTGGTGTTGTAAAAAGTTTTATTTCTCAATTATCAATTGGTCA AGAGTTGACAAAAGTTAGTATGCCATCAATTTTTTTAATGCCATATTCAATTTTAGAGTT AGCAGCATCAAGACATCTTAAATATATACACCTTTTAATTTCAGCCCAACACGAAGAAGA TCCATTAAAAAGAATGGCAATTATTATTCAATACTTTTTTTCTTGTGTTAGAGATGGAAA TTTCCAAAAAAAACCATATAATGCATTATTAGGAGAAGTTCATAAATGTTTTGTCAAATA TCCATCATATGATGGTCAATCAACATCTACTGCACAATTTATAGGTGAACAAGTTACACA TCATCCACCATTAACAGCATTCAATATTACTACTTCAGAAGGAATTACTTTAGATTGTAA TGTACAATTTTCAGCTAAATTCCATATGAACTCAGTATCAGTTGTTACAACTGGTGCAGT TAAAATTTGTATTCCAGTTAAAGTTGGTAATCAAATCATTAAAGAAACATATATCATTGA TAAAGGTTTACCAGATGCTTTGGTAAAGAATGTAATTTTTGGTACTAGATCAATTTATTG GACTGATTCTGTTGATATAATGTGTGAAGATTCAAAAACTTCTGCAACTGTTCATTTCGA TAAGAATGAATATGTTAAAGGTGAAGTTTCAGTTTATAATACAGAATTAGAAGTTGAAGA GCATAGAGCATCTTTAAAGGGATATATTAGTGATGTTGTCAATATCGATTATTTAGAATC AAAATCATCTGAAGCTGCACCAGCATCTTCTGCAAGTAAAAAAGAAAAGAAGAAAGAAAA GAAGAAAGCAAAACATTCAAAACATACATGTAGTCCATCTGATACCATTTTAATGGATAC TAAACAATTAGAACCAAATTCAACTTTATATCCAAAACAAACGATCCAATACTTCATTAG GTACTGGAAAGAAGTACAAAACAAAT
Length of full length seq.	1046

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas