VFA388 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VFA388
Library	VF (Link to library)
Clone ID	VFA388 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	-
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VF/VFA3-D/VFA388Q.Seq.d/
Representative seq. ID	VFA388P (Link to Original site)
Representative DNA sequence	>VFA388 (VFA388Q) /CSM/VF/VFA3-D/VFA388Q.Seq.d/ AGTATTTTCTGTACATATATTAATAGAATTGTAATAAAATGTCAAAAGTAATTACAGGAA AGCAATACTCTTGGTCAGAGTTAGCCAAACATAACACTGAAAATGATTGTTGGGTTGCAG TCGATGGTAAAGTTTATGATATTACAAGATGGGTACCATTACATCCAGGTGGTAAAGAAG TTTTACTTTTAGCAGCAGGTAGAGATGTTACAAATTTATTTGAAAGTTATCATCCAATGT CAGATAAACCAACATCAATTTTAAAGAATTATGAAATTGGATATATTTCATCATATGAAC ATCCAAAATTTGTTCAAAAATCAGATTTCTACAAGACATTAAAAGAGAGAGTTAGAAAAC ATTTTAAAGCAACCGATCAAGATCCACAAATGGCAGTTAGTATTTTCTCACGTTTAGCAT TGGTTTATCTTTTAGTGTTTGTAACTTACTATTTAGCACATTATACCAGTAACAATTTTT ATTTAAATTGTTTCTTGGCAATCGTTTACGCACTTTGCAACTCATTATTCTCAATGCATA TGATGCATGATCCATGTCATGCTGCCATTTCACATTATCCAGGCGTATGGAAATGGATGG GCGCATCATTTGATTTCGTCACTGGTGCTTCATTCCTTXXXXXXXXXXTTTCNGTATTGT CACTCCATTCCAAACTCGTTCATGGTATCATAAATATCAACACATTTACGCTCCACTCCT CTATGGTATTTACACACTCAAATATCGTACTCAAGATTGGGAAGCTTTTGTAAAGGATGG TAAAAATGGTGCAATTCGTGTTAGTGTCGCCACAAATTTCGATAAGGCCGCTTACGTCAT TGGTAAATTGTCTTTTGTTTTCTTCCGTTTCATCCTTCCACTCCGTTATCATAGCTTTAC AGATTTAATTTGTTATTTCCTCATTGCTGAATTCGTCTTTGGTTGGTATCTCACAATTAA TTTCCAAGTTAGTCATGTCGCTGAAGATCTCAAATTCTTTGCTACCCCTGAAAGACCAGA TGAACCATCTCAAGTCAATGAAGATTGGGCAATCCTTCAACTTAAAACTACTCAAGATTA TGGTCATGGTTCACTCCTTTGTACCTTTTTTAGTGGTTCTTTAAATCATCAAGTTGTTCA TCATTTATTCCCATCAATTGCTCAAGATTTCTACCCACAACTTGTACCAATTGTAAAAGA AGTTTGTAAAGAACATAACATTACTTACCACATTAAACCAAACTTCACTGAAGCTATTAT GTCACACATTAATTACCTTTACAAAATGGGTAATNATCCAGATTATGTAAAAAACCATAG CCTCAAAAGANATAAANAAAAACTAAAAACCAATATTACTTTNACAAACAG
sequence update	2001. 6. 1
Translated Amino Acid sequence	yflyiy**NCNKMSKVITGKQYSWSELAKHNTENDCWVAVDGKVYDITRWVPLHPGGKEV LLLAAGRDVTNLFESYHPMSDKPTSILKNYEIGYISSYEHPKFVQKSDFYKTLKERVRKH FKATDQDPQMAVSIFSRLALVYLLVFVTYYLAHYTSNNFYLNCFLAIVYALCNSLFSMHM MHDPCHAAISHYPGVWKWMGASFDFVTGASFL--- ---FXIVTPFQTRSWYHKYQHIYAPLLYGIYTLKYRTQDWEAFVKDGKNGAIRVSVATNF DKAAYVIGKLSFVFFRFILPLRYHSFTDLICYFLIAEFVFGWYLTINFQVSHVAEDLKFF ATPERPDEPSQVNEDWAILQLKTTQDYGHGSLLCTFFSGSLNHQVVHHLFPSIAQDFYPQ LVPIVKEVCKEHNITYHIKPNFTEAIMSHINYLYKMGNXPDYVKNHSLKRXKXKLKTNIT XTN
Translated Amino Acid sequence (All Frames)	Frame A: sifctyinrivikcqklqesntlgqspnitlkmivglqsmvkfmilqdgyhyiqvvkk fyfqqvemlqiylkviiqcqinqhqfrimkldifhhmniqnlfknqistrhkrelen ilkqpikihkwqlvfshvhwfifclltihiipvtifiivswqsfthfathysqci cmihvmlpfhiiqaygngwahhlisslvlhs--- ---fxychsipnsfmvsisthlrstplwylhtqisysrlgsfckgwkwcnsccrhkf rgrlrhwivfcflpfhpstplslyrfnllfphcirlwlvshnfpsscrrsqil cypktrtissqrlgnpstnysrlwswftplylfwffkssscssfipincsrflpt tctnckrslrthylphtklhsyyvthlplqngxsrlckkppqkxxktknqyy fxkq Frame B: vfsvhiliel*nvksnyrkaillvrvsqthkllgcsrwslyykmgtitsrwrs ftfssrrcykfiklssnvrtninfkelnwiyfiitskicskirflqdikreskt fsnrsrstngsyfltfsiglsfsvcnllfstlyqqflfklflgnrlrtlqliilnay dasmscchftlsrrmemdgriifrhwcfip--- ---FXIVTPFQTRSWYHKYQHIYAPLLYGIYTLKYRTQDWEAFVKDGKNGAIRVSVATNF DKAAYVIGKLSFVFFRFILPLRYHSFTDLICYFLIAEFVFGWYLTINFQVSHVAEDLKFF ATPERPDEPSQVNEDWAILQLKTTQDYGHGSLLCTFFSGSLNHQVVHHLFPSIAQDFYPQ LVPIVKEVCKEHNITYHIKPNFTEAIMSHINYLYKMGNXPDYVKNHSLKRXKXKLKTNIT XTN Frame C: yflyiy*NCNKMSKVITGKQYSWSELAKHNTENDCWVAVDGKVYDITRWVPLHPGGKEV LLLAAGRDVTNLFESYHPMSDKPTSILKNYEIGYISSYEHPKFVQKSDFYKTLKERVRKH FKATDQDPQMAVSIFSRLALVYLLVFVTYYLAHYTSNNFYLNCFLAIVYALCNSLFSMHM MHDPCHAAISHYPGVWKWMGASFDFVTGASFL--- ---svlslhsklvhgiinintftlhssmvfthsnivlkigkllrmvkmvqfvlvspqis irpltslvncllfssvssfhsviialqifvissllnsslvgisqlisklvmslkisnsl lplkdqmnhlksmkigqsfnlkllkimvmvhsfvpflvvliiklfiiyshqllkisthn lyqlkkfvknitllttlnqtslkllchtlitftkwvxiqimktiaskxixkn*kpill xqt
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VFA388 (VFA388Q) /CSM/VF/VFA3-D/VFA388Q.Seq.d/ 2629 0.0 VFI746 (VFI746Q) /CSM/VF/VFI7-B/VFI746Q.Seq.d/ 1344 0.0 VFO589 (VFO589Q) /CSM/VF/VFO5-D/VFO589Q.Seq.d/ 1332 0.0 VFN123 (VFN123Q) /CSM/VF/VFN1-A/VFN123Q.Seq.d/ 1324 0.0 VFA219 (VFA219Q) /CSM/VF/VFA2-A/VFA219Q.Seq.d/ 1314 0.0 VFM295 (VFM295Q) /CSM/VF/VFM2-D/VFM295Q.Seq.d/ 1312 0.0 VFB864 (VFB864Q) /CSM/VF/VFB8-C/VFB864Q.Seq.d/ 1308 0.0 SSB813 (SSB813Q) /CSM/SS/SSB8-A/SSB813Q.Seq.d/ 1304 0.0 SLA259 (SLA259Q) /CSM/SL/SLA2-C/SLA259Q.Seq.d/ 1304 0.0 VFF269 (VFF269Q) /CSM/VF/VFF2-C/VFF269Q.Seq.d/ 1298 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N BD092935\|BD092935.1 Methods and compositions for synthesis of long chain polyunsaturated fatty acids in plants. 1281 0.0 2 BD082645\|BD082645.1 Methods and compositions for synthesis of long chain polyunsaturated fatty acids. 1281 0.0 2 BD082630\|BD082630.1 Methods and compositions for synthesis of long chain poly-unsaturated fatty acids. 1281 0.0 2 AB029311\|AB029311.1 Dictyostelium discoideum Dd des5 gene for fatty acid desaturase, complete cds. 975 0.0 5 AB022097\|AB022097.1 Dictyostelium discoideum mRNA for delta 5 fatty acid desaturase, complete cds. 149 e-114 12 AL355612\|AL355612.8 Human DNA sequence from clone RP11-343P23 on chromosome 6 Contains GSSs. 42 0.19 3 AC116984\|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 34 0.27 16 AC137050\|AC137050.1 Rattus norvegicus clone CH230-unknown, * SEQUENCING IN PROGRESS , 2 unordered pieces. 48 0.29 1 AC117308\|AC117308.7 Rattus norvegicus clone CH230-216M16, SEQUENCING IN PROGRESS , 2 unordered pieces. 48 0.29 1 AC117128\|AC117128.8 Rattus norvegicus clone CH230-230O8, SEQUENCING IN PROGRESS *, 5 unordered pieces. 48 0.29 1
dna update	2003. 8.16
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q9Y1W0) RecName: Full=Delta(5) fatty acid desaturase A; ... 462 0.0 (O96099) RecName: Full=Delta(5) fatty acid desaturase B; ... 318 e-156 (Q1ZXQ5) RecName: Full=Probable Delta(5) fatty acid desaturase C... 268 e-139 AB188307_1(AB188307\|pid:none) Mortierella alpina gene for delta5... 162 7e-73 (O74212) RecName: Full=Delta(5) fatty acid desaturase; ... 157 4e-72 CQ831428_1(CQ831428\|pid:none) Sequence 9 from Patent WO2004057001. 142 3e-59 EF678404_1(EF678404\|pid:none) Picea sitchensis clone WS0291_A04 ... 143 3e-58 CP001574_328(CP001574\|pid:none) Micromonas sp. RCC299 chromosome... 145 1e-56 CP000592_278(CP000592\|pid:none) Ostreococcus lucimarinus CCE9901... 155 2e-56 AM949596_1(AM949596\|pid:none) Mantoniella squamata d5 gene for A... 131 3e-56
protein update	2009. 6.16
PSORT	psg: 0.70 gvh: 0.24 alm: 0.25 top: 0.63 tms: 0.07 mit: 0.31 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.05 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 0.00 48.0 %: nuclear 28.0 %: cytoplasmic 12.0 %: mitochondrial 8.0 %: Golgi 4.0 %: vesicles of secretory system >> prediction for VFA388 is nuc
5' end seq. ID	VFA388F
5' end seq.	>VFA388F.Seq AGTATTTTCTGTACATATATTAATAGAATTGTAATAAAATGTCAAAAGTAATTACAGGAA AGCAATACTCTTGGTCAGAGTTAGCCAAACATAACACTGAAAATGATTGTTGGGTTGCAG TCGATGGTAAAGTTTATGATATTACAAGATGGGTACCATTACATCCAGGTGGTAAAGAAG TTTTACTTTTAGCAGCAGGTAGAGATGTTACAAATTTATTTGAAAGTTATCATCCAATGT CAGATAAACCAACATCAATTTTAAAGAATTATGAAATTGGATATATTTCATCATATGAAC ATCCAAAATTTGTTCAAAAATCAGATTTCTACAAGACATTAAAAGAGAGAGTTAGAAAAC ATTTTAAAGCAACCGATCAAGATCCACAAATGGCAGTTAGTATTTTCTCACGTTTAGCAT TGGTTTATCTTTTAGTGTTTGTAACTTACTATTTAGCACATTATACCAGTAACAATTTTT ATTTAAATTGTTTCTTGGCAATCGTTTACGCACTTTGCAACTCATTATTCTCAATGCATA TGATGCATGATCCATGTCATGCTGCCATTTCACATTATCCAGGCGTATGGAAATGGATGG GCGCATCATTTGATTTCGTCACTGGTGCTTCATTCCTT----------
Length of 5' end seq.	638
3' end seq. ID	VFA388Z
3' end seq.	>VFA388Z.Seq ----------TTTCNGTATTGTCACTCCATTCCAAACTCGTTCATGGTATCATAAATATC AACACATTTACGCTCCACTCCTCTATGGTATTTACACACTCAAATATCGTACTCAAGATT GGGAAGCTTTTGTAAAGGATGGTAAAAATGGTGCAATTCGTGTTAGTGTCGCCACAAATT TCGATAAGGCCGCTTACGTCATTGGTAAATTGTCTTTTGTTTTCTTCCGTTTCATCCTTC CACTCCGTTATCATAGCTTTACAGATTTAATTTGTTATTTCCTCATTGCTGAATTCGTCT TTGGTTGGTATCTCACAATTAATTTCCAAGTTAGTCATGTCGCTGAAGATCTCAAATTCT TTGCTACCCCTGAAAGACCAGATGAACCATCTCAAGTCAATGAAGATTGGGCAATCCTTC AACTTAAAACTACTCAAGATTATGGTCATGGTTCACTCCTTTGTACCTTTTTTAGTGGTT CTTTAAATCATCAAGTTGTTCATCATTTATTCCCATCAATTGCTCAAGATTTCTACCCAC AACTTGTACCAATTGTAAAAGAAGTTTGTAAAGAACATAACATTACTTACCACATTAAAC CAAACTTCACTGAAGCTATTATGTCACACATTAATTACCTTTACAAAATGGGTAATNATC CAGATTATGTAAAAAACCATAGCCTCAAAAGANATAAANAAAAACTAAAAACCAATATTA CTTTNACAAACAG
Length of 3' end seq.	723
Connected seq. ID	VFA388P
Connected seq.	>VFA388P.Seq AGTATTTTCTGTACATATATTAATAGAATTGTAATAAAATGTCAAAAGTAATTACAGGAA AGCAATACTCTTGGTCAGAGTTAGCCAAACATAACACTGAAAATGATTGTTGGGTTGCAG TCGATGGTAAAGTTTATGATATTACAAGATGGGTACCATTACATCCAGGTGGTAAAGAAG TTTTACTTTTAGCAGCAGGTAGAGATGTTACAAATTTATTTGAAAGTTATCATCCAATGT CAGATAAACCAACATCAATTTTAAAGAATTATGAAATTGGATATATTTCATCATATGAAC ATCCAAAATTTGTTCAAAAATCAGATTTCTACAAGACATTAAAAGAGAGAGTTAGAAAAC ATTTTAAAGCAACCGATCAAGATCCACAAATGGCAGTTAGTATTTTCTCACGTTTAGCAT TGGTTTATCTTTTAGTGTTTGTAACTTACTATTTAGCACATTATACCAGTAACAATTTTT ATTTAAATTGTTTCTTGGCAATCGTTTACGCACTTTGCAACTCATTATTCTCAATGCATA TGATGCATGATCCATGTCATGCTGCCATTTCACATTATCCAGGCGTATGGAAATGGATGG GCGCATCATTTGATTTCGTCACTGGTGCTTCATTCCTT----------TTTCNGTATTGT CACTCCATTCCAAACTCGTTCATGGTATCATAAATATCAACACATTTACGCTCCACTCCT CTATGGTATTTACACACTCAAATATCGTACTCAAGATTGGGAAGCTTTTGTAAAGGATGG TAAAAATGGTGCAATTCGTGTTAGTGTCGCCACAAATTTCGATAAGGCCGCTTACGTCAT TGGTAAATTGTCTTTTGTTTTCTTCCGTTTCATCCTTCCACTCCGTTATCATAGCTTTAC AGATTTAATTTGTTATTTCCTCATTGCTGAATTCGTCTTTGGTTGGTATCTCACAATTAA TTTCCAAGTTAGTCATGTCGCTGAAGATCTCAAATTCTTTGCTACCCCTGAAAGACCAGA TGAACCATCTCAAGTCAATGAAGATTGGGCAATCCTTCAACTTAAAACTACTCAAGATTA TGGTCATGGTTCACTCCTTTGTACCTTTTTTAGTGGTTCTTTAAATCATCAAGTTGTTCA TCATTTATTCCCATCAATTGCTCAAGATTTCTACCCACAACTTGTACCAATTGTAAAAGA AGTTTGTAAAGAACATAACATTACTTACCACATTAAACCAAACTTCACTGAAGCTATTAT GTCACACATTAATTACCTTTACAAAATGGGTAATNATCCAGATTATGTAAAAAACCATAG CCTCAAAAGANATAAANAAAAACTAAAAACCAATATTACTTTNACAAACAG
Length of connected seq.	1361
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas