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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFA356
Library VF
(Link to library)
Clone ID VFA356
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14976-1
Original site URL
Representative seq. ID VFA356P
(Link to Original site)
Representative DNA sequence 
>VFA356 (VFA356Q) /CSM/VF/VFA3-C/VFA356Q.Seq.d/
AATAATTTAGTTCAAGAATATAAAGATTATTCATTAGAACAAGGATACACACTTGCTGAT
TTTGGATTTGAACAACCAACAGGTTTAGCTCGTCCACAAAAGAAGAAATCAGCACGTGAA
TCAAATCAAGTACAACAATACACTGAAGAAGTTCAAATACTTTCACAACGTAGTAAAGTA
TTTATAGATAAAGGTGATTATAATAGTGCTCTTCCATGTTTGGAACGTATTGTTGAAATC
TCTCAAGAATATCCACCATTTGCAAGTTATGGTAGAAATGCAATCCTTTTTATAATTAAA
TTCTCTCAAGAAGCTGGTGATTATGATTTATATTCTAAATATGCAAAAGTTCTTATTGAA
TCAATTGATAATCCAGATAAAGGTGAACTTGAAAGTATTGCTAAAATGGTAGCTGATTTT
GCAAATAGATTATTGGAAGCTGATAAAAGTTTAAATGCTATTGATATAATTAAGTCATCA
ATGGAAAGATATAXXXXXXXXXXTATTAATTCTTTAATTACTTTATATGAATATTACTCA
AAAGAAGGAAATTTCGAAAAAATGAGAGAAACTGTTTCAAGGTGTTGAGGAACATTTAGA
TCCAAAATATTCAGTTTCAATTTACAAATATCTTGCAGAAAGTGCAAAGAGTTACGAACA
TTATGAAGACTATTATTCATTAGTTGATAAATTAATTGGAGTATTAGCAAAATCAGAAGC
TGATCCAGTTAATAAAGAGAATATTGTCATCTCTGTTAAATTAGAGAAAGCTGAAACTTT
AATGTCAACTGGTTCCACAGAAAAAGCAAAGGAAATATACGATCAAATTAAACAAAATGA
ATATTTCTGTTTTGCAACCAAATCTAAATCAAAGTATCTCTCTGTTGAACATGTTACCTC
TGCCAAAGGTCTTCAATCAATTTGTGTCGGTCAAAAATTAAATACTACTTTACCTTCAGC
TGATACTATTTTAGTTGTTGATTTTGAAAATGTTGAAGAAAAGAAAGAAGTAGAAGAAGA
AGAAAAAGTNAACAAGTTAAAGTGAACAAGTTAAAGTNAACAAGTTAAAGTTAACAAGAA
GAAAAAGAAGAAGAAAAGAAAGAAGAAGAAGAAAAAGTTAAGAGGAAAAAGAAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
NNLVQEYKDYSLEQGYTLADFGFEQPTGLARPQKKKSARESNQVQQYTEEVQILSQRSKV
FIDKGDYNSALPCLERIVEISQEYPPFASYGRNAILFIIKFSQEAGDYDLYSKYAKVLIE
SIDNPDKGELESIAKMVADFANRLLEADKSLNAIDIIKSSMERY---

---INSLITLYEYYSKEGNFEKMRETVSRC*gtfrskifsfnlqiscrkckelrtl*rll
fis**inwsiskirs*ss**reychlc*ires*nfnvnwfhrkskgnirsn*tk*iflfc
nqi*ikvslc*tcylcqrssinlcrskikyyftfs*yyfsc*f*kc*rkersrrrrksxq
vkvnklkxts*s*qeekeeekkeeeekvkrkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
NNLVQEYKDYSLEQGYTLADFGFEQPTGLARPQKKKSARESNQVQQYTEEVQILSQRSKV
FIDKGDYNSALPCLERIVEISQEYPPFASYGRNAILFIIKFSQEAGDYDLYSKYAKVLIE
SIDNPDKGELESIAKMVADFANRLLEADKSLNAIDIIKSSMERY---

---y*ffnyfi*illkrrkfrknerncfkvlrni*iqniqfqftnilqkvqrvtnimkti
ih*lin*ley*qnqkliqlikrilsslln*rklkl*cqlvpqkkqrkytiklnkmnisvl
qpnlnqsisllnmlplpkvfnqfvsvkn*illylqlilf*llilkmlkkrkk*kkkkkxt
s*seqvkvnklkltrrkrrrkerrrrks*eekek

Frame B:
ii*fknikiih*nkdthllildlnnqqv*lvhkrrnqhvnqikynntlkkfkyfhnvvky
l*ikviiivlfhvwnvllkslknihhlqvmvemqsfl*lnslkklvimiyilnmqkflln
qliiqikvnlkvllkw*lilqidywklikv*mlli*lshqwkdi---

---INSLITLYEYYSKEGNFEKMRETVSRC*gtfrskifsfnlqiscrkckelrtl*rll
fis**inwsiskirs*ss**reychlc*ires*nfnvnwfhrkskgnirsn*tk*iflfc
nqi*ikvslc*tcylcqrssinlcrskikyyftfs*yyfsc*f*kc*rkersrrrrksxq
vkvnklkxts*s*qeekeeekkeeeekvkrkkk

Frame C:
*fssri*rlfirtrihtc*fwi*ttnrfssstkeeist*ikssttih*rssntftt**si
yr*r*l**cssmfgtyc*nlsristicklw*kcnpfyn*ilsrsw*l*fif*ickssy*i
n**sr*r*t*kyc*ngs*fck*iigs**kfkcy*yn*vingki---

---lil*llymnitqkkeiskk*eklfqgveehldpkysvsiykylaesaksyehyedyy
slvdkligvlakseadpvnkenivisvklekaetlmstgstekakeiydqikqneyfcfa
tkskskylsvehvtsakglqsicvgqklnttlpsadtilvvdfenveekkeveeeekvnk
lk*ts*sxqvkvnkkkkkkkrkkkkkklrgkrk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFA356 (VFA356Q) /CSM/VF/VFA3-C/VFA356Q.Seq.d/                       1909   0.0
VHA688 (VHA688Q) /CSM/VH/VHA6-D/VHA688Q.Seq.d/                        977   0.0
SFH647 (SFH647Q) /CSM/SF/SFH6-B/SFH647Q.Seq.d/                        977   0.0
CFJ116 (CFJ116Q) /CSM/CF/CFJ1-A/CFJ116Q.Seq.d/                        977   0.0
VFO782 (VFO782Q) /CSM/VF/VFO7-D/VFO782Q.Seq.d/                        969   0.0
CHE433 (CHE433Q) /CSM/CH/CHE4-B/CHE433Q.Seq.d/                        969   0.0
AFL783 (AFL783Q) /CSM/AF/AFL7-D/AFL783Q.Seq.d/                        969   0.0
VFI305 (VFI305Q) /CSM/VF/VFI3-A/VFI305Q.Seq.d/                        963   0.0
VFM529 (VFM529Q) /CSM/VF/VFM5-B/VFM529Q.Seq.d/                        955   0.0
VFM411 (VFM411Q) /CSM/VF/VFM4-A/VFM411Q.Seq.d/                        955   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

CC195284|CC195284.1 CH261-111J7 CH261 Gallus gallus genomic clone CH261-111J7, DNA sequence.    48  0.24  1
AI680909|AI680909.1 tx42f10.x1 NCI_CGAP_Lu24 Homo sapiens cDNA clone IMAGE:2272267 3', mRNA sequence.    34  0.77  2
AW020857|AW020857.1 df15e07.y1 Morton Fetal Cochlea Homo sapiens cDNA clone IMAGE:2483436 5', mRNA sequence.    34  0.79  2
AC108325|AC108325.5 Rattus norvegicus clone CH230-302G14, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    32  0.87  7
AA909479|AA909479.1 ol16a07.s1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA clone IMAGE:1523604 3', mRNA sequence.    34  0.88  2
AA595745|AA595745.1 nj28e07.s1 NCI_CGAP_AA1 Homo sapiens cDNA clone IMAGE:993828 3', mRNA sequence.    34  0.92  2
H93306|H93306.1 yv06f12.s1 Soares fetal liver spleen 1NFLS Homo sapiens cDNA clone IMAGE:241967 3', mRNA sequence.    34  0.92  2
AI806067|AI806067.1 te48c10.x1 Soares_NhHMPu_S1 Homo sapiens cDNA clone IMAGE:2089938 3', mRNA sequence.    34  0.93  2
AI332450|AI332450.1 qq25d05.x1 Soares_NhHMPu_S1 Homo sapiens cDNA clone IMAGE:1933545 3', mRNA sequence.    34  0.96  2
BH108482|BH108482.1 RPCI-24-352G1.TVB RPCI-24 Mus musculus genomic clone RPCI-24-352G1, DNA sequence.    46  0.96  1
dna update 2003. 8.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000416_142(CP000416|pid:none) Lactobacillus brevis ATCC 367, c...    38   0.58
AP008955_2727(AP008955|pid:none) Brevibacillus brevis NBRC 10059...    38   0.75
AB016884_2(AB016884|pid:none) Arabidopsis thaliana genomic DNA, ...    38   0.75
CP001080_329(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP1...    37   1.7
CP000001_976(CP000001|pid:none) Bacillus cereus E33L, complete g...    36   2.2
CP001013_1954(CP001013|pid:none) Leptothrix cholodnii SP-6, comp...    36   2.2
T28676(T28676;A45521)rhoptry protein - Plasmodium yoelii (fragme...    35   3.7
AF315285_1(AF315285|pid:none) Plasmodium yoelii yoelii p235 rhop...    35   3.7
AF315287_1(AF315287|pid:none) Plasmodium yoelii yoelii p235 rhop...    35   3.7
AF315281_1(AF315281|pid:none) Plasmodium yoelii yoelii p235 rhop...    35   3.7
protein update 2009. 6.16
PSORT 

 psg: 0.75  gvh: 0.38  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: Golgi

>> prediction for VFA356 is cyt
5' end seq. ID VFA356F
5' end seq. 
>VFA356F.Seq
AATAATTTAGTTCAAGAATATAAAGATTATTCATTAGAACAAGGATACACACTTGCTGAT
TTTGGATTTGAACAACCAACAGGTTTAGCTCGTCCACAAAAGAAGAAATCAGCACGTGAA
TCAAATCAAGTACAACAATACACTGAAGAAGTTCAAATACTTTCACAACGTAGTAAAGTA
TTTATAGATAAAGGTGATTATAATAGTGCTCTTCCATGTTTGGAACGTATTGTTGAAATC
TCTCAAGAATATCCACCATTTGCAAGTTATGGTAGAAATGCAATCCTTTTTATAATTAAA
TTCTCTCAAGAAGCTGGTGATTATGATTTATATTCTAAATATGCAAAAGTTCTTATTGAA
TCAATTGATAATCCAGATAAAGGTGAACTTGAAAGTATTGCTAAAATGGTAGCTGATTTT
GCAAATAGATTATTGGAAGCTGATAAAAGTTTAAATGCTATTGATATAATTAAGTCATCA
ATGGAAAGATATA----------
Length of 5' end seq. 493
3' end seq. ID VFA356Z
3' end seq. 
>VFA356Z.Seq
----------TATTAATTCTTTAATTACTTTATATGAATATTACTCAAAAGAAGGAAATT
TCGAAAAAATGAGAGAAACTGTTTCAAGGTGTTGAGGAACATTTAGATCCAAAATATTCA
GTTTCAATTTACAAATATCTTGCAGAAAGTGCAAAGAGTTACGAACATTATGAAGACTAT
TATTCATTAGTTGATAAATTAATTGGAGTATTAGCAAAATCAGAAGCTGATCCAGTTAAT
AAAGAGAATATTGTCATCTCTGTTAAATTAGAGAAAGCTGAAACTTTAATGTCAACTGGT
TCCACAGAAAAAGCAAAGGAAATATACGATCAAATTAAACAAAATGAATATTTCTGTTTT
GCAACCAAATCTAAATCAAAGTATCTCTCTGTTGAACATGTTACCTCTGCCAAAGGTCTT
CAATCAATTTGTGTCGGTCAAAAATTAAATACTACTTTACCTTCAGCTGATACTATTTTA
GTTGTTGATTTTGAAAATGTTGAAGAAAAGAAAGAAGTAGAAGAAGAAGAAAAAGTNAAC
AAGTTAAAGTGAACAAGTTAAAGTNAACAAGTTAAAGTTAACAAGAAGAAAAAGAAGAAG
AAAAGAAAGAAGAAGAAGAAAAAGTTAAGAGGAAAAAGAAAAA
Length of 3' end seq. 633
Connected seq. ID VFA356P
Connected seq. 
>VFA356P.Seq
AATAATTTAGTTCAAGAATATAAAGATTATTCATTAGAACAAGGATACACACTTGCTGAT
TTTGGATTTGAACAACCAACAGGTTTAGCTCGTCCACAAAAGAAGAAATCAGCACGTGAA
TCAAATCAAGTACAACAATACACTGAAGAAGTTCAAATACTTTCACAACGTAGTAAAGTA
TTTATAGATAAAGGTGATTATAATAGTGCTCTTCCATGTTTGGAACGTATTGTTGAAATC
TCTCAAGAATATCCACCATTTGCAAGTTATGGTAGAAATGCAATCCTTTTTATAATTAAA
TTCTCTCAAGAAGCTGGTGATTATGATTTATATTCTAAATATGCAAAAGTTCTTATTGAA
TCAATTGATAATCCAGATAAAGGTGAACTTGAAAGTATTGCTAAAATGGTAGCTGATTTT
GCAAATAGATTATTGGAAGCTGATAAAAGTTTAAATGCTATTGATATAATTAAGTCATCA
ATGGAAAGATATA----------TATTAATTCTTTAATTACTTTATATGAATATTACTCA
AAAGAAGGAAATTTCGAAAAAATGAGAGAAACTGTTTCAAGGTGTTGAGGAACATTTAGA
TCCAAAATATTCAGTTTCAATTTACAAATATCTTGCAGAAAGTGCAAAGAGTTACGAACA
TTATGAAGACTATTATTCATTAGTTGATAAATTAATTGGAGTATTAGCAAAATCAGAAGC
TGATCCAGTTAATAAAGAGAATATTGTCATCTCTGTTAAATTAGAGAAAGCTGAAACTTT
AATGTCAACTGGTTCCACAGAAAAAGCAAAGGAAATATACGATCAAATTAAACAAAATGA
ATATTTCTGTTTTGCAACCAAATCTAAATCAAAGTATCTCTCTGTTGAACATGTTACCTC
TGCCAAAGGTCTTCAATCAATTTGTGTCGGTCAAAAATTAAATACTACTTTACCTTCAGC
TGATACTATTTTAGTTGTTGATTTTGAAAATGTTGAAGAAAAGAAAGAAGTAGAAGAAGA
AGAAAAAGTNAACAAGTTAAAGTGAACAAGTTAAAGTNAACAAGTTAAAGTTAACAAGAA
GAAAAAGAAGAAGAAAAGAAAGAAGAAGAAGAAAAAGTTAAGAGGAAAAAGAAAAA
Length of connected seq. 1126
Full length Seq ID -
Full length Seq. -
Length of full length seq. -