VFA308
Library VF
(Link to library)
Clone ID VFA308
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14349-1
Original site URL
Representative seq. ID VFA308P
(Link to Original site)
Representative DNA sequence
>VFA308 (VFA308Q) /CSM/VF/VFA3-A/VFA308Q.Seq.d/
AAAAATAACGGTGAATACCTCGACTCCTAAATCGATGAAGACCGTAGCAAACTGCGATAA
TTCACTTGAATTGCAGCCTACTGGGATAGTTGAAATGTTGAACGCACATGATGACATCGG
TCCTTTCGGATTAGGTGTTATACTTGGGTGAGAGTGGTCAACTTACTCAACTAAATAAAA
AACTATATATAAAAAATGTCTTCAGGTATTGCTTTAGCTCCAAACTGCGTTTCAACCTTC
AACGATTTAAAGTTAGGTCGTAAATATGGTGGTATCATCTACAGAATCTCTGACGATTCA
AAAGAAATCATTGTTGACTCCACCTTACCAGCTGGTTGTTCATTCGATGAATTCACCAAA
TGTCTCCCAGAAAACGAATGTAGATACGGTTGTCCTCGACTATCAATACAAAGAAGAAGG
TGCCCAAAAGAGCAAAATCTGTTTTGTTGCCTGGTGCCCAGATACCGCCAACATTAAAAA
GAAAATGATGGCCACCTCATCAAAAGACTCTTTTACGTAAAGCCTGTGGTTGGTATCCAA
GTTGAAATCCAAGGTACCGATGCCTCTGAAGTCAAAGATTCAXXXXXXXXXXAATAAACG
GTGAATACCTCGACTCNTAAATCGATGAAGNCCGTAGCAAACTNNGATAATTCACTTGAN
ATTGCAGCCTNCTGGGATAGTTGNAATGTTGAACGCACATGATGACATCGGTCCTTTCGG
ATTAGGTGTTATACTTGGGTGAGAGTGGTCAACTTACTCAACTAAATAAAAAACTATATA
TAAAAAATGTCTTCAGGTATTGCTTTAGCTCCAAACTGCGTTTCAACCTTCAACGATTTA
AAGTTAGGTCGTAAATATGGTGGTATCATCTACAGAATCTCTGACGATTCAAAAGAAATC
ATTGTTGACTCCACCTTACCAGCTGGTTGTTCATTCGATGAATTCACCAAATGTCTCCCA
GAAAACGAATGTAGATACGTTGTCCTCGACTATCAATACAAAGAAGAAGGTGCCCAAAAG
AGCAAAATCTGTTTTGTTGCCTGGTGCCCAGATACCGCCAACATTAAAAAGAAAATGATG
GCCACCTCATCAAAAGACTCTTTACGTAAAGCCTGTGTTGGTAT
sequence update 2001. 6. 1
Translated Amino Acid sequence
knngeylds*idedrsklr*ft*iaaywds*nvert**hrsfrircytwvrvvnlln*ik
nyi*kmssgialapncvstfndlklgrkyggiiyrisddskeiivdstlpagcsfdeftk
clpenecrygcprlsiqrrrcpkeqnlfcclvpryrqh*KENDGHLIKRLFYVKPVVGIQ
VEIQGTDASEVKDS---

---INGEYLDS*idexrsklx*ft*xcsllg*lxc*thmmtsvlsd*vlylgesgqltql
nkklyiknvfrycfssklrfnlqrfkvrs*iwwyhlqnl*rfkrnhc*lhltswlfir*i
hqmsprkrm*ircprlsiqrrrcpkeqnlfcclvpryrqh*kendghlikrlft*slcwy


Translated Amino Acid sequence (All Frames)
Frame A:
knngeylds*idedrsklr*ft*iaaywds*nvert**hrsfrircytwvrvvnlln*ik
nyi*kmssgialapncvstfndlklgrkyggiiyrisddskeiivdstlpagcsfdeftk
clpenecrygcprlsiqrrrcpkeqnlfcclvpryrqh*KENDGHLIKRLFYVKPVVGIQ
VEIQGTDASEVKDS---

---nkr*iprlxnr*xp*qtxiihlxlqpxgivxmlnahddigpfglgvilg*ewstyst
k*ktiykkclqvll*lqtafqpsti*s*vvnmvvsstesltiqkkslltppyqlvvhsmn
spnvsqktnvdtlsstintkkkvpkraksvllpgaqipptlkrk*wpphqktlyvkpvlv

Frame B:
kitvntstpksmktvancdnslelqptgivemlnahddigpfglgvilg*ewstystk*k
tiykkclqvll*lqtafqpsti*s*vvnmvvsstesltiqkkslltppyqlvvhsmnspn
vsqktnvdtvvldyqykeegaqkskicfvawcpdtanikkkmmatsskdsft*slwlvsk
lkskvpmplkski---

---INGEYLDS*idexrsklx*ft*xcsllg*lxc*thmmtsvlsd*vlylgesgqltql
nkklyiknvfrycfssklrfnlqrfkvrs*iwwyhlqnl*rfkrnhc*lhltswlfir*i
hqmsprkrm*ircprlsiqrrrcpkeqnlfcclvpryrqh*kendghlikrlft*slcwy

Frame C:
k*r*iprllnr*rp*qtaiihlncsllg*lkc*thmmtsvlsd*vlylgesgqltqlnkk
lyiknvfrycfssklrfnlqrfkvrs*iwwyhlqnl*rfkrnhc*lhltswlfir*ihqm
sprkrm*irlsstintkkkvpkraksvllpgaqipptlkrk*wpphqktllrkacgwyps
*npryrcl*sqrf---

---*tvntstxksmkxvanxdnslxiaaxwdsxnvert**hrsfrircytwvrvvnlln*
iknyi*kmssgialapncvstfndlklgrkyggiiyrisddskeiivdstlpagcsfdef
tkclpenecryvvldyqykeegaqkskicfvawcpdtanikkkmmatsskdslrkacvg

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFA308 (VFA308Q) /CSM/VF/VFA3-A/VFA308Q.Seq.d/ 1019 0.0
VSJ890 (VSJ890Q) /CSM/VS/VSJ8-D/VSJ890Q.Seq.d/ 718 0.0
VSJ584 (VSJ584Q) /CSM/VS/VSJ5-D/VSJ584Q.Seq.d/ 718 0.0
VSJ550 (VSJ550Q) /CSM/VS/VSJ5-C/VSJ550Q.Seq.d/ 718 0.0
VSJ437 (VSJ437Q) /CSM/VS/VSJ4-B/VSJ437Q.Seq.d/ 718 0.0
VSJ243 (VSJ243Q) /CSM/VS/VSJ2-B/VSJ243Q.Seq.d/ 718 0.0
VSI135 (VSI135Q) /CSM/VS/VSI1-B/VSI135Q.Seq.d/ 718 0.0
VSG665 (VSG665Q) /CSM/VS/VSG6-C/VSG665Q.Seq.d/ 718 0.0
VSE444 (VSE444Q) /CSM/VS/VSE4-B/VSE444Q.Seq.d/ 718 0.0
VSD383 (VSD383Q) /CSM/VS/VSD3-D/VSD383Q.Seq.d/ 718 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

D37981|D37981.1 Dictyostelium discoidium DDCOF2 gene for cofilin, complete cds. 668 0.0 4
D37980|D37980.1 Dictyostelium discoidium DDCOF1 gene for cofilin, complete cds (exon1-2). 666 0.0 5
X00601|X00601.1 Dictyostelium discoideum ribosomal RNA gene. 303 3e-78 2
AY171066|AY171066.1 Dictyostelium discoideum extrachromosomal palindromic ribosomal RNA gene sequence, central segment. 303 3e-78 2
V00192|V00192.1 Dictyostelium discoideum 5.8S ribosomal RNA. 287 1e-73 2
AF219102|AF219102.1 Dictyostelium giganteum 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence. 260 3e-65 2
AF219103|AF219103.1 Dictyostelium purpureum 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence. 260 3e-65 2
AF219101|AF219101.1 Dictyostelium dimigraformum 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence. 258 1e-64 2
AF219107|AF219107.1 Polysphondylium violaceum 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence. 254 2e-63 2
AF351199|AF351199.1 Dictyostelium sphaerocephalum 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence. 252 8e-63 2
dna update 2003. 8.16
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54706) RecName: Full=Cofilin-1; &D37980_1(D37980|pid:none) &D... 233 7e-60
(P37167) RecName: Full=Actophorin; &M93361_1(M93361|pid:none) 108 3e-22
FM992692_38(FM992692|pid:none) Candida dubliniensis CD36 chromos... 107 8e-22
(Q96VU9) RecName: Full=Cofilin; AltName: Full=Actin-depolymerizi... 107 1e-21
CP000501_299(CP000501|pid:none) Pichia stipitis CBS 6054 chromos... 104 6e-21
AY428595_1(AY428595|pid:none) Helianthus annuus clone HA10-7 put... 104 6e-21
(Q9HF97) RecName: Full=Cofilin; AltName: Full=Actin-depolymerizi... 103 1e-20
(Q6CQ22) RecName: Full=Cofilin; AltName: Full=Actin-depolymerizi... 102 2e-20
(Q03048) RecName: Full=Cofilin; AltName: Full=Actin-depolymerizi... 100 9e-20
CU928179_306(CU928179|pid:none) Zygosaccharomyces rouxii strain ... 100 1e-19
protein update 2009. 6.16
PSORT

psg: 0.80 gvh: 0.45 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.15 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
24.0 %: nuclear
12.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for VFA308 is cyt

5' end seq. ID VFA308F
5' end seq.
>VFA308F.Seq
AAAAATAACGGTGAATACCTCGACTCCTAAATCGATGAAGACCGTAGCAAACTGCGATAA
TTCACTTGAATTGCAGCCTACTGGGATAGTTGAAATGTTGAACGCACATGATGACATCGG
TCCTTTCGGATTAGGTGTTATACTTGGGTGAGAGTGGTCAACTTACTCAACTAAATAAAA
AACTATATATAAAAAATGTCTTCAGGTATTGCTTTAGCTCCAAACTGCGTTTCAACCTTC
AACGATTTAAAGTTAGGTCGTAAATATGGTGGTATCATCTACAGAATCTCTGACGATTCA
AAAGAAATCATTGTTGACTCCACCTTACCAGCTGGTTGTTCATTCGATGAATTCACCAAA
TGTCTCCCAGAAAACGAATGTAGATACGGTTGTCCTCGACTATCAATACAAAGAAGAAGG
TGCCCAAAAGAGCAAAATCTGTTTTGTTGCCTGGTGCCCAGATACCGCCAACATTAAAAA
GAAAATGATGGCCACCTCATCAAAAGACTCTTTTACGTAAAGCCTGTGGTTGGTATCCAA
GTTGAAATCCAAGGTACCGATGCCTCTGAAGTCAAAGATTCA----------
Length of 5' end seq. 582
3' end seq. ID VFA308Z
3' end seq.
>VFA308Z.Seq
----------AATAAACGGTGAATACCTCGACTCNTAAATCGATGAAGNCCGTAGCAAAC
TNNGATAATTCACTTGANATTGCAGCCTNCTGGGATAGTTGNAATGTTGAACGCACATGA
TGACATCGGTCCTTTCGGATTAGGTGTTATACTTGGGTGAGAGTGGTCAACTTACTCAAC
TAAATAAAAAACTATATATAAAAAATGTCTTCAGGTATTGCTTTAGCTCCAAACTGCGTT
TCAACCTTCAACGATTTAAAGTTAGGTCGTAAATATGGTGGTATCATCTACAGAATCTCT
GACGATTCAAAAGAAATCATTGTTGACTCCACCTTACCAGCTGGTTGTTCATTCGATGAA
TTCACCAAATGTCTCCCAGAAAACGAATGTAGATACGTTGTCCTCGACTATCAATACAAA
GAAGAAGGTGCCCAAAAGAGCAAAATCTGTTTTGTTGCCTGGTGCCCAGATACCGCCAAC
ATTAAAAAGAAAATGATGGCCACCTCATCAAAAGACTCTTTACGTAAAGCCTGTGTTGGT
AT
Length of 3' end seq. 532
Connected seq. ID VFA308P
Connected seq.
>VFA308P.Seq
AAAAATAACGGTGAATACCTCGACTCCTAAATCGATGAAGACCGTAGCAAACTGCGATAA
TTCACTTGAATTGCAGCCTACTGGGATAGTTGAAATGTTGAACGCACATGATGACATCGG
TCCTTTCGGATTAGGTGTTATACTTGGGTGAGAGTGGTCAACTTACTCAACTAAATAAAA
AACTATATATAAAAAATGTCTTCAGGTATTGCTTTAGCTCCAAACTGCGTTTCAACCTTC
AACGATTTAAAGTTAGGTCGTAAATATGGTGGTATCATCTACAGAATCTCTGACGATTCA
AAAGAAATCATTGTTGACTCCACCTTACCAGCTGGTTGTTCATTCGATGAATTCACCAAA
TGTCTCCCAGAAAACGAATGTAGATACGGTTGTCCTCGACTATCAATACAAAGAAGAAGG
TGCCCAAAAGAGCAAAATCTGTTTTGTTGCCTGGTGCCCAGATACCGCCAACATTAAAAA
GAAAATGATGGCCACCTCATCAAAAGACTCTTTTACGTAAAGCCTGTGGTTGGTATCCAA
GTTGAAATCCAAGGTACCGATGCCTCTGAAGTCAAAGATTCA----------AATAAACG
GTGAATACCTCGACTCNTAAATCGATGAAGNCCGTAGCAAACTNNGATAATTCACTTGAN
ATTGCAGCCTNCTGGGATAGTTGNAATGTTGAACGCACATGATGACATCGGTCCTTTCGG
ATTAGGTGTTATACTTGGGTGAGAGTGGTCAACTTACTCAACTAAATAAAAAACTATATA
TAAAAAATGTCTTCAGGTATTGCTTTAGCTCCAAACTGCGTTTCAACCTTCAACGATTTA
AAGTTAGGTCGTAAATATGGTGGTATCATCTACAGAATCTCTGACGATTCAAAAGAAATC
ATTGTTGACTCCACCTTACCAGCTGGTTGTTCATTCGATGAATTCACCAAATGTCTCCCA
GAAAACGAATGTAGATACGTTGTCCTCGACTATCAATACAAAGAAGAAGGTGCCCAAAAG
AGCAAAATCTGTTTTGTTGCCTGGTGCCCAGATACCGCCAACATTAAAAAGAAAATGATG
GCCACCTCATCAAAAGACTCTTTACGTAAAGCCTGTGTTGGTAT
Length of connected seq. 1114
Full length Seq ID -
Full length Seq. -
Length of full length seq. -