VFA268
Library VF
(Link to library)
Clone ID VFA268
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16296-1
Original site URL
Representative seq. ID VFA268E
(Link to Original site)
Representative DNA sequence
>VFA268 (VFA268Q) /CSM/VF/VFA2-C/VFA268Q.Seq.d/
ATATTATATATGAAACATTAAAAAAATGAAAGTTATATTATTATTTGTTTTAGCTGTTTT
TACTGTTTTTGTTTCAAGTAGAGGAATTCCATTAGAAGAACAAAGTCAATTCCTTGAATT
TCAAGATAAATTCAATAAAAAATATTCACATGAAGAATATTTGGAAAGATTTGAAATTTT
TAAAAGCAATTTAGGAAAAATTGAAGAATTAAATCTAATAGCCATTAATCACAAAGCTGA
TACTAAATTTGGTGTAAACAAGTTTGCAGATCTTTCCAGTGACGAATTTAAAAATTATTA
TTTAAATAATAAGGAAGCAATATTCACTGATGACCTTCCAGTTGCTGATTATCTTGATGA
TGAATTCATTAATTCAATTCCAACTGCATTTGATTGGAGAACTAGAGGTGCTGTTACACC
TGTAAAAAATCAAGGTCAATGTGGTAGTTGTTGGTCATTTTCAACTACTGGTAATGTTGA
GGGACAACATTTCATTAGTCAGAATAAATTAGTTTCATTATCAGAGCAAAACTTGGTAGA
TTGTGATCATGAGTGTATGGAATATGAAGGTGAACAAGCTTGTGATGAGGGTTGTAATGG
TGGTCTTCAACCAAATGCATATAATTATATCATTAAAAATGGTGGAATTCAAACAGAATC
TTCATATCCTTACACTGCTGAAACAGGTACACAATGTAACTTTAACTCTGCCAATATTGG
TGCAAAGATTTCCAATTTTACAATGATCCCAAAGAATGAAACTGTAATGGCTGGGTACAT
CGTTAGTACTGGACCACTCGCAATTGCTGCTGATGCTGTTGAGTGGCAATTTTATATTGG
TGGTGTATTTGATATTCCATGTAATCCAAATTCACTTGATCATGGTATTTTAATTGTTGG
TTACTCTGCTAAAAATACAATTTTCCGTAAAAATATGCCATATTGGATTGTAAAGAATTC
TTGGGGTGCAGATTGGGGAGAACAAGGATACATTTATTTAAGAAGAGGAAAGAATACATG
TGG
sequence update 2001. 6. 9
Translated Amino Acid sequence
yyi*NIKKMKVILLFVLAVFTVFVSSRGIPLEEQSQFLEFQDKFNKKYSHEEYLERFEIF
KSNLGKIEELNLIAINHKADTKFGVNKFADLSSDEFKNYYLNNKEAIFTDDLPVADYLDD
EFINSIPTAFDWRTRGAVTPVKNQGQCGSCWSFSTTGNVEGQHFISQNKLVSLSEQNLVD
CDHECMEYEGEQACDEGCNGGLQPNAYNYIIKNGGIQTESSYPYTAETGTQCNFNSANIG
AKISNFTMIPKNETVMAGYIVSTGPLAIAADAVEWQFYIGGVFDIPCNPNSLDHGILIVG
YSAKNTIFRKNMPYWIVKNSWGADWGEQGYIYLRRGKNTC


Translated Amino Acid sequence (All Frames)
Frame A:
ilymkh*knesyiiicfscfycfcfk*rnsirrtksip*isr*iq*kift*rifgki*nf
*kqfrkn*riksnsh*sqs*y*iwckqvcrsfq*ri*kllfk**gsnih**pssc*ls**
*ih*fnsnci*len*rccytckksrsmw*llvifnyw*c*gttfh*se*isfiiraklgr
l*s*vygi*r*tsl**gl*wwsstkci*lyh*kwwnsnrifislhc*nrytm*l*lcqyw
ckdfqfyndpke*ncngwvhr*ywttrncc*cc*vailywwci*ysm*skft*swyfncw
llc*kynfp*kyaildckeflgcrlgrtrihlfkkrkeymw


Frame B:
yyi*NIKKMKVILLFVLAVFTVFVSSRGIPLEEQSQFLEFQDKFNKKYSHEEYLERFEIF
KSNLGKIEELNLIAINHKADTKFGVNKFADLSSDEFKNYYLNNKEAIFTDDLPVADYLDD
EFINSIPTAFDWRTRGAVTPVKNQGQCGSCWSFSTTGNVEGQHFISQNKLVSLSEQNLVD
CDHECMEYEGEQACDEGCNGGLQPNAYNYIIKNGGIQTESSYPYTAETGTQCNFNSANIG
AKISNFTMIPKNETVMAGYIVSTGPLAIAADAVEWQFYIGGVFDIPCNPNSLDHGILIVG
YSAKNTIFRKNMPYWIVKNSWGADWGEQGYIYLRRGKNTC


Frame C:
iiyetlkk*klyyylf*lfllflfqveefh*knkvnslnfkinsiknihmkniwkdlkfl
kai*eklkn*i**plitklilnlv*tslqifpvtnlkiii*iirkqyslmtfqlliilmm
nsliqfqlhligelevllhl*kikvnvvvvghfqllvmlrdnislvrin*fhyqsktw*i
vimsvwnmkvnklvmrvvmvvfnqmhiiislkmvefkqnlhiltllkqvhnvtltlpilv
qrfpilq*sqrmkl*wlgtslvldhsqlllmllsgnfilvvylifhviqihlimvf*llv
tllkiqfsvkichigl*rilgvqigenkdtfi*eeerihv


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFF582 (VFF582Q) /CSM/VF/VFF5-D/VFF582Q.Seq.d/ 1881 0.0
VFA268 (VFA268Q) /CSM/VF/VFA2-C/VFA268Q.Seq.d/ 1881 0.0
SFJ881 (SFJ881Q) /CSM/SF/SFJ8-D/SFJ881Q.Seq.d/ 1881 0.0
AFI295 (AFI295Q) /CSM/AF/AFI2-D/AFI295Q.Seq.d/ 1881 0.0
SFE852 (SFE852Q) /CSM/SF/SFE8-C/SFE852Q.Seq.d/ 1873 0.0
CFF469 (CFF469Q) /CSM/CF/CFF4-C/CFF469Q.Seq.d/ 1873 0.0
SFH480 (SFH480Q) /CSM/SF/SFH4-D/SFH480Q.Seq.d/ 1855 0.0
SFF369 (SFF369Q) /CSM/SF/SFF3-C/SFF369Q.Seq.d/ 1852 0.0
AFE263 (AFE263Q) /CSM/AF/AFE2-C/AFE263Q.Seq.d/ 1852 0.0
CFG231 (CFG231Q) /CSM/CF/CFG2-B/CFG231Q.Seq.d/ 1848 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X02407|X02407.1 D.discoideum mRNA for cysteine proteinase 1. 1857 0.0 2
AJ510164|AJ510164.1 Cloning vector pDXA-3strep. 101 2e-19 2
X85119|X85119.1 Artificial sequences cloning vector DNA pDXA-3H. 101 2e-19 2
X85122|X85122.1 Artificial sequences cloning vector DNA pDXA-HY. 101 2e-19 2
AJ510165|AJ510165.1 Cloning vector pDXA-3FLAG. 101 2e-19 2
X85118|X85118.1 Artificial sequences cloning vector DNA pDXA-3C. 101 2e-19 2
X85123|X85123.1 Artificial sequences cloning vector DNA pDXA-HC. 101 2e-19 2
AF269236|AF269236.1 Cloning vector pDXA-FLAG, complete sequence. 101 2e-19 2
X85120|X85120.1 Artificial sequences cloning vector DNA pDXD-3H. 101 2e-19 2
AJ510166|AJ510166.1 Cloning vector pDXA-GST. 101 2e-19 2
dna update 2003. 8.16
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P04988) RecName: Full=Cysteine proteinase 1; EC=3.4.22... 664 0.0
U42758_1(U42758|pid:none) Naegleria fowleri cysteine proteinase ... 305 1e-81
FB844544_1(FB844544|pid:none) Sequence 63817 from Patent WO20080... 279 1e-73
FJ609256_1(FJ609256|pid:none) Solanum lycopersicum cysteine prot... 278 2e-73
AJ580823_4(AJ580823|pid:none) Lotus corniculatus var. japonicus ... 278 2e-73
AJ580823_3(AJ580823|pid:none) Lotus corniculatus var. japonicus ... 278 2e-73
AC149637_11(AC149637|pid:none) Medicago truncatula clone mth2-18... 276 1e-72
BT071299_1(BT071299|pid:none) Picea sitchensis clone WS02822_C20... 276 1e-72
EF144276_1(EF144276|pid:none) Populus trichocarpa clone PX0015_D... 273 7e-72
AF411121_1(AF411121|pid:none) Sandersonia aurantiaca cysteine pr... 272 2e-71
protein update 2009. 7. 9
PSORT

psg: 0.99 gvh: 0.64 alm: 0.20 top: 0.13 tms: 0.07 mit: 0.30 mip: 0.05
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: cytoplasmic
24.0 %: endoplasmic reticulum
16.0 %: Golgi
16.0 %: nuclear
12.0 %: mitochondrial
4.0 %: extracellular, including cell wall
4.0 %: plasma membrane

>> prediction for VFA268 is cyt

5' end seq. ID VFA268F
5' end seq.
>VFA268F.Seq
ATATTATATATGAAACATTAAAAAAATGAAAGTTATATTATTATTTGTTTTAGCTGTTTT
TACTGTTTTTGTTTCAAGTAGAGGAATTCCATTAGAAGAACAAAGTCAATTCCTTGAATT
TCAAGATAAATTCAATAAAAAATATTCACATGAAGAATATTTGGAAAGATTTGAAATTTT
TAAAAGCAATTTAGGAAAAATTGAAGAATTAAATCTAATAGCCATTAATCACAAAGCTGA
TACTAAATTTGGTGTAAACAAGTTTGCAGATCTTTCCAGTGACGAATTTAAAAATTATTA
TTTAAATAATAAGGAAGCAATATTCACTGATGACCTTCCAGTTGCTGATTATCTTGATGA
TGAATTCATTAATTCAATTCCAACTGCATTTGATTGGAGAACTAGAGGTGCTGTTACACC
TGTAAAAAATCAAGGTCAATGTGGTAGTTGTTGGTCATTTTCAACTACTGGTAATGTTGA
GGGACAACATTTCATTAGTCAGAATAAATTAGTTTCATTATCAGAGCAAAACTTGGTAGA
TTGTGATCATGAGTGTATGGAATATGAAGGTGAACAAGCTTGTGATGAGGGTTGTAATGG
TGGTCTTCAACCAAATGCATATAATTATATCATTAAAAATGGTGGAATTCAAACAGAATC
TTCATAT----------
Length of 5' end seq. 667
3' end seq. ID VFA268Z
3' end seq.
>VFA268Z.Seq
----------GATTATCTTGATGATGAATTCATTAATTCAATTCCANCTGCATTTGATTG
GAGAACTAGAGGTGCTGTTACACCTGTAAAAAATCAAGGTCAATGTGGTAGTTGTTGGTC
ATTTTCAACTACTGGTAATGTTGAGGGACAACATTTCATTAGTCAGAATAAATTAGTTTC
ATTATCAGAGCAAAACTTGGTAGATTGTGATCATGAGTGTATGGAATATGAAGGTGAACA
AGCTTGTGATGAGGGTTGTAATGGTGGTCTTCAACCAAATGCATATAATTATATCATTAA
AAATGGTGGAATTCAAACAGAATCTTCATATCCTTACACTGCTGAAACAGGTACACAATG
TAACTTTAACTCTGCCAATATTGGTGCAAAGATTTCCAATTTTACAATGATCCCAAAGAA
TGAAACTGTAATGGCTGGGTACATCGTTAGTACTGGACCACTCGCAATTGCTGCTGATGC
TGTTGAGTGGCAATTTTATATTGGTGGTGTATTTGATATTCCATGTAATCCAAATTCACT
TGATCATGGTATTTTAATTGTTGGTTACTCTGCTAAAAATACAATTTTCCGTAAAAATAT
GCCATATTGGATTGTAAAGAATTCTTGGGGTGCAGATTGGGGAGAACAAGGATACATTTA
TTTAAGAAGAGGAAAGAATACATGTGG
Length of 3' end seq. 677
Connected seq. ID VFA268P
Connected seq.
>VFA268P.Seq
ATATTATATATGAAACATTAAAAAAATGAAAGTTATATTATTATTTGTTTTAGCTGTTTT
TACTGTTTTTGTTTCAAGTAGAGGAATTCCATTAGAAGAACAAAGTCAATTCCTTGAATT
TCAAGATAAATTCAATAAAAAATATTCACATGAAGAATATTTGGAAAGATTTGAAATTTT
TAAAAGCAATTTAGGAAAAATTGAAGAATTAAATCTAATAGCCATTAATCACAAAGCTGA
TACTAAATTTGGTGTAAACAAGTTTGCAGATCTTTCCAGTGACGAATTTAAAAATTATTA
TTTAAATAATAAGGAAGCAATATTCACTGATGACCTTCCAGTTGCTGATTATCTTGATGA
TGAATTCATTAATTCAATTCCAACTGCATTTGATTGGAGAACTAGAGGTGCTGTTACACC
TGTAAAAAATCAAGGTCAATGTGGTAGTTGTTGGTCATTTTCAACTACTGGTAATGTTGA
GGGACAACATTTCATTAGTCAGAATAAATTAGTTTCATTATCAGAGCAAAACTTGGTAGA
TTGTGATCATGAGTGTATGGAATATGAAGGTGAACAAGCTTGTGATGAGGGTTGTAATGG
TGGTCTTCAACCAAATGCATATAATTATATCATTAAAAATGGTGGAATTCAAACAGAATC
TTCATAT----------GATTATCTTGATGATGAATTCATTAATTCAATTCCANCTGCAT
TTGATTGGAGAACTAGAGGTGCTGTTACACCTGTAAAAAATCAAGGTCAATGTGGTAGTT
GTTGGTCATTTTCAACTACTGGTAATGTTGAGGGACAACATTTCATTAGTCAGAATAAAT
TAGTTTCATTATCAGAGCAAAACTTGGTAGATTGTGATCATGAGTGTATGGAATATGAAG
GTGAACAAGCTTGTGATGAGGGTTGTAATGGTGGTCTTCAACCAAATGCATATAATTATA
TCATTAAAAATGGTGGAATTCAAACAGAATCTTCATATCCTTACACTGCTGAAACAGGTA
CACAATGTAACTTTAACTCTGCCAATATTGGTGCAAAGATTTCCAATTTTACAATGATCC
CAAAGAATGAAACTGTAATGGCTGGGTACATCGTTAGTACTGGACCACTCGCAATTGCTG
CTGATGCTGTTGAGTGGCAATTTTATATTGGTGGTGTATTTGATATTCCATGTAATCCAA
ATTCACTTGATCATGGTATTTTAATTGTTGGTTACTCTGCTAAAAATACAATTTTCCGTA
AAAATATGCCATATTGGATTGTAAAGAATTCTTGGGGTGCAGATTGGGGAGAACAAGGAT
ACATTTATTTAAGAAGAGGAAAGAATACATGTGG
Length of connected seq. 1344
Full length Seq ID VFA268E
Full length Seq.
>VFA268E.Seq
ATATTATATATGAAACATTAAAAAAATGAAAGTTATATTATTATTTGTTTTAGCTGTTTT
TACTGTTTTTGTTTCAAGTAGAGGAATTCCATTAGAAGAACAAAGTCAATTCCTTGAATT
TCAAGATAAATTCAATAAAAAATATTCACATGAAGAATATTTGGAAAGATTTGAAATTTT
TAAAAGCAATTTAGGAAAAATTGAAGAATTAAATCTAATAGCCATTAATCACAAAGCTGA
TACTAAATTTGGTGTAAACAAGTTTGCAGATCTTTCCAGTGACGAATTTAAAAATTATTA
TTTAAATAATAAGGAAGCAATATTCACTGATGACCTTCCAGTTGCTGATTATCTTGATGA
TGAATTCATTAATTCAATTCCAACTGCATTTGATTGGAGAACTAGAGGTGCTGTTACACC
TGTAAAAAATCAAGGTCAATGTGGTAGTTGTTGGTCATTTTCAACTACTGGTAATGTTGA
GGGACAACATTTCATTAGTCAGAATAAATTAGTTTCATTATCAGAGCAAAACTTGGTAGA
TTGTGATCATGAGTGTATGGAATATGAAGGTGAACAAGCTTGTGATGAGGGTTGTAATGG
TGGTCTTCAACCAAATGCATATAATTATATCATTAAAAATGGTGGAATTCAAACAGAATC
TTCATATCCTTACACTGCTGAAACAGGTACACAATGTAACTTTAACTCTGCCAATATTGG
TGCAAAGATTTCCAATTTTACAATGATCCCAAAGAATGAAACTGTAATGGCTGGGTACAT
CGTTAGTACTGGACCACTCGCAATTGCTGCTGATGCTGTTGAGTGGCAATTTTATATTGG
TGGTGTATTTGATATTCCATGTAATCCAAATTCACTTGATCATGGTATTTTAATTGTTGG
TTACTCTGCTAAAAATACAATTTTCCGTAAAAATATGCCATATTGGATTGTAAAGAATTC
TTGGGGTGCAGATTGGGGAGAACAAGGATACATTTATTTAAGAAGAGGAAAGAATACATG
TGG
Length of full length seq. 1023