VFA257 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VFA257
Library	VF (Link to library)
Clone ID	VFA257 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U15842-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VF/VFA2-C/VFA257Q.Seq.d/
Representative seq. ID	VFA257E (Link to Original site)
Representative DNA sequence	>VFA257 (VFA257Q) /CSM/VF/VFA2-C/VFA257Q.Seq.d/ ATTATTTTATAAAACTACAAACTATACAAATACGAATATTTTAAGCATTAGAAATATGTC AACAGAAAAAATACAAAAAGTTGTTATCATTGGTTCAGGTCCAGCTGGTCACACTGCTGG TATCTATGCCGGTAGAGCCAGATTAGAACCATTGATGTTCGAAGGTTTTATGGCAGGTGG TGTTGCTGCTGGTGGTCAATTAACTACTACAACTGAAATTGAAAATTTCCCAGGTTTCCC AATTGATATTTCAGGATCAGAATTAATGGATAAAATGAGAGAACAAAATATTAAATGTGG AACTACAATCGAAACTAAAACCATTTCAAAGGTTGATCTTAAACAAAGACCATTCACAAT TTATGTAGAAGATGAAGAAGATAAACCAATTAAAGCACAATCAATTATCATTGCAACTGG TGCAACTGCAAAGAGAATGGGTGTACCAGGTGAAACAGAATTTTGGAGTAAAGGTGTTAG TGCATGTGCAGTTTGTGATGGTGCTTTACCAATCTATAGAAATAAACATTTAGTTGTTGT TGGTGGTGGTGATACTGCTGCTGAAGAGGCAACCTTTTTAACTCATTTCGCCTCAAAAGT TACTTTATTGGTCCGTCGTAATGTTATGCGTGCCTCAAAAGCAATGCAACAAAAAGTTTT CTCTAACCCAAAGATCGAAGTTCTTTGGGATACCACTTTGGTCGAAATCAAAGGTGAAAA ATCCGTTACCTCTGTTGGTATTTACAACTCTGAAACTAAAGTAAGCTCAAATCTCGACGC TCAAGGTTTATTCTATGCCATTGGTCACACACCAAATTCTGCCTTCTTAAATGGTCAACT CAATACCGATGAAACTGGTTACATCATCACTCAACCAGGTTCCACCAAAACAAACGTTGA AGGTGTTTTCGCTTGTGGTGATGTTCAAGATAAAGTCTACAGACAAGCTATCACCGCCGC T
sequence update	2001. 6. 9
Translated Amino Acid sequence	LFYKTTNYTNTNILSIRNMSTEKIQKVVIIGSGPAGHTAGIYAGRARLEPLMFEGFMAGG VAAGGQLTTTTEIENFPGFPIDISGSELMDKMREQNIKCGTTIETKTISKVDLKQRPFTI YVEDEEDKPIKAQSIIIATGATAKRMGVPGETEFWSKGVSACAVCDGALPIYRNKHLVVV GGGDTAAEEATFLTHFASKVTLLVRRNVMRASKAMQQKVFSNPKIEVLWDTTLVEIKGEK SVTSVGIYNSETKVSSNLDAQGLFYAIGHTPNSAFLNGQLNTDETGYIITQPGSTKTNVE GVFACGDVQDKVYRQAITAA
Translated Amino Acid sequence (All Frames)	Frame A: iilnyklykyeyfkhkyvnrkntkscyhwfrsswshcwylcrsqirtidvrrfygrw cccwwsinyynnkfprfpnyfriringnertkymwnynrnnhfkgstktihn lcrrrrtnstinyhcnwcnckengctrnrilerccmcslwcftnlktfscc wwwyccrgnlfnsfrlksyfigpscyaclksnatksflpkdrsslgyhfgrnqrk irylcwylqlnsklksrrsrfilchwshtkfcllkwstqyrnwlhhhstrfhqnkr* rcfrlwcsrslqtsyhrr Frame B: LFYKTTNYTNTNILSIRNMSTEKIQKVVIIGSGPAGHTAGIYAGRARLEPLMFEGFMAGG VAAGGQLTTTTEIENFPGFPIDISGSELMDKMREQNIKCGTTIETKTISKVDLKQRPFTI YVEDEEDKPIKAQSIIIATGATAKRMGVPGETEFWSKGVSACAVCDGALPIYRNKHLVVV GGGDTAAEEATFLTHFASKVTLLVRRNVMRASKAMQQKVFSNPKIEVLWDTTLVEIKGEK SVTSVGIYNSETKVSSNLDAQGLFYAIGHTPNSAFLNGQLNTDETGYIITQPGSTKTNVE GVFACGDVQDKVYRQAITAA Frame C: yfiklqtiqirifaleicqqkkykkllslvqvqlvtllvsmpvepdnhcskvlwqvv lllvvnllqlklkisqvsqlifqdqnwikenkilnvelqsklkpfqrlilnkdhsqf mkmkkinqlkhnqlslqlvqlqrewvyqvkqnfgvkvlvhvqfvmvlyqsieinilll vvvilllkrqpflispqkllywsvvmlcvpqkqcnkkfsltqrskffgiplwskskvkn plpllvfttlklkaqistlkvysmplvthqilps*mvnsipmklvtsslnqvppkqtlk vfslvvmfkikstdklspp
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VFA257 (VFA257Q) /CSM/VF/VFA2-C/VFA257Q.Seq.d/ 1905 0.0 VFF579 (VFF579Q) /CSM/VF/VFF5-D/VFF579Q.Seq.d/ 1883 0.0 VFA664 (VFA664Q) /CSM/VF/VFA6-C/VFA664Q.Seq.d/ 1861 0.0 SSC329 (SSC329Q) /CSM/SS/SSC3-B/SSC329Q.Seq.d/ 1715 0.0 SSF790 (SSF790Q) /CSM/SS/SSF7-D/SSF790Q.Seq.d/ 1221 0.0 SLE768 (SLE768Q) /CSM/SL/SLE7-C/SLE768Q.Seq.d/ 1181 0.0 VFL355 (VFL355Q) /CSM/VF/VFL3-C/VFL355Q.Seq.d/ 1154 0.0 VFL421 (VFL421Q) /CSM/VF/VFL4-A/VFL421Q.Seq.d/ 1152 0.0 VFF684 (VFF684Q) /CSM/VF/VFF6-D/VFF684Q.Seq.d/ 1148 0.0 VFC363 (VFC363Q) /CSM/VF/VFC3-C/VFC363Q.Seq.d/ 1098 0.0
own update	2001.11.27
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AX488837\|AX488837.1 Sequence 6137 from Patent WO02053728. 113 6e-32 4 AL425573\|AL425573.1 clone BA0AB006F11 of library BA0AB from strain CLIB 210 of Kluyveromyces lactis. 84 1e-22 4 AL426620\|AL426620.1 clone BA0AB014A04 of library BA0AB from strain CLIB 210 of Kluyveromyces lactis. 84 8e-20 3 U10274\|U10274.1 Saccharomyces cerevisiae thioredoxin reductase (NADPH) gene, complete cds. 46 3e-11 6 AL427352\|AL427352.1 clone BA0AB018F07 of library BA0AB from strain CLIB 210 of Kluyveromyces lactis. 38 3e-09 5 BQ863331\|BQ863331.1 QGC23J12.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC23J12, mRNA sequence. 46 7e-09 3 BD021847\|BD021847.1 Thioredoxin composition stable in solution and process for producing the same. 46 4e-08 5 BQ849761\|BQ849761.1 QGB10M03.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB10M03, mRNA sequence. 46 2e-06 2 U28372\|U28372.1 Saccharomyces cerevisiae chromosome IV cosmid 9476. 46 3e-06 6 U63713\|U63713.1 Schizosaccharomyces pombe thioredoxin reductase gene, complete cds. 40 1e-05 3
dna update	2003. 8.16
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q54UU8) RecName: Full=Thioredoxin reductase; EC=1.8.1.9; 598 e-170 AE016823_1431(AE016823\|pid:none) Leptospira interrogans serovar ... 371 e-101 FM992692_250(FM992692\|pid:none) Candida dubliniensis CD36 chromo... 363 6e-99 CP000499_327(CP000499\|pid:none) Pichia stipitis CBS 6054 chromos... 362 1e-98 AG1898(AG1898) thioredoxin reductase [imported] - Nostoc sp. (st... 355 2e-96 CR382139_359(CR382139\|pid:none) Debaryomyces hansenii strain CBS... 353 4e-96 (Q6BIS1) RecName: Full=Thioredoxin reductase; EC=1.8.1.9; 353 4e-96 (Q6FR39) RecName: Full=Thioredoxin reductase; EC=1.8.1.... 353 5e-96 (P29509) RecName: Full=Thioredoxin reductase 1; EC=1.8.... 352 8e-96 AM396558_1(AM396558\|pid:none) Emericella nidulans mRNA for thior... 352 1e-95
protein update	2009. 7. 9
PSORT	psg: 0.78 gvh: 0.43 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.43 mip: 0.09 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 56.0 %: mitochondrial 28.0 %: nuclear 8.0 %: cytoplasmic 4.0 %: cytoskeletal 4.0 %: peroxisomal >> prediction for VFA257 is mit
5' end seq. ID	VFA257F
5' end seq.	>VFA257F.Seq ATTATTTTATAAAACTACAAACTATACAAATACGAATATTTTAAGCATTAGAAATATGTC AACAGAAAAAATACAAAAAGTTGTTATCATTGGTTCAGGTCCAGCTGGTCACACTGCTGG TATCTATGCCGGTAGAGCCAGATTAGAACCATTGATGTTCGAAGGTTTTATGGCAGGTGG TGTTGCTGCTGGTGGTCAATTAACTACTACAACTGAAATTGAAAATTTCCCAGGTTTCCC AATTGATATTTCAGGATCAGAATTAATGGATAAAATGAGAGAACAAAATATTAAATGTGG AACTACAATCGAAACTAAAACCATTTCAAAGGTTGATCTTAAACAAAGACCATTCACAAT TTATGTAGAAGATGAAGAAGATAAACCAATTAAAGCACAATCAATTATCATTGCAACTGG TGCAACTGCAAAGAGAATGGGTGTACCAGGTGAAACAGAATTTTGGAGTAAAGGTGTTAG TGCATGTGCAGTTTGTGATGGTGCTTTACCAATCTATAGAAATAAACATTTAGTTGTTGT TGGTGGTGGTGATACTGCTGCTGA----------
Length of 5' end seq.	564
3' end seq. ID	VFA257Z
3' end seq.	>VFA257Z.Seq ----------CAAAGACCATTCACAATTTATGTAGAAGATGAAGAAGATAAACCAATTAA AGCACAATCAATTATCATTGCAACTGGTGCAACTGCAAAGAGAATGGGTGTACCAGGTGA AACAGAATTTTGGAGTAAAGGTGTTAGTGCATGTGCAGTTTGTGATGGTGCTTTACCAAT CTATAGAAATAAACATTTAGTTGTTGTTGGTGGTGGTGATACTGCTGCTGAAGAGGCAAC CTTTTTAACTCATTTCGCCTCAAAAGTTACTTTATTGGTCCGTCGTAATGTTATGCGTGC CTCAAAAGCAATGCAACAAAAAGTTTTCTCTAACCCAAAGATCGAAGTTCTTTGGGATAC CACTTTGGTCGAAATCAAAGGTGAAAAATCCGTTACCTCTGTTGGTATTTACAACTCTGA AACTAAAGTAAGCTCAAATCTCGACGCTCAAGGTTTATTCTATGCCATTGGTCACACACC AAATTCTGCCTTCTTAAATGGTCAACTCAATACCGATGAAACTGGTTACATCATCACTCA ACCAGGTTCCACCAAAACAAACGTTGAAGGTGTTTTCGCTTGTGGTGATGTTCAAGATAA AGTCTACAGACAAGCTATCACCGCCGCT
Length of 3' end seq.	618
Connected seq. ID	VFA257P
Connected seq.	>VFA257P.Seq ATTATTTTATAAAACTACAAACTATACAAATACGAATATTTTAAGCATTAGAAATATGTC AACAGAAAAAATACAAAAAGTTGTTATCATTGGTTCAGGTCCAGCTGGTCACACTGCTGG TATCTATGCCGGTAGAGCCAGATTAGAACCATTGATGTTCGAAGGTTTTATGGCAGGTGG TGTTGCTGCTGGTGGTCAATTAACTACTACAACTGAAATTGAAAATTTCCCAGGTTTCCC AATTGATATTTCAGGATCAGAATTAATGGATAAAATGAGAGAACAAAATATTAAATGTGG AACTACAATCGAAACTAAAACCATTTCAAAGGTTGATCTTAAACAAAGACCATTCACAAT TTATGTAGAAGATGAAGAAGATAAACCAATTAAAGCACAATCAATTATCATTGCAACTGG TGCAACTGCAAAGAGAATGGGTGTACCAGGTGAAACAGAATTTTGGAGTAAAGGTGTTAG TGCATGTGCAGTTTGTGATGGTGCTTTACCAATCTATAGAAATAAACATTTAGTTGTTGT TGGTGGTGGTGATACTGCTGCTGA----------CAAAGACCATTCACAATTTATGTAGA AGATGAAGAAGATAAACCAATTAAAGCACAATCAATTATCATTGCAACTGGTGCAACTGC AAAGAGAATGGGTGTACCAGGTGAAACAGAATTTTGGAGTAAAGGTGTTAGTGCATGTGC AGTTTGTGATGGTGCTTTACCAATCTATAGAAATAAACATTTAGTTGTTGTTGGTGGTGG TGATACTGCTGCTGAAGAGGCAACCTTTTTAACTCATTTCGCCTCAAAAGTTACTTTATT GGTCCGTCGTAATGTTATGCGTGCCTCAAAAGCAATGCAACAAAAAGTTTTCTCTAACCC AAAGATCGAAGTTCTTTGGGATACCACTTTGGTCGAAATCAAAGGTGAAAAATCCGTTAC CTCTGTTGGTATTTACAACTCTGAAACTAAAGTAAGCTCAAATCTCGACGCTCAAGGTTT ATTCTATGCCATTGGTCACACACCAAATTCTGCCTTCTTAAATGGTCAACTCAATACCGA TGAAACTGGTTACATCATCACTCAACCAGGTTCCACCAAAACAAACGTTGAAGGTGTTTT CGCTTGTGGTGATGTTCAAGATAAAGTCTACAGACAAGCTATCACCGCCGCT
Length of connected seq.	1182
Full length Seq ID	VFA257E
Full length Seq.	>VFA257E.Seq ATTATTTTATAAAACTACAAACTATACAAATACGAATATTTTAAGCATTAGAAATATGTC AACAGAAAAAATACAAAAAGTTGTTATCATTGGTTCAGGTCCAGCTGGTCACACTGCTGG TATCTATGCCGGTAGAGCCAGATTAGAACCATTGATGTTCGAAGGTTTTATGGCAGGTGG TGTTGCTGCTGGTGGTCAATTAACTACTACAACTGAAATTGAAAATTTCCCAGGTTTCCC AATTGATATTTCAGGATCAGAATTAATGGATAAAATGAGAGAACAAAATATTAAATGTGG AACTACAATCGAAACTAAAACCATTTCAAAGGTTGATCTTAAACAAAGACCATTCACAAT TTATGTAGAAGATGAAGAAGATAAACCAATTAAAGCACAATCAATTATCATTGCAACTGG TGCAACTGCAAAGAGAATGGGTGTACCAGGTGAAACAGAATTTTGGAGTAAAGGTGTTAG TGCATGTGCAGTTTGTGATGGTGCTTTACCAATCTATAGAAATAAACATTTAGTTGTTGT TGGTGGTGGTGATACTGCTGCTGAAGAGGCAACCTTTTTAACTCATTTCGCCTCAAAAGT TACTTTATTGGTCCGTCGTAATGTTATGCGTGCCTCAAAAGCAATGCAACAAAAAGTTTT CTCTAACCCAAAGATCGAAGTTCTTTGGGATACCACTTTGGTCGAAATCAAAGGTGAAAA ATCCGTTACCTCTGTTGGTATTTACAACTCTGAAACTAAAGTAAGCTCAAATCTCGACGC TCAAGGTTTATTCTATGCCATTGGTCACACACCAAATTCTGCCTTCTTAAATGGTCAACT CAATACCGATGAAACTGGTTACATCATCACTCAACCAGGTTCCACCAAAACAAACGTTGA AGGTGTTTTCGCTTGTGGTGATGTTCAAGATAAAGTCTACAGACAAGCTATCACCGCCGC T
Length of full length seq.	961

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas