VFA254
Library VF
(Link to library)
Clone ID VFA254
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16239-1
Original site URL
Representative seq. ID VFA254P
(Link to Original site)
Representative DNA sequence
>VFA254 (VFA254Q) /CSM/VF/VFA2-C/VFA254Q.Seq.d/
ATAAAAGATTGGTAAAAAACCTGTCAAAATTATTAATTTTATTGTTATTATCATTGGTTG
CTTCAATCTTTTCAACTCCATTGGATGATTATGTCAATGCTCCTGACGATACCTACAAGT
GGACATTAAATAATACAATTGAATATGAAACTTTTACAGGTTACATTTTAGAGTTGACAT
CACAAACATGGATGGCTGAAAAATCAGATTGGCCAGTTTGGAAACATTGGGTTTCAATTT
GTGTACCAAAAGGTGTTACAACTACAACTACATTTATATATGTTGATGGTGGTTCAAATG
ATAACTGGAAAGTACCAGGTTCAATGGATCAAACAATTGAAATTGTTTGTCTTTCATCTG
GTTCAGTTAGTGTTGGTTTAACTCAAATTCCAAATCAACCAATCATTTTCAATAATGATG
GTGTTCAAAGATTTGAAGATGATCTCGTTGCTTATACTTGGAGACAATTTTTAGGAAATA
CAAGTGAACCACTTTGGTTAGCAAGATTACCAATGACTAAAXXXXXXXXXXATCTTAGAA
TCGTACCAAATGCTGAACACTCTTTAATGGGTCATCAAATTGATATCATTTTATCGGATT
GTTACATTTGTTAGATTATTAATTACAAATCAACCACGTCCAACTTTTACATGGGATATT
ACCTACTCTGAAGATTTAAATAGTGGTACAATCGTTTTAACAGTACCAGAAGGTGGTATC
ATTCCATACAAAGTTAAAGTTTGGACAGCAGTAACTGAAAGTACAACCAGAAGAGATTTC
CGTATCATCACATGTATGGATATCACCAAATGTATTCAATTCATCATTTGGGATCCTTCT
GATATTACTCCAACTTCCACTGGTGTATATTCAATCACTTTATCAAAACCAGATGCTGGT
TGGAGAGCTTTCTTCCTTGAAGCTGAATATTTATATGCTAAAAATTCAATCGATGATGAA
TATACTCTTAAATTCACTTCTGAAGTTGCCATTGTACCAAATACTTTACCATTCGGTTCA
TGCTCTTAATATAATGCATGGGTGANGAGTCAAGGNATAGTGCNAGTTCAACTGCAACTT
sequence update 2001. 6. 1
Translated Amino Acid sequence
KRLVKNLSKLLILLLLSLVASIFSTPLDDYVNAPDDTYKWTLNNTIEYETFTGYILELTS
QTWMAEKSDWPVWKHWVSICVPKGVTTTTTFIYVDGGSNDNWKVPGSMDQTIEIVCLSSG
SVSVGLTQIPNQPIIFNNDGVQRFEDDLVAYTWRQFLGNTSEPLWLARLPMTK---

---LRIVPNAEHSLMGHQIDIILSDCYIC*iinyksttsnfymgyyll*rfk*wynrfns
trrwyhsiqs*sldssn*kynqkrfpyhhmygyhqmysihhlgsf*yysnfhwcifnhfi
ktrcwlesflp*s*ific*kfnr**iys*ihf*schctkyftirfmlli*cmgxesrxsa
sstat


Translated Amino Acid sequence (All Frames)
Frame A:
ikdw*ktcqny*fycyyhwllqsfqlhwmimsmlltiptsgh*iiqlnmkllqvtf*s*h
hkhgwlknqigqfgnigfqfvyqkvlqlqlhlymlmvvqmitgkyqvqwikqlklfvfhl
vqlvlv*lkfqinqsfsimmvfkdlkmisllilgdnf*eiqvnhfg*qdyq*l---

---ilesyqmlntl*wviklisfyrivtfvrllitnqprptftwditysedlnsgtivlt
vpeggiipykvkvwtavtesttrrdfriitcmditkciqfiiwdpsditptstgvysitl
skpdagwraffleaeylyaknsiddeytlkftsevaivpntlpfgscs*ynawvxsqgiv
xvqlql

Frame B:
*kigkkpvkiinfiviiigcfnlfnsig*lcqcs*rylqvdik*yn*i*nfyrlhfrvdi
tnmdg*kirlasletlgfnlctkrcynynyiyic*wwfk**lestrfngsnn*nclsfiw
fs*cwfnsnskstnhfq**wcski*r*srclyletifrkyk*ttlvskitnd*---

---s*nrtkc*tlfngssn*yhfigllhlldy*lqinhvqllhgilptlki*ivvqsf*q
yqkvvsfhtklkfgqq*lkvqpeeisvsshvwispnvfnssfgillillqlplvyiqsly
qnqmlvgelsslklniymlkiqsmmnillnsllklplyqilyhsvhalnimhg*xvkx*c
xfncn

Frame C:
KRLVKNLSKLLILLLLSLVASIFSTPLDDYVNAPDDTYKWTLNNTIEYETFTGYILELTS
QTWMAEKSDWPVWKHWVSICVPKGVTTTTTFIYVDGGSNDNWKVPGSMDQTIEIVCLSSG
SVSVGLTQIPNQPIIFNNDGVQRFEDDLVAYTWRQFLGNTSEPLWLARLPMTK---

---LRIVPNAEHSLMGHQIDIILSDCYIC*iinyksttsnfymgyyll*rfk*wynrfns
trrwyhsiqs*sldssn*kynqkrfpyhhmygyhqmysihhlgsf*yysnfhwcifnhfi
ktrcwlesflp*s*ific*kfnr**iys*ihf*schctkyftirfmlli*cmgxesrxsa
sstat

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFA254 (VFA254Q) /CSM/VF/VFA2-C/VFA254Q.Seq.d/ 2064 0.0
VFO540 (VFO540Q) /CSM/VF/VFO5-B/VFO540Q.Seq.d/ 1019 0.0
VFN732 (VFN732Q) /CSM/VF/VFN7-B/VFN732Q.Seq.d/ 1019 0.0
VFN176 (VFN176Q) /CSM/VF/VFN1-D/VFN176Q.Seq.d/ 1019 0.0
VFL666 (VFL666Q) /CSM/VF/VFL6-C/VFL666Q.Seq.d/ 1019 0.0
VFL320 (VFL320Q) /CSM/VF/VFL3-A/VFL320Q.Seq.d/ 1019 0.0
VFL194 (VFL194Q) /CSM/VF/VFL1-D/VFL194Q.Seq.d/ 1019 0.0
VFK341 (VFK341Q) /CSM/VF/VFK3-B/VFK341Q.Seq.d/ 1019 0.0
VFI702 (VFI702Q) /CSM/VF/VFI7-A/VFI702Q.Seq.d/ 1019 0.0
VFI304 (VFI304Q) /CSM/VF/VFI3-A/VFI304Q.Seq.d/ 1019 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116989|AC116989.2 Dictyostelium discoideum chromosome 2 map complement(3527391-3470188) strain AX4, complete sequence. 38 0.003 6
AZ292725|AZ292725.1 RPCI-23-148A16.TV RPCI-23 Mus musculus genomic clone RPCI-23-148A16 , DNA sequence. 38 0.17 2
AL731608|AL731608.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0082E08. 38 0.56 4
Z68213|Z68213.1 Caenorhabditis elegans cosmid C01F6. 44 0.83 2
AW976217|AW976217.1 EST388326 MAGE resequences, MAGN Homo sapiens cDNA, mRNA sequence. 46 0.91 1
BX147732|BX147732.1 Danio rerio genomic clone DKEY-106C4, genomic survey sequence. 46 0.91 1
AC083804|AC083804.13 Homo sapiens 3 BAC RP11-269P9 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 46 0.91 1
BX255970|BX255970.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-136G2. 46 0.91 1
AZ202314|AZ202314.1 SP_0056_A2_F09_SP6E Strongylocentrotus purpuratus, purple sea urchin, sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=56 Col=18 Row=K, DNA sequence. 46 0.91 1
BX088589|BX088589.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-27E7. 42 1.2 2
dna update 2003. 8.16
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q5XM24) RecName: Full=Autocrine proliferation repressor; AltNam... 308 7e-87
AC116987_4(AC116987|pid:none) Dictyostelium discoideum chromosom... 129 2e-28
CP000473_2389(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 110 6e-23
CP000127_1294(CP000127|pid:none) Nitrosococcus oceani ATCC 19707... 64 1e-08
AE015451_4974(AE015451|pid:none) Pseudomonas putida KT2440 compl... 53 2e-05
CP000712_4860(CP000712|pid:none) Pseudomonas putida F1, complete... 52 3e-05
CU694393_139(CU694393|pid:none) Ralstonia solanacearum strain Mo... 51 8e-05
AE003849_1380(AE003849|pid:none) Xylella fastidiosa 9a5c, comple... 51 8e-05
AE008922_2895(AE008922|pid:none) Xanthomonas campestris pv. camp... 49 2e-04
AM920689_1230(AM920689|pid:none) Xanthomonas campestris pv. camp... 49 3e-04
protein update 2009. 6.16
PSORT

psg: 0.97 gvh: 0.90 alm: 0.39 top: 0.00 tms: 0.00 mit: 0.48 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 1.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: extracellular, including cell wall
20.0 %: plasma membrane
12.0 %: endoplasmic reticulum
8.0 %: cytoplasmic
8.0 %: Golgi
8.0 %: vesicles of secretory system
4.0 %: vacuolar
4.0 %: nuclear

>> prediction for VFA254 is exc

5' end seq. ID VFA254F
5' end seq.
>VFA254F.Seq
ATAAAAGATTGGTAAAAAACCTGTCAAAATTATTAATTTTATTGTTATTATCATTGGTTG
CTTCAATCTTTTCAACTCCATTGGATGATTATGTCAATGCTCCTGACGATACCTACAAGT
GGACATTAAATAATACAATTGAATATGAAACTTTTACAGGTTACATTTTAGAGTTGACAT
CACAAACATGGATGGCTGAAAAATCAGATTGGCCAGTTTGGAAACATTGGGTTTCAATTT
GTGTACCAAAAGGTGTTACAACTACAACTACATTTATATATGTTGATGGTGGTTCAAATG
ATAACTGGAAAGTACCAGGTTCAATGGATCAAACAATTGAAATTGTTTGTCTTTCATCTG
GTTCAGTTAGTGTTGGTTTAACTCAAATTCCAAATCAACCAATCATTTTCAATAATGATG
GTGTTCAAAGATTTGAAGATGATCTCGTTGCTTATACTTGGAGACAATTTTTAGGAAATA
CAAGTGAACCACTTTGGTTAGCAAGATTACCAATGACTAAA----------
Length of 5' end seq. 521
3' end seq. ID VFA254Z
3' end seq.
>VFA254Z.Seq
----------ATCTTAGAATCGTACCAAATGCTGAACACTCTTTAATGGGTCATCAAATT
GATATCATTTTATCGGATTGTTACATTTGTTAGATTATTAATTACAAATCAACCACGTCC
AACTTTTACATGGGATATTACCTACTCTGAAGATTTAAATAGTGGTACAATCGTTTTAAC
AGTACCAGAAGGTGGTATCATTCCATACAAAGTTAAAGTTTGGACAGCAGTAACTGAAAG
TACAACCAGAAGAGATTTCCGTATCATCACATGTATGGATATCACCAAATGTATTCAATT
CATCATTTGGGATCCTTCTGATATTACTCCAACTTCCACTGGTGTATATTCAATCACTTT
ATCAAAACCAGATGCTGGTTGGAGAGCTTTCTTCCTTGAAGCTGAATATTTATATGCTAA
AAATTCAATCGATGATGAATATACTCTTAAATTCACTTCTGAAGTTGCCATTGTACCAAA
TACTTTACCATTCGGTTCATGCTCTTAATATAATGCATGGGTGANGAGTCAAGGNATAGT
GCNAGTTCAACTGCAACTT
Length of 3' end seq. 549
Connected seq. ID VFA254P
Connected seq.
>VFA254P.Seq
ATAAAAGATTGGTAAAAAACCTGTCAAAATTATTAATTTTATTGTTATTATCATTGGTTG
CTTCAATCTTTTCAACTCCATTGGATGATTATGTCAATGCTCCTGACGATACCTACAAGT
GGACATTAAATAATACAATTGAATATGAAACTTTTACAGGTTACATTTTAGAGTTGACAT
CACAAACATGGATGGCTGAAAAATCAGATTGGCCAGTTTGGAAACATTGGGTTTCAATTT
GTGTACCAAAAGGTGTTACAACTACAACTACATTTATATATGTTGATGGTGGTTCAAATG
ATAACTGGAAAGTACCAGGTTCAATGGATCAAACAATTGAAATTGTTTGTCTTTCATCTG
GTTCAGTTAGTGTTGGTTTAACTCAAATTCCAAATCAACCAATCATTTTCAATAATGATG
GTGTTCAAAGATTTGAAGATGATCTCGTTGCTTATACTTGGAGACAATTTTTAGGAAATA
CAAGTGAACCACTTTGGTTAGCAAGATTACCAATGACTAAA----------ATCTTAGAA
TCGTACCAAATGCTGAACACTCTTTAATGGGTCATCAAATTGATATCATTTTATCGGATT
GTTACATTTGTTAGATTATTAATTACAAATCAACCACGTCCAACTTTTACATGGGATATT
ACCTACTCTGAAGATTTAAATAGTGGTACAATCGTTTTAACAGTACCAGAAGGTGGTATC
ATTCCATACAAAGTTAAAGTTTGGACAGCAGTAACTGAAAGTACAACCAGAAGAGATTTC
CGTATCATCACATGTATGGATATCACCAAATGTATTCAATTCATCATTTGGGATCCTTCT
GATATTACTCCAACTTCCACTGGTGTATATTCAATCACTTTATCAAAACCAGATGCTGGT
TGGAGAGCTTTCTTCCTTGAAGCTGAATATTTATATGCTAAAAATTCAATCGATGATGAA
TATACTCTTAAATTCACTTCTGAAGTTGCCATTGTACCAAATACTTTACCATTCGGTTCA
TGCTCTTAATATAATGCATGGGTGANGAGTCAAGGNATAGTGCNAGTTCAACTGCAACTT
Length of connected seq. 1070
Full length Seq ID -
Full length Seq. -
Length of full length seq. -