VFA236
Library VF
(Link to library)
Clone ID VFA236
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16272-1
Original site URL
Representative seq. ID VFA236Z
(Link to Original site)
Representative DNA sequence
>VFA236 (VFA236Q) /CSM/VF/VFA2-B/VFA236Q.Seq.d/
XXXXXXXXXXACTTTGCTGTTGCCAAACTTTGAAAAGACCGTCAACGTCACTGGTGTCTT
TGCCGAAAATGAATTAATCGATGTTATCGGTGTAACCAAAGGTAAAGGTTTCAATGGTGT
CATTAAAAGATGGGGTGTCCGTAAATTACCAAGAAAGACCCATATAGGTTTAAGAAAGGT
TGCCTGTATTGGTGCATGGCATCCATCCCGTGTTAGTACCACCGTCCCAAGAGCTGGTCA
ACTCGGTTACCATCATCGTGT
sequence update 2001. 6. 1
Translated Amino Acid sequence
---LLLPNFEKTVNVTGVFAENELIDVIGVTKGKGFNGVIKRWGVRKLPRKTHIGLRKVA
CIGAWHPSRVSTTVPRAGQLGYHHR


Translated Amino Acid sequence (All Frames)
Frame A:
---lcccqtlkrpstslvslpkmn*smlsv*pkvkvsmvslkdgvsvnyqerpi*v*erl
pvlvhgihpvlvppsqelvnsvtiiv


Frame B:
---favakl*kdrqrhwclcrk*inrcyrcnqr*rfqwch*kmgcp*itkkdpyrfkkgc
lywcmasipc*yhrpkswstrlpssc


Frame C:
---LLLPNFEKTVNVTGVFAENELIDVIGVTKGKGFNGVIKRWGVRKLPRKTHIGLRKVA
CIGAWHPSRVSTTVPRAGQLGYHHR


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFA236 (VFA236Q) /CSM/VF/VFA2-B/VFA236Q.Seq.d/ 498 e-140
VHA485 (VHA485Q) /CSM/VH/VHA4-D/VHA485Q.Seq.d/ 474 e-133
VFO869 (VFO869Q) /CSM/VF/VFO8-C/VFO869Q.Seq.d/ 474 e-133
VFO585 (VFO585Q) /CSM/VF/VFO5-D/VFO585Q.Seq.d/ 474 e-133
VFO546 (VFO546Q) /CSM/VF/VFO5-B/VFO546Q.Seq.d/ 474 e-133
VFO145 (VFO145Q) /CSM/VF/VFO1-B/VFO145Q.Seq.d/ 474 e-133
VFN671 (VFN671Q) /CSM/VF/VFN6-C/VFN671Q.Seq.d/ 474 e-133
VFN470 (VFN470Q) /CSM/VF/VFN4-C/VFN470Q.Seq.d/ 474 e-133
VFN445 (VFN445Q) /CSM/VF/VFN4-B/VFN445Q.Seq.d/ 474 e-133
VFN362 (VFN362Q) /CSM/VF/VFN3-C/VFN362Q.Seq.d/ 474 e-133

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

L08391|L08391.1 Dictyostelium discoideum ribosomal protein (L3) gene, complete cds. 460 e-128 2
AX489150|AX489150.1 Sequence 6450 from Patent WO02053728. 78 3e-13 2
AZ930018|AZ930018.1 479.dil57g06.s1 Saccharomyces kluyveri Saccharomyces kluyveri genomic clone 479.dil57g06.s1, DNA sequence. 54 2e-10 3
BF269274|BF269274.1 GA__Eb0004E01f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0004E01f, mRNA sequence. 50 3e-10 4
BQ596538|BQ596538.1 PfESToab19b04.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:RL3_BOVIN P39872 60S RIBOSOMAL PROTEIN L3. ;, mRNA sequence. 58 5e-10 2
AL424946|AL424946.1 clone BA0AB002D01 of library BA0AB from strain CLIB 210 of Kluyveromyces lactis. 66 3e-09 3
Z74971|Z74971.1 S.cerevisiae chromosome XV reading frame ORF YOR063w. 70 8e-09 2
AI256977|AI256977.1 LP04205.5prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP04205 5prime similar to AF016835: Drosophila melanogaster ribosomal protein L3 (RpL3) mRNA, complete cds, mRNA sequence. 44 1e-07 2
Z70678|Z70678.1 S.cerevisiae chromosome XV DNA, 54.7 kb region. 70 4e-07 3
AE014833|AE014833.1 Plasmodium falciparum 3D7 chromosome 10 section 5 of 7 of the complete sequence. 58 5e-07 3
dna update 2003. 8.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P34113) RecName: Full=60S ribosomal protein L3; &JC4254(JC4254... 163 2e-39
(O16797) RecName: Full=60S ribosomal protein L3; &AE014297_1301... 125 6e-28
BT034517_1(BT034517|pid:none) Zea mays full-length cDNA clone ZM... 125 6e-28
EF144245_1(EF144245|pid:none) Populus trichocarpa clone PX0011_L... 125 6e-28
BT036034_1(BT036034|pid:none) Zea mays full-length cDNA clone ZM... 125 6e-28
DQ241849_1(DQ241849|pid:none) Solanum tuberosum clone 187E04 rib... 125 6e-28
JQ0772(JQ0772) ribosomal protein L3.e (clone ARP2), cytosolic - ... 124 8e-28
AK317561_1(AK317561|pid:none) Arabidopsis thaliana AT1G61580 mRN... 124 8e-28
(P22738) RecName: Full=60S ribosomal protein L3-2; &AC005850_7(... 124 8e-28
AM471157_1(AM471157|pid:none) Vitis vinifera contig VV78X211407.... 124 8e-28
protein update 2009. 6.16
PSORT

psg: 0.86 gvh: 0.36 alm: 0.44 top: 0.40 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.50 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

88.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: nuclear

>> prediction for VFA236 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFA236Z
3' end seq.
>VFA236Z.Seq
----------ACTTTGCTGTTGCCAAACTTTGAAAAGACCGTCAACGTCACTGGTGTCTT
TGCCGAAAATGAATTAATCGATGTTATCGGTGTAACCAAAGGTAAAGGTTTCAATGGTGT
CATTAAAAGATGGGGTGTCCGTAAATTACCAAGAAAGACCCATATAGGTTTAAGAAAGGT
TGCCTGTATTGGTGCATGGCATCCATCCCGTGTTAGTACCACCGTCCCAAGAGCTGGTCA
ACTCGGTTACCATCATCGTGT
Length of 3' end seq. 251
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -