VFA225 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VFA225
Library	VF (Link to library)
Clone ID	VFA225 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16602-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VF/VFA2-B/VFA225Q.Seq.d/
Representative seq. ID	VFA225E (Link to Original site)
Representative DNA sequence	>VFA225 (VFA225Q) /CSM/VF/VFA2-B/VFA225Q.Seq.d/ AGTCTCAGTATTACTTTATCTTTAAATTCTCATACACAACAAGATGTCCGGGGCAGGAAG TAAAAGAAAGAACGTTTTCATTGAAAAAGCTACCAAGCTTTTCACCACTTACGACAAAAT GATCGTCGCCGAAGCTAATTTTGTAGGTTCAAGCCAATTACAAAAGATCANGAAAATCCA TCCGTGGTATCGGTGCCGTTCTCATGGGTAAGAAGACTATGATCCGTAAGGTCATCCGTG ATTTAGCTGATTCTAAACCAGAACTCGATGCCTTAAATACCTACTTAAAACAAAACACCT GTATCATTTTCTGTAAAGATAACATCGCTGAAGTTAAACGTGTTATCAATACTCAACGTG TTGGTGCCCCAGCTAAAGCAGGTGTTTTCGCTCCAAACGATGTTATCATCCCAGCCGGTC CAACTGGTATGGAACCAACCCAAACCTCTTTCCTCCAAGATTTAAAGATTGCCACTAAAA TCAACAGAGGTCAAATCGATATCGTCAATGAAGTCCACATCATTAAAACCGGTCAAAAAG TTGGTGCCTCAGAAGCTACCCTCTTACAAAAATTGAACATCAAACCATTCACCTATGGTT TAGAACCAAAAATCATCTATGATGCTGGTGCCTGTTATTCACCATCTATCTCTGAAGAAG ATTTCATCAACAAATTCAAACAAGGTATTTTCAACATTGCTGCCATCTCCTTGGAAATTG GTTACCCAACCGTTGCTTCAATTCCACATTCAGTCATGAATGCTTTCAAGAATTTATTAG CCATCTCATTCGAAACCTCTTACACTTTCGATGCTGCTGAAAAATTCAAATCAGCCGCTG CTGCTGCCCCAGTTGCTGCCGCTCCATCCGCTGCTGCTCCAGCTGCCGCTGCCAANAAAG TCGTCGTCGAAGAAAAGAAAGAAGAATCAGATGATGATATGGGTATGGGTCTCTTNATTA AGATTTAAANAATAATTTTTTTTTTCAAAAAACATCAAAAAAAAA
sequence update	2001. 6. 9
Translated Amino Acid sequence	sqyyfifkfsyttrcpgqevkertfslkklpsfsplttksspklilVQANYKRSXKSI RGIGAVLMGKKTMIRKVIRDLADSKPELDALNTYLKQNTCIIFCKDNIAEVKRVINTQRV GAPAKAGVFAPNDVIIPAGPTGMEPTQTSFLQDLKIATKINRGQIDIVNEVHIIKTGQKV GASEATLLQKLNIKPFTYGLEPKIIYDAGACYSPSISEEDFINKFKQGIFNIAAISLEIG YPTVASIPHSVMNAFKNLLAISFETSYTFDAAEKFKSAAAAAPVAAAPSAAAPAAAAXKV VVEEKKEESDDDMGMGLXIKI*xiifffkkhqkk
Translated Amino Acid sequence (All Frames)	Frame A: slsitlslnshtqqdvrgrkkkerfhksyqafhhlrqndrrrsfcrfkpitkdxenp svvsvpfswvrrlsvrssvililnqnsmpiptnktpvsfsvkitslklnvlsilnv lvpqlkqvfslqtmlssqpvqlvwnqpkplsskirlplkstevksissmkstslkpvkk lvpqklpsykntsnhspmvnqkssmmlvpvihhlslkkisstnsnkvfstllpspwkl vtqpllqfhiqsmlsriypshskpltlsmllknsnqplllpqllplhplllqlplpxk ssskkrkknqmmiwvwvsxlrfkxfffsknikkk Frame B: vsvllylilihnkmsgagskrknvfiekatklfttydkmivaeanfvgssqlqkixkih pwyrcrshgedydpghpfsftrtrclkyllktkhlyhflrhrstcyqystc wcpssrcfrskrcyhpsrsnwygtnpnlfpprfkdchnqqrsnryrqsphhnrsks wclrsypltkiehqtihlwfrtknhlcwcllftiylrrfhqqiqtryfqhcchllgnw lpnrcfnstfshecfqefishlirnllhfrcckiqisrcccpsccrsirccsscrcqxs rrrrkerrir*ygygslxdlxnnfffqktskk Frame C: sqyyfifkfsyttrcpgqevkertfslkklpsfsplttksspklilVQANYKRSXKSI RGIGAVLMGKKTMIRKVIRDLADSKPELDALNTYLKQNTCIIFCKDNIAEVKRVINTQRV GAPAKAGVFAPNDVIIPAGPTGMEPTQTSFLQDLKIATKINRGQIDIVNEVHIIKTGQKV GASEATLLQKLNIKPFTYGLEPKIIYDAGACYSPSISEEDFINKFKQGIFNIAAISLEIG YPTVASIPHSVMNAFKNLLAISFETSYTFDAAEKFKSAAAAAPVAAAPSAAAPAAAAXKV VVEEKKEESDDDMGMGLXIKI*xiifffkkhqkk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VFA225 (VFA225Q) /CSM/VF/VFA2-B/VFA225Q.Seq.d/ 1643 0.0 VFL888 (VFL888Q) /CSM/VF/VFL8-D/VFL888Q.Seq.d/ 1610 0.0 VFG702 (VFG702Q) /CSM/VF/VFG7-A/VFG702Q.Seq.d/ 1610 0.0 VFF854 (VFF854Q) /CSM/VF/VFF8-C/VFF854Q.Seq.d/ 1610 0.0 VFE158 (VFE158Q) /CSM/VF/VFE1-C/VFE158Q.Seq.d/ 1610 0.0 VFD767 (VFD767Q) /CSM/VF/VFD7-C/VFD767Q.Seq.d/ 1610 0.0 VFB326 (VFB326Q) /CSM/VF/VFB3-B/VFB326Q.Seq.d/ 1610 0.0 VFA871 (VFA871Q) /CSM/VF/VFA8-C/VFA871Q.Seq.d/ 1610 0.0 VFA341 (VFA341Q) /CSM/VF/VFA3-B/VFA341Q.Seq.d/ 1610 0.0 VFF848 (VFF848Q) /CSM/VF/VFF8-B/VFF848Q.Seq.d/ 1608 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N X56194\|X56194.1 D. discoideum mRNA for ribosomal acidic phosphoprotein P0. 1294 0.0 3 CD203589\|CD203589.1 Ls_AM1_10H07_T7 Litomosoides sigmodontis adult male 1 Litomosoides sigmodontis cDNA clone Ls_AM1_10H07 5', mRNA sequence. 54 2e-04 2 AY091201\|AY091201.1 Arabidopsis thaliana putative 60S acidic ribosomal protein (At3g11250) mRNA, complete cds. 44 0.002 2 BI073648\|BI073648.1 kt33c04.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:RLA0_CHICK P47826 60S ACIDIC RIBOSOMAL PROTEIN P0 ;, mRNA sequence. 34 0.003 4 AY056150\|AY056150.1 Arabidopsis thaliana putative 60S acidic ribosomal protein (At3g11250) mRNA, complete cds. 44 0.003 2 BI323869\|BI323869.1 kt46a06.y3 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:RLA0_CAEEL Q93572 60S ACIDIC RIBOSOMAL PROTEIN P0. [1] ;, mRNA sequence. 34 0.003 4 AY087728\|AY087728.1 Arabidopsis thaliana clone 38036 mRNA, complete sequence. 44 0.003 2 BI323537\|BI323537.1 kt72e09.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:RLA0_CAEEL Q93572 60S ACIDIC RIBOSOMAL PROTEIN P0. [1] ;, mRNA sequence. 34 0.003 4 BI450520\|BI450520.1 kt26h09.y3 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:RLA0_CAEEL Q93572 60S ACIDIC RIBOSOMAL PROTEIN P0. [1] ;, mRNA sequence. 34 0.004 4 CD525747\|CD525747.1 kw25e07.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to SW:RLA0_CAEEL Q93572 60S ACIDIC RIBOSOMAL PROTEIN P0. [1] ;, mRNA sequence. 34 0.004 4
dna update	2003. 8.15
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (P22685) RecName: Full=60S acidic ribosomal protein P0; 419 e-134 R5DOP0(S14012) ribosomal protein P0 - slime mold (Dictyostelium ... 419 e-133 AY857422_1(AY857422\|pid:none) Suberites domuncula L10e/P0 mRNA, ... 226 5e-59 EU069460_1(EU069460\|pid:none) Stylophora pistillata 60S acidic r... 223 1e-56 (Q9U3U0) RecName: Full=60S acidic ribosomal protein P0; ... 214 8e-56 AJ457827_1(AJ457827\|pid:none) Bombyx mori mRNA for ribosomal P0 ... 214 3e-55 DQ516397_1(DQ516397\|pid:none) Strongyloides ratti acidic ribosom... 213 3e-55 AY217739_1(AY217739\|pid:none) Toxoplasma gondii ribosomal P prot... 217 6e-55 (P19889) RecName: Full=60S acidic ribosomal protein P0; AltName:... 212 1e-54 AY072284_1(AY072284\|pid:none) Spodoptera frugiperda 60S acidic r... 212 1e-54
protein update	2009. 7. 9
PSORT	psg: 0.76 gvh: 0.28 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.43 mip: 0.06 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 32.0 %: cytoplasmic 32.0 %: mitochondrial 24.0 %: nuclear 8.0 %: cytoskeletal 4.0 %: extracellular, including cell wall >> prediction for VFA225 is cyt
5' end seq. ID	VFA225F
5' end seq.	>VFA225F.Seq AGTCTCAGTATTACTTTATCTTTAAATTCTCATACACAACAAGATGTCCGGGGCAGGAAG TAAAAGAAAGAACGTTTTCATTGAAAAAGCTACCAAGCTTTTCACCACTTACGACAAAAT GATCGTCGCCGAAGCTAATTTTGTAGGTTCAAGCCAATTACAAAAGATCANGAAAATCCA TCCGTGGTATCGGTGCCGTTCTCATGGGTAAGAAGACTATGATCCGTAAGGTCATCCGTG ATTTAGCTGATTCTAAACCAGAACTCGATGCCTTAAATACCTACTTAAAACAAAACACCT GTATCATTTTCTGTAAAGATAACATCGCTGAAGTTAAACGTGTTATCAATACTCAACGTG TTGGTGCCCCAGCTAAAGCAGGTGTTTTCGCTCCAAACGATGTTATCATCCCAGCCGGTC CAACTGGTATGGAACCAACCCAAACCTCTTTCCTCCAAGATTTAAAGATTGCCACTAAAA TCAACAGAGGTCAAATCGATATCGTCAATGAAGTCCACATCATTAAAACCGGTCAAAAAG TTGGTGCCTCAGAAGCTACCCTCTTACAAAAATTGAACATCAAACCATTCACCTATGGTT TAGAACCAAAAATCATCTATGATGCTGGTGCCTGTTATTCACCATCTA----------
Length of 5' end seq.	648
3' end seq. ID	VFA225Z
3' end seq.	>VFA225Z.Seq ----------ANCAGGTGTTTTCGCTCCAAACGATGTTATCATCCCAGCCGGTCCAANTG GTATGGAACCAACCCAAACCTCTTTCCTCCAAGATTTAAAGATTGCCACTAAAATCAACA GAGGTCAAATCGATATNGTCAATGAAGTCCACATCATTAAAACCGGTCAAAAAGTTGGTG CCTCAGAAGCTACCCTCTTACAAAAATTGAACATCAAACCATTCACCTATGGTTTAGAAC CAAAAATCATCTATGATGCTGGTGCCTGTTATTCACCATCTATCTCTGAAGAAGATTTCA TCAACAAATTCAAACAAGGTATTTTCAACATTGCTGCCATCTCCTTGGAAATTGGTTACC CAACCGTTGCTTCAATTCCACATTCAGTCATGAATGCTTTCAAGAATTTATTAGCCATCT CATTCGAAACCTCTTACACTTTCGATGCTGCTGAAAAATTCAAATCAGCCGCTGCTGCTG CCCCAGTTGCTGCCGCTCCATCCGCTGCTGCTCCAGCTGCCGCTGCCAANAAAGTCGTCG TCGAAGAAAAGAAAGAAGAATCAGATGATGATATGGGTATGGGTCTCTTNATTAAGATTT AAANAATAATTTTTTTTTTCAAAAAACATCAAAAAAAAA
Length of 3' end seq.	629
Connected seq. ID	VFA225P
Connected seq.	>VFA225P.Seq AGTCTCAGTATTACTTTATCTTTAAATTCTCATACACAACAAGATGTCCGGGGCAGGAAG TAAAAGAAAGAACGTTTTCATTGAAAAAGCTACCAAGCTTTTCACCACTTACGACAAAAT GATCGTCGCCGAAGCTAATTTTGTAGGTTCAAGCCAATTACAAAAGATCANGAAAATCCA TCCGTGGTATCGGTGCCGTTCTCATGGGTAAGAAGACTATGATCCGTAAGGTCATCCGTG ATTTAGCTGATTCTAAACCAGAACTCGATGCCTTAAATACCTACTTAAAACAAAACACCT GTATCATTTTCTGTAAAGATAACATCGCTGAAGTTAAACGTGTTATCAATACTCAACGTG TTGGTGCCCCAGCTAAAGCAGGTGTTTTCGCTCCAAACGATGTTATCATCCCAGCCGGTC CAACTGGTATGGAACCAACCCAAACCTCTTTCCTCCAAGATTTAAAGATTGCCACTAAAA TCAACAGAGGTCAAATCGATATCGTCAATGAAGTCCACATCATTAAAACCGGTCAAAAAG TTGGTGCCTCAGAAGCTACCCTCTTACAAAAATTGAACATCAAACCATTCACCTATGGTT TAGAACCAAAAATCATCTATGATGCTGGTGCCTGTTATTCACCATCTA----------AN CAGGTGTTTTCGCTCCAAACGATGTTATCATCCCAGCCGGTCCAANTGGTATGGAACCAA CCCAAACCTCTTTCCTCCAAGATTTAAAGATTGCCACTAAAATCAACAGAGGTCAAATCG ATATNGTCAATGAAGTCCACATCATTAAAACCGGTCAAAAAGTTGGTGCCTCAGAAGCTA CCCTCTTACAAAAATTGAACATCAAACCATTCACCTATGGTTTAGAACCAAAAATCATCT ATGATGCTGGTGCCTGTTATTCACCATCTATCTCTGAAGAAGATTTCATCAACAAATTCA AACAAGGTATTTTCAACATTGCTGCCATCTCCTTGGAAATTGGTTACCCAACCGTTGCTT CAATTCCACATTCAGTCATGAATGCTTTCAAGAATTTATTAGCCATCTCATTCGAAACCT CTTACACTTTCGATGCTGCTGAAAAATTCAAATCAGCCGCTGCTGCTGCCCCAGTTGCTG CCGCTCCATCCGCTGCTGCTCCAGCTGCCGCTGCCAANAAAGTCGTCGTCGAAGAAAAGA AAGAAGAATCAGATGATGATATGGGTATGGGTCTCTTNATTAAGATTTAAANAATAATTT TTTTTTTCAAAAAACATCAAAAAAAAA
Length of connected seq.	1277
Full length Seq ID	VFA225E
Full length Seq.	>VFA225E.Seq AGTCTCAGTATTACTTTATCTTTAAATTCTCATACACAACAAGATGTCCGGGGCAGGAAG TAAAAGAAAGAACGTTTTCATTGAAAAAGCTACCAAGCTTTTCACCACTTACGACAAAAT GATCGTCGCCGAAGCTAATTTTGTAGGTTCAAGCCAATTACAAAAGATCANGAAAATCCA TCCGTGGTATCGGTGCCGTTCTCATGGGTAAGAAGACTATGATCCGTAAGGTCATCCGTG ATTTAGCTGATTCTAAACCAGAACTCGATGCCTTAAATACCTACTTAAAACAAAACACCT GTATCATTTTCTGTAAAGATAACATCGCTGAAGTTAAACGTGTTATCAATACTCAACGTG TTGGTGCCCCAGCTAAAGCAGGTGTTTTCGCTCCAAACGATGTTATCATCCCAGCCGGTC CAACTGGTATGGAACCAACCCAAACCTCTTTCCTCCAAGATTTAAAGATTGCCACTAAAA TCAACAGAGGTCAAATCGATATCGTCAATGAAGTCCACATCATTAAAACCGGTCAAAAAG TTGGTGCCTCAGAAGCTACCCTCTTACAAAAATTGAACATCAAACCATTCACCTATGGTT TAGAACCAAAAATCATCTATGATGCTGGTGCCTGTTATTCACCATCTATCTCTGAAGAAG ATTTCATCAACAAATTCAAACAAGGTATTTTCAACATTGCTGCCATCTCCTTGGAAATTG GTTACCCAACCGTTGCTTCAATTCCACATTCAGTCATGAATGCTTTCAAGAATTTATTAG CCATCTCATTCGAAACCTCTTACACTTTCGATGCTGCTGAAAAATTCAAATCAGCCGCTG CTGCTGCCCCAGTTGCTGCCGCTCCATCCGCTGCTGCTCCAGCTGCCGCTGCCAANAAAG TCGTCGTCGAAGAAAAGAAAGAAGAATCAGATGATGATATGGGTATGGGTCTCTTNATTA AGATTTAAANAATAATTTTTTTTTTCAAAAAACATCAAAAAAAAA
Length of full length seq.	1005

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas