VFA222
Library VF
(Link to library)
Clone ID VFA222
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15950-1
Original site URL
Representative seq. ID VFA222Z
(Link to Original site)
Representative DNA sequence
>VFA222 (VFA222Q) /CSM/VF/VFA2-A/VFA222Q.Seq.d/
XXXXXXXXXXCAGTTTTACCAGTTCGTATTATCTTGTTGCTATTTGGTGCAGGTGCTGTC
GAAGGTTCATGTCGTTGGTGGTCAAGAGATCATCGTGCTCATCATCGTTATCTCGATACT
GATAAAGATCCATATTCAGCTTCATTGGGTTTCTGGCATTCCCATTTCATTTGGTTAATG
TTCAAACAAGATCCAAAGAAAATCGGTAGAGCAAACATTGACGACCTTAACGCCGATCCA
TGGGTTATGTGGCAACATAAACATTACATTAAAATCGCCACTTTTATGGGTCTCGTTTTC
CCAACATTGGTAGCTGGTTTAGGTTGGGGTGATTGGGCTGGTGGTTATTTCTACTCTGGT
GTACTTCGTCTCGTTACAGTTCAACATTCCACATTCTTGGTCAATTCATTGGCTCATTAT
TTAGGTGACTCTCCATACGATGATGAACATACTCCAAAGGATTCAGTTGTGACTGCTATA
TTAACATTTGGTGAAGGTTATCATAACTTCCATCATGAATTCCCAAATGACTATAGAAAC
GCTTATAAATTCTATCAATATGATCCAACTAAATGGTT
sequence update 2001. 6. 1
Translated Amino Acid sequence
---VLPVRIILLLFGAGAVEGSCRWWSRDHRAHHRYLDTDKDPYSASLGFWHSHFIWLMF
KQDPKKIGRANIDDLNADPWVMWQHKHYIKIATFMGLVFPTLVAGLGWGDWAGGYFYSGV
LRLVTVQHSTFLVNSLAHYLGDSPYDDEHTPKDSVVTAILTFGEGYHNFHHEFPNDYRNA
YKFYQYDPTKW


Translated Amino Acid sequence (All Frames)
Frame A:
---sftssyylvaiwcrccrrfmslvvkrsscssslsry**rsifsfigflafpfhlvnv
qtrskenr*skh*rp*rrsmgyvat*tlh*nrhfygsrfpnigswfrlg*lgwwlfllwc
tssrysstfhilgqfigslfr*lsir**tyskgfscdcyiniw*rls*lps*ipk*l*kr
l*ilsi*sn*mv


Frame B:
---VLPVRIILLLFGAGAVEGSCRWWSRDHRAHHRYLDTDKDPYSASLGFWHSHFIWLMF
KQDPKKIGRANIDDLNADPWVMWQHKHYIKIATFMGLVFPTLVAGLGWGDWAGGYFYSGV
LRLVTVQHSTFLVNSLAHYLGDSPYDDEHTPKDSVVTAILTFGEGYHNFHHEFPNDYRNA
YKFYQYDPTKW


Frame C:
---fyqfvlsccylvqvlskvhvvggqeiivliivisilikihiqlhwvsgipisfg*cs
nkiqrksveqtlttltpihglcgninitlkspllwvsfsqhw*lv*vgviglvvistlvy
fvslqfniphswsihwlii*vtlhtmmnilqriql*lly*hlvkviitsimnsqmtietl
insinmiqlng


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP359 (VHP359Q) /CSM/VH/VHP3-C/VHP359Q.Seq.d/ 1126 0.0
VHP282 (VHP282Q) /CSM/VH/VHP2-D/VHP282Q.Seq.d/ 1126 0.0
VHI633 (VHI633Q) /CSM/VH/VHI6-B/VHI633Q.Seq.d/ 1126 0.0
VFA222 (VFA222Q) /CSM/VF/VFA2-A/VFA222Q.Seq.d/ 1126 0.0
VFM428 (VFM428Q) /CSM/VF/VFM4-B/VFM428Q.Seq.d/ 1090 0.0
VHK887 (VHK887Q) /CSM/VH/VHK8-D/VHK887Q.Seq.d/ 1072 0.0
VHE611 (VHE611Q) /CSM/VH/VHE6-A/VHE611Q.Seq.d/ 1066 0.0
VHL555 (VHL555Q) /CSM/VH/VHL5-C/VHL555Q.Seq.d/ 1053 0.0
VHB725 (VHB725Q) /CSM/VH/VHB7-B/VHB725Q.Seq.d/ 1047 0.0
VHJ240 (VHJ240Q) /CSM/VH/VHJ2-B/VHJ240Q.Seq.d/ 1041 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 1126 0.0 1
AF026401|AF026401.1 Mucor rouxii stearoyl-CoA desaturase (Ole1) gene, complete cds. 42 8e-09 5
AL033501|AL033501.1 C.albicans cosmid Ca41C10. 72 8e-09 1
AL396412|AL396412.1 T3 end of clone AR0AA030B05 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii. 54 3e-07 2
BM634131|BM634131.1 17000668813253 A.Gam.ad.cDNA1 Anopheles gambiae cDNA clone 19600448419669 5', mRNA sequence. 54 1e-05 2
J05676|J05676.1 Saccharomyces cerevisiae delta-9 fatty acid desaturase (OLE1) gene, complete cds. 60 3e-05 1
AQ874658|AQ874658.1 V112D8 mTn-3xHA/lacZ Insertion Library, strain Y2278 Saccharomyces cerevisiae genomic 5', genomic survey sequence. 60 3e-05 1
AR016873|AR016873.1 Sequence 1 from patent US 5777201. 60 3e-05 1
Z72577|Z72577.1 S.cerevisiae chromosome VII reading frame ORF YGL055w. 60 3e-05 1
AL392980|AL392980.1 T3 end of clone AR0AA008A11 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii. 44 2e-04 2
dna update 2003. 8.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116984_117(AC116984|pid:none) Dictyostelium discoideum chromos... 399 e-110
AY576801_1(AY576801|pid:none) Hortaea werneckii putative delta-9... 286 2e-76
EU857727_1(EU857727|pid:none) Hortaea werneckii delta-9 desatura... 286 3e-76
Y18554_1(Y18554|pid:none) Mortierella alpina ole2 gene for stear... 285 5e-76
DQ901954_1(DQ901954|pid:none) Aureobasidium pullulans putative d... 283 2e-75
S52746(S52746;S52745) stearoyl-CoA 9-desaturase (EC 1.14.19.1) [... 282 5e-75
(Q12618) RecName: Full=Acyl-CoA desaturase; EC=1.14.19.... 280 3e-74
AM920435_140(AM920435|pid:none) Penicillium chrysogenum Wisconsi... 278 6e-74
AB195980_1(AB195980|pid:none) Mortierella alpina gene for omega9... 278 6e-74
AP007162_283(AP007162|pid:none) Aspergillus oryzae RIB40 genomic... 278 8e-74
protein update 2009. 6.16
PSORT

psg: 0.97 gvh: 0.74 alm: 0.32 top: 0.57 tms: 0.07 mit: 0.29 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.80 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 1.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

32.0 %: extracellular, including cell wall
32.0 %: plasma membrane
24.0 %: endoplasmic reticulum
12.0 %: Golgi

>> prediction for VFA222 is exc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFA222Z
3' end seq.
>VFA222Z.Seq
----------CAGTTTTACCAGTTCGTATTATCTTGTTGCTATTTGGTGCAGGTGCTGTC
GAAGGTTCATGTCGTTGGTGGTCAAGAGATCATCGTGCTCATCATCGTTATCTCGATACT
GATAAAGATCCATATTCAGCTTCATTGGGTTTCTGGCATTCCCATTTCATTTGGTTAATG
TTCAAACAAGATCCAAAGAAAATCGGTAGAGCAAACATTGACGACCTTAACGCCGATCCA
TGGGTTATGTGGCAACATAAACATTACATTAAAATCGCCACTTTTATGGGTCTCGTTTTC
CCAACATTGGTAGCTGGTTTAGGTTGGGGTGATTGGGCTGGTGGTTATTTCTACTCTGGT
GTACTTCGTCTCGTTACAGTTCAACATTCCACATTCTTGGTCAATTCATTGGCTCATTAT
TTAGGTGACTCTCCATACGATGATGAACATACTCCAAAGGATTCAGTTGTGACTGCTATA
TTAACATTTGGTGAAGGTTATCATAACTTCCATCATGAATTCCCAAATGACTATAGAAAC
GCTTATAAATTCTATCAATATGATCCAACTAAATGGTT
Length of 3' end seq. 568
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -