VFA214 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VFA214
Library	VF (Link to library)
Clone ID	VFA214 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U14969-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VF/VFA2-A/VFA214Q.Seq.d/
Representative seq. ID	VFA214E (Link to Original site)
Representative DNA sequence	>VFA214 (VFA214Q) /CSM/VF/VFA2-A/VFA214Q.Seq.d/ ATCACCTTTTTAGAACGGATATCAATTTTTTCAAGCCAATAACCTAACATTTAATTTTTT CATTTGTCTCATTTAAATTTCAAGTAGTAATATACCCACCCTAATCACTCAATACAACAG AATGTTTTCCTCAGCCAACAATAATAATTCATTAAGTAATAACAAACCACCAAGCGTAGT AGTAGCAGAACAACAACAACAACACAATGGAACTACACTTTCAACTCCAATGGATGGAGT TGTTAGTGGAAGTGGAAGTGGTAAGAGTTTTGTAGTAGAATCTTTCAAGATTATGGATAT CATCATTCAATTCTTCCTTTTACAAGATTATCAATCCATAGATAATATATTGAATCAAGG CATATCCATAAACACACAAAATCAAGAAGGTGTAACACTATTACAATTGGCAATCCTAAA ACAAAACATTCCATACGTTAAATATTTAATTTTCAAAGGTGCTAATTTGAATTTAGGCGA TTTAACAGAATNGACACCACTCCACAAAGCAGTTTCTATTGGTTCAATGGATTTGGTTCA ACTTTTAGTCCAGAATGGTGCAAACTTAAACTCTCAAGATGAAGAGGGTGACTCACCCTC CCATTATGCCATTCGTGAATGCCAACCTCAAATCCTCAGTTACCTCTTGTCAAAAGGTGC CAATGCCAACTCTTTCAATGAAGATGGTGAATCTCTCTTACATTTATCAGCCTGTCTTGG TGATTTTGAATCCTCAAAATTACTTTTATCCTATGGCGCTGACTGTCAACTTTTAGATGA AAGTGGTGTTAGCCCATTAGCTGAAGCGAAATCAAATAATCACTCAAATATCGCTGATTT ATTATTAAATTCAATTCAAAACAACAACAGAAATATCAACACTCAACAAGGCAGTGATAT CTATCCATTTGGTAATTTAAGAGATCTTACTTATGGAGCAAGATCAACTGCTGTCTCNAC TTATTTTTAGCCAACAAACTATCACTTNTCAATCATTTCGAGATCGGAATTTTTTCATTT CAATTTCTTTAANGATTTTTCCTCAAAACCAAGAATTTTTTGTTCATCTAAATCAAATAT ATCTTTAATCCTTGTAAAAATT
sequence update	2001. 6. 9
Translated Amino Acid sequence	spfngyqffqannltfnfficliISSSNIPTLITQYNRMFSSANNNNSLSNNKPPSVV VAEQQQQHNGTTLSTPMDGVVSGSGSGKSFVVESFKIMDIIIQFFLLQDYQSIDNILNQG ISINTQNQEGVTLLQLAILKQNIPYVKYLIFKGANLNLGDLTEXTPLHKAVSIGSMDLVQ LLVQNGANLNSQDEEGDSPSHYAIRECQPQILSYLLSKGANANSFNEDGESLLHLSACLG DFESSKLLLSYGADCQLLDESGVSPLAEAKSNNHSNIADLLLNSIQNNNRNINTQQGSDI YPFGNLRDLTYGARSTAVSTYF*ptnyhxsiisrseffhfnffxdfsskprifcssksni slilvki
Translated Amino Acid sequence (All Frames)	Frame A: itflerisifssqpniffhlshlnfkythpnhsiqqnvflsqqfik*qttkrs ssrtttttqwnytfnsngwscwkwkwefcsrifqdygyhhsilpftrlsihryiesr hihkhtksrrcntitignpktkhsirifnfqrcfefrrfnrxdttpqssfywfngfgs tfspewcklklsrrgltlplchsmptsnpqlplvkrcqcqlfqrwisltfislsw filkitfilwrlstfrkwcpisseikslkyrfiikfnskqqqkyqhstrqy lsiwfkrsylwskincclxlflanklslxnhfeigifsfqflxfflktknflfiiky ifnpckn Frame B: spfngyqffqannltfnfficliISSSNIPTLITQYNRMFSSANNNNSLSNNKPPSVV VAEQQQQHNGTTLSTPMDGVVSGSGSGKSFVVESFKIMDIIIQFFLLQDYQSIDNILNQG ISINTQNQEGVTLLQLAILKQNIPYVKYLIFKGANLNLGDLTEXTPLHKAVSIGSMDLVQ LLVQNGANLNSQDEEGDSPSHYAIRECQPQILSYLLSKGANANSFNEDGESLLHLSACLG DFESSKLLLSYGADCQLLDESGVSPLAEAKSNNHSNIADLLLNSIQNNNRNINTQQGSDI YPFGNLRDLTYGARSTAVSTYFptnyhxsiisrseffhfnffxdfsskprifcssksni slilvki Frame C: hlfrtdinffkpithlifsfvsfkfqvviyppslnttecfpqptiiihvitnhqa* qnnnnntmelhfqlqwmellvevevvrvlnlsrlwissfnssfykiinpiiyika ypthkikkvhyynwqsnktfhtlnifskvliiaiqnxhhstkqfllvqwiwfn fsrmvqttlkmkrvthppimpfvnanlkssvtscqkvpmptlsmkmvnlsyiyqpvlv ilnpqnyfypmaltvnfmkvvlahlkrnqiitqisliyyiqfkttteistlnkavis ihlvieillmeqdqllsxlifsqqtitxqsfrdrnffisislxifpqnqeffvhlnqiy lslk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VFA214 (VFA214Q) /CSM/VF/VFA2-A/VFA214Q.Seq.d/ 1750 0.0 AHE156 (AHE156Q) /CSM/AH/AHE1-C/AHE156Q.Seq.d/ 1715 0.0 SSA443 (SSA443Q) /CSM/SS/SSA4-B/SSA443Q.Seq.d/ 1693 0.0 SSL708 (SSL708Q) /CSM/SS/SSL7-A/SSL708Q.Seq.d/ 1358 0.0 FC-BF18 (FC-BF18Q) /CSM/FC/FC-BF/FC-BF18Q.Seq.d/ 1292 0.0 FC-423 (FC-423Q) /CSM/CG/CG-FC/FC-423Q.Seq.d/ 1292 0.0 FC-BE12 (FC-BE12Q) /CSM/FC/FC-BE/FC-BE12Q.Seq.d/ 954 0.0 SLC314 (SLC314Q) /CSM/SL/SLC3-A/SLC314Q.Seq.d/ 936 0.0 SLE317 (SLE317Q) /CSM/SL/SLE3-A/SLE317Q.Seq.d/ 886 0.0 CHC848 (CHC848Q) /CSM/CH/CHC8-B/CHC848Q.Seq.d/ 848 0.0
own update	2002.12.15
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116977\|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 1695 0.0 2 AC004280\|AC004280.1 Drosophila melanogaster DNA sequence (P1 DS01142 (D148)), complete sequence. 46 0.040 2 AL355609\|AL355609.9 Human DNA sequence from clone RP11-282D7 on chromosome 13. 34 0.19 5 AC134273\|AC134273.2 Rattus norvegicus clone CH230-288F13, * SEQUENCING IN PROGRESS *, 2 unordered pieces. 48 0.23 1 AI070146\|AI070146.1 UI-R-Y0-lu-g-12-0-UI.s1 UI-R-Y0 Rattus norvegicus cDNA clone UI-R-Y0-lu-g-12-0-UI 3', mRNA sequence. 48 0.23 1 AC008258\|AC008258.4 Drosophila melanogaster, chromosome 2R, region 43C-43C, BAC clone BACR04G20, complete sequence. 46 0.27 4 AC084257\|AC084257.2 Homo sapiens chromosome 8, clone RP1-164F9, complete sequence. 44 0.62 4 AE003841\|AE003841.4 Drosophila melanogaster chromosome 2R, section 9 of 74 of the complete sequence. 46 0.68 4 AE014846\|AE014846.1 Plasmodium falciparum 3D7 chromosome 12, section 3 of 9 of the complete sequence. 36 0.69 9 AC068780\|AC068780.31 Homo sapiens 12 BAC RP11-163B7 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 40 0.75 4
dna update	2003. 8.15
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value CP001102_1320(CP001102\|pid:none) Candidatus Amoebophilus asiatic... 114 8e-24 CP001230_364(CP001230\|pid:none) Persephonella marina EX-H1, comp... 102 2e-20 AY195855_1(AY195855\|pid:none) Synthetic construct ankyrin repeat... 102 2e-20 CP001102_794(CP001102\|pid:none) Candidatus Amoebophilus asiaticu... 100 1e-19 AY195856_1(AY195856\|pid:none) Synthetic construct ankyrin repeat... 100 2e-19 CP001404_1850(CP001404\|pid:none) Sulfolobus islandicus Y.N.15.51... 100 2e-19 (Q4UMH6) RecName: Full=Putative ankyrin repeat protein RF_0381; ... 100 2e-19 AM999887_409(AM999887\|pid:none) Wolbachia endosymbiont of Culex ... 97 1e-18 AM999887_389(AM999887\|pid:none) Wolbachia endosymbiont of Culex ... 94 7e-18 CP001230_365(CP001230\|pid:none) Persephonella marina EX-H1, comp... 94 9e-18
protein update	2009. 7. 9
PSORT	psg: 0.83 gvh: 0.44 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.40 mip: 0.04 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 40.0 %: mitochondrial 32.0 %: nuclear 24.0 %: cytoplasmic 4.0 %: cytoskeletal >> prediction for VFA214 is mit
5' end seq. ID	VFA214F
5' end seq.	>VFA214F.Seq ATCACCTTTTTAGAACGGATATCAATTTTTTCAAGCCAATAACCTAACATTTAATTTTTT CATTTGTCTCATTTAAATTTCAAGTAGTAATATACCCACCCTAATCACTCAATACAACAG AATGTTTTCCTCAGCCAACAATAATAATTCATTAAGTAATAACAAACCACCAAGCGTAGT AGTAGCAGAACAACAACAACAACACAATGGAACTACACTTTCAACTCCAATGGATGGAGT TGTTAGTGGAAGTGGAAGTGGTAAGAGTTTTGTAGTAGAATCTTTCAAGATTATGGATAT CATCATTCAATTCTTCCTTTTACAAGATTATCAATCCATAGATAATATATTGAATCAAGG CATATCCATAAACACACAAAATCAAGAAGGTGTAACACTATTACAATTGGCAATCCTAAA ACAAAACATTCCATACGTTAAATATTTAATTTTCAAAGGTGCTAATTTGAATTTAG---- ------
Length of 5' end seq.	476
3' end seq. ID	VFA214Z
3' end seq.	>VFA214Z.Seq ----------AACAAAACATTCCATACGTTAAATATTTAATTTTCAAAGGTGCTAATTTG AANTTAGGCGATTTAACAGAATNGACACCACTCCACAAAGCAGTTTCTATTGGTTCAATG GATTTGGTTCAACTTTTAGTCCAGAATGGTGCAAACTTAAACTCTCAAGATGAAGAGGGT GACTCACCCTCCCATTATGCCATTCGTGAATGCCAACCTCAAATCCTCAGTTACCTCTTG TCAAAAGGTGCCAATGCCAACTCTTTCAATGAAGATGGTGAATCTCTCTTACATTTATCA GCCTGTCTTGGTGATTTTGAATCCTCAAAATTACTTTTATCCTATGGCGCTGACTGTCAA CTTTTAGATGAAAGTGGTGTTAGCCCATTAGCTGAAGCGAAATCAAATAATCACTCAAAT ATCGCTGATTTATTATTAAATTCAATTCAAAACAACAACAGAAATATCAACACTCAACAA GGCAGTGATATCTATCCATTTGGTAATTTAAGAGATCTTACTTATGGAGCAAGATCAACT GCTGTCTCNACTTATTTTTAGCCAACAAACTATCACTTNTCAATCATTTCGAGATCGGAA TTTTTTCATTTCAATTTCTTTAANGATTTTTCCTCAAAACCAAGAATTTTTTGTTCATCT AAATCAAATATATCTTTAATCCTTGTAAAAATT
Length of 3' end seq.	683
Connected seq. ID	VFA214P
Connected seq.	>VFA214P.Seq ATCACCTTTTTAGAACGGATATCAATTTTTTCAAGCCAATAACCTAACATTTAATTTTTT CATTTGTCTCATTTAAATTTCAAGTAGTAATATACCCACCCTAATCACTCAATACAACAG AATGTTTTCCTCAGCCAACAATAATAATTCATTAAGTAATAACAAACCACCAAGCGTAGT AGTAGCAGAACAACAACAACAACACAATGGAACTACACTTTCAACTCCAATGGATGGAGT TGTTAGTGGAAGTGGAAGTGGTAAGAGTTTTGTAGTAGAATCTTTCAAGATTATGGATAT CATCATTCAATTCTTCCTTTTACAAGATTATCAATCCATAGATAATATATTGAATCAAGG CATATCCATAAACACACAAAATCAAGAAGGTGTAACACTATTACAATTGGCAATCCTAAA ACAAAACATTCCATACGTTAAATATTTAATTTTCAAAGGTGCTAATTTGAATTTAG---- ------AACAAAACATTCCATACGTTAAATATTTAATTTTCAAAGGTGCTAATTTGAANT TAGGCGATTTAACAGAATNGACACCACTCCACAAAGCAGTTTCTATTGGTTCAATGGATT TGGTTCAACTTTTAGTCCAGAATGGTGCAAACTTAAACTCTCAAGATGAAGAGGGTGACT CACCCTCCCATTATGCCATTCGTGAATGCCAACCTCAAATCCTCAGTTACCTCTTGTCAA AAGGTGCCAATGCCAACTCTTTCAATGAAGATGGTGAATCTCTCTTACATTTATCAGCCT GTCTTGGTGATTTTGAATCCTCAAAATTACTTTTATCCTATGGCGCTGACTGTCAACTTT TAGATGAAAGTGGTGTTAGCCCATTAGCTGAAGCGAAATCAAATAATCACTCAAATATCG CTGATTTATTATTAAATTCAATTCAAAACAACAACAGAAATATCAACACTCAACAAGGCA GTGATATCTATCCATTTGGTAATTTAAGAGATCTTACTTATGGAGCAAGATCAACTGCTG TCTCNACTTATTTTTAGCCAACAAACTATCACTTNTCAATCATTTCGAGATCGGAATTTT TTCATTTCAATTTCTTTAANGATTTTTCCTCAAAACCAAGAATTTTTTGTTCATCTAAAT CAAATATATCTTTAATCCTTGTAAAAATT
Length of connected seq.	1159
Full length Seq ID	VFA214E
Full length Seq.	>VFA214E.Seq ATCACCTTTTTAGAACGGATATCAATTTTTTCAAGCCAATAACCTAACATTTAATTTTTT CATTTGTCTCATTTAAATTTCAAGTAGTAATATACCCACCCTAATCACTCAATACAACAG AATGTTTTCCTCAGCCAACAATAATAATTCATTAAGTAATAACAAACCACCAAGCGTAGT AGTAGCAGAACAACAACAACAACACAATGGAACTACACTTTCAACTCCAATGGATGGAGT TGTTAGTGGAAGTGGAAGTGGTAAGAGTTTTGTAGTAGAATCTTTCAAGATTATGGATAT CATCATTCAATTCTTCCTTTTACAAGATTATCAATCCATAGATAATATATTGAATCAAGG CATATCCATAAACACACAAAATCAAGAAGGTGTAACACTATTACAATTGGCAATCCTAAA ACAAAACATTCCATACGTTAAATATTTAATTTTCAAAGGTGCTAATTTGAATTTAGGCGA TTTAACAGAATNGACACCACTCCACAAAGCAGTTTCTATTGGTTCAATGGATTTGGTTCA ACTTTTAGTCCAGAATGGTGCAAACTTAAACTCTCAAGATGAAGAGGGTGACTCACCCTC CCATTATGCCATTCGTGAATGCCAACCTCAAATCCTCAGTTACCTCTTGTCAAAAGGTGC CAATGCCAACTCTTTCAATGAAGATGGTGAATCTCTCTTACATTTATCAGCCTGTCTTGG TGATTTTGAATCCTCAAAATTACTTTTATCCTATGGCGCTGACTGTCAACTTTTAGATGA AAGTGGTGTTAGCCCATTAGCTGAAGCGAAATCAAATAATCACTCAAATATCGCTGATTT ATTATTAAATTCAATTCAAAACAACAACAGAAATATCAACACTCAACAAGGCAGTGATAT CTATCCATTTGGTAATTTAAGAGATCTTACTTATGGAGCAAGATCAACTGCTGTCTCNAC TTATTTTTAGCCAACAAACTATCACTTNTCAATCATTTCGAGATCGGAATTTTTTCATTT CAATTTCTTTAANGATTTTTCCTCAAAACCAAGAATTTTTTGTTCATCTAAATCAAATAT ATCTTTAATCCTTGTAAAAATT
Length of full length seq.	1102

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas