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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFA207
Library VF
(Link to library)
Clone ID VFA207
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16203-1
Original site URL
Representative seq. ID VFA207F
(Link to Original site)
Representative DNA sequence 
>VFA207 (VFA207Q) /CSM/VF/VFA2-A/VFA207Q.Seq.d/
CACACATAATATATATTAAAATGTCTTACACTCCAAACTCATTCGTCGGTGTTTTATATG
GTCTTAGCGTTTTATTTGGCATTTCACATGGTGTCGGTAAATTAAATACCTTCAAATCAA
TTGCCAAAGAAGATTTATCAAAAGAAATTAAAACTACTGCTACTGCTGAAAAATCAAAAG
CATACCAAGAAGGTTTCGAAGCTGGTGTTAAATCAACTCAACCAAAAGCAGGAGGTGTCA
CTTATGGTAGTGAAATCGAAAAACTCATTGCTGAAACCTGTGGTACCAACCTTTTACAAC
AAAACTAAAATAAACCAACAACAGTAATATAATAATATAAATACAAATTCCACATATTTA
AAAAAATAAATCTACAAAAAAAAAAXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence 
HIIYIKMSYTPNSFVGVLYGLSVLFGISHGVGKLNTFKSIAKEDLSKEIKTTATAEKSKA
YQEGFEAGVKSTQPKAGGVTYGSEIEKLIAETCGTNLLQQN*nkpttvi**ykykfhifk
kinlqkk---
Translated Amino Acid sequence (All Frames) 
Frame A:
ht*yilkcltlqthssvfymvlafylafhmvsvn*ipsnqlpkkiyqkklklllllknqk
htkkvsklvlnqlnqkqevslmvvksknsllkpvvptfynktkinqqq*ynnintnstyl
kk*iykkk---


Frame B:
thniy*nvlhsklirrcfiws*rfiwhftwcr*ikylqincqrrfikrn*nycyc*kiks
iprrfrswc*instksrrchlw**nrkthc*nlwyqpfttklk*tnnsniii*iqiphi*
knkstkk---


Frame C:
HIIYIKMSYTPNSFVGVLYGLSVLFGISHGVGKLNTFKSIAKEDLSKEIKTTATAEKSKA
YQEGFEAGVKSTQPKAGGVTYGSEIEKLIAETCGTNLLQQN*nkpttvi**ykykfhifk
kinlqkk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK142 (VSK142Q) /CSM/VS/VSK1-B/VSK142Q.Seq.d/                        712   0.0
VSH163 (VSH163Q) /CSM/VS/VSH1-C/VSH163Q.Seq.d/                        712   0.0
VSG577 (VSG577Q) /CSM/VS/VSG5-D/VSG577Q.Seq.d/                        712   0.0
VHO746 (VHO746Q) /CSM/VH/VHO7-B/VHO746Q.Seq.d/                        712   0.0
VHG162 (VHG162Q) /CSM/VH/VHG1-C/VHG162Q.Seq.d/                        712   0.0
VFA207 (VFA207Q) /CSM/VF/VFA2-A/VFA207Q.Seq.d/                        712   0.0
SSA638 (SSA638Q) /CSM/SS/SSA6-B/SSA638Q.Seq.d/                        698   0.0
VSC320 (VSC320Q) /CSM/VS/VSC3-A/VSC320Q.Seq.d/                        696   0.0
VHF683 (VHF683Q) /CSM/VH/VHF6-D/VHF683Q.Seq.d/                        684   0.0
VSH281 (VSH281Q) /CSM/VS/VSH2-D/VSH281Q.Seq.d/                        652   0.0
own update 2002.12.15
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AY254473|AY254473.1 Dictyostelium discoideum nucleotide exchange factor RasGEF Q (gefQ) gene, complete cds.   613  0.0  2
L04534|L04534.1 Rotavirus non-structural protein (NS35) gene, complete cds.    52  0.005  1
AB022770|AB022770.1 Human rotavirus mRNA for NSP2, complete cds.    52  0.005  1
X57944|X57944.1 Human rotavirus segment 7 gp33 gene.    52  0.005  1
AC092543|AC092543.3 Homo sapiens BAC clone RP11-291E21 from 4, complete sequence.    42  0.011  5
Z21640|Z21640.1 Bovine rotavirus (Strain RF) mRNA for non-structural protein (NSP2).    42  0.072  2
L04530|L04530.1 Rotavirus sp. non-structural protein (NS35) gene, complete cds.    42  0.072  2
AF378133|AF378133.1 Plasmodium falciparum clone c-18-4-23 MB2 mRNA, partial cds.    48  0.081  1
AF378136|AF378136.1 Plasmodium falciparum clone g2-6-8 MB2 gene, partial cds.    48  0.081  1
AF378132|AF378132.1 Plasmodium falciparum clone c-3-1-18 MB2 mRNA, partial cds.    48  0.081  1
dna update 2003. 8.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000141_1819(CP000141|pid:none) Carboxydothermus hydrogenoforma...    37   0.21
CP000478_3069(CP000478|pid:none) Syntrophobacter fumaroxidans MP...    33   4.0
CU928165_121(CU928165|pid:none) Kluyveromyces thermotolerans str...    32   8.9
AM494968_122(AM494968|pid:none) Leishmania braziliensis chromoso...    32   8.9
(Q4A5G1) RecName: Full=Trigger factor;          Short=TF;  &AE01...    32   8.9
protein update 2009. 6.16
PSORT 

 psg: 0.94  gvh: 0.57  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VFA207 is cyt
5' end seq. ID VFA207F
5' end seq. 
>VFA207F.Seq
CACACATAATATATATTAAAATGTCTTACACTCCAAACTCATTCGTCGGTGTTTTATATG
GTCTTAGCGTTTTATTTGGCATTTCACATGGTGTCGGTAAATTAAATACCTTCAAATCAA
TTGCCAAAGAAGATTTATCAAAAGAAATTAAAACTACTGCTACTGCTGAAAAATCAAAAG
CATACCAAGAAGGTTTCGAAGCTGGTGTTAAATCAACTCAACCAAAAGCAGGAGGTGTCA
CTTATGGTAGTGAAATCGAAAAACTCATTGCTGAAACCTGTGGTACCAACCTTTTACAAC
AAAACTAAAATAAACCAACAACAGTAATATAATAATATAAATACAAATTCCACATATTTA
AAAAAATAAATCTACAAAAAAAAAA----------
Length of 5' end seq. 385
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -