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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFA206
Library VF
(Link to library)
Clone ID VFA206
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15333-1
Original site URL
Representative seq. ID VFA206P
(Link to Original site)
Representative DNA sequence 
>VFA206 (VFA206Q) /CSM/VF/VFA2-A/VFA206Q.Seq.d/
ACAAGCTGAAATTGATAATGAACCAAGATTTTTAGAATGTTTCAAAACTTTCTTTGATAA
AGCAGCTGGTTTAACCAATTTAAAACCAGGTGTTTTAAATAATATGAAAGAATGTAATGT
TGCTCTCCGTGTTGAATTCCCAATCAAGAATGAACATGGTGATGTTGATATTATTGCAGG
TTATCGTGCACAACATTCACACCATCGTTTACCATGCAAAGGTGGTATTCGTTTCAGTGA
AGAAGTAGATCTCCAAGAAGTTATGGCCTTAGCTTCATTGATGACTTATAAATGTGCTTG
TCGTCGATGTTCCATTTGGTGGTGCTAAAGGTGGTGTCCGTATCGACCCAAAGAAATACA
CTGTCGCCCAACGTGAAAAGATCACTCGTGCCTACACTCTCCTCTTATGTCAAAAGAATT
TCATCGGACCAGGTGTCGATGTACCAGCTCCAGATATGGGTACAGGTGAACAAGAXXXXX
XXXXXACTTTCATTGATTTCCCAGGTGCCACCAACATTGTCGACTCTGTCAAAGCCTTAG
AGATCCCATGTGATATCTTAATCCCAGCTGCCCTCGAAAAACAAATCCACATTGGTAACG
TCGCCGATATTCAAGCTAAATTAATTGGTGAAGCTGCCAACGGTCCAATGACCCCACGTG
CTGACCAAATCCTCCTCAATAGAGGTCATGTCATCATTCCAGATCTCCTCTTAAATGCTG
GTGGTGTCACTGTATCATACTTTGAATGGTTAAAGAATCTTTCTCACGTTCGTTTCGGTC
GTTTGAACAAGAAATGGGAAGAATCCTCAAAGAAATTATTATTAGAATTTGTTGAATCAA
CCGTCAACAAGAAATTATCAGAAGCTGAAAGAAGCTTAATCATCCATGGTGCTGATGAAA
TCGATATCGTTCGTTCAGGTCTCGAAGATACCATGCAAAATGCTTGTGCTGAAACCAGAA
AGACTGCAAATGAAAAGAACACNNATTACCGTTCTGCCGCTTTATACAATGCTATCATGA
AGATTAAAGCTGTCTANAATCATCNGGAATGTCTTCTCTT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
klklimnqdf*nvsklslikqlv*pi*nqvf*ii*knvmllsvlnsqsrmnmvmlillqv
ivhnihtivyhakvvfvsvkk*iskklwp*lh**LINVLVVDVPFGGAKGGVRIDPKKYT
VAQREKITRAYTLLLCQKNFIGPGVDVPAPDMGTGEQ---

---TFIDFPGATNIVDSVKALEIPCDILIPAALEKQIHIGNVADIQAKLIGEAANGPMTP
RADQILLNRGHVIIPDLLLNAGGVTVSYFEWLKNLSHVRFGRLNKKWEESSKKLLLEFVE
STVNKKLSEAERSLIIHGADEIDIVRSGLEDTMQNACAETRKTANEKNTXYRSAALYNAI
MKIKAVXNHXECLL
Translated Amino Acid sequence (All Frames) 
Frame A:
ts*n***tkifrmfqnfl**sswfnqfktrcfk*yerm*ccspc*ipnqe*tw*c*yycr
lscttftpsftmqrwysfq*rsrsprsyglsfiddl*mclssmfhlvvlkvvsvstqrnt
lspnvkrslvptlssyvkrissdqvsmyqlqiwvqvnk---

---TFIDFPGATNIVDSVKALEIPCDILIPAALEKQIHIGNVADIQAKLIGEAANGPMTP
RADQILLNRGHVIIPDLLLNAGGVTVSYFEWLKNLSHVRFGRLNKKWEESSKKLLLEFVE
STVNKKLSEAERSLIIHGADEIDIVRSGLEDTMQNACAETRKTANEKNTXYRSAALYNAI
MKIKAVXNHXECLL

Frame B:
qaeidneprflecfktffdkaagltnlkpgvlnnmkecnvalrvefpiknehgdvdiiag
yraqhshhrlpckggirfseevdlqevmalaslmtykcacrrcsiwwc*rwcpyrpkeih
crpt*kdhsclhsplmskefhrtrcrctssrygyr*tr---

---lslisqvpptlstlskp*rshvis*sqlpsknkstlvtspifkln*lvklptvq*ph
vltksssievmssfqiss*mlvvslyhtlng*rifltfvsvv*trngknpqrnyy*nlln
qpstrnyqklkea*ssmvlmksisfvqvskipckmlvlkperlqmkrtxitvlplytmls
*rlklsxiixnvfs

Frame C:
klklimnqdf*nvsklslikqlv*pi*nqvf*ii*knvmllsvlnsqsrmnmvmlillqv
ivhnihtivyhakvvfvsvkk*iskklwp*lh**LINVLVVDVPFGGAKGGVRIDPKKYT
VAQREKITRAYTLLLCQKNFIGPGVDVPAPDMGTGEQ---

---fh*fprchqhcrlcqslrdpm*ylnpscprktnphw*rrryss*inw*scqrsndpt
c*pnppq*rschhsrsplkcwwchciil*mvkesfsrsfrsfeqemgrilkeiiiric*i
nrqqeiirs*kklnhpwc**nryrsfrsrryhakclc*nqkdck*kehxlpfcrfiqcyh
ed*sclxssgmssl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFA206 (VFA206Q) /CSM/VF/VFA2-A/VFA206Q.Seq.d/                       2018   0.0
AFO134 (AFO134Q) /CSM/AF/AFO1-B/AFO134Q.Seq.d/                       1116   0.0
SFJ586 (SFJ586Q) /CSM/SF/SFJ5-D/SFJ586Q.Seq.d/                       1108   0.0
SFG811 (SFG811Q) /CSM/SF/SFG8-A/SFG811Q.Seq.d/                       1108   0.0
SFD163 (SFD163Q) /CSM/SF/SFD1-C/SFD163Q.Seq.d/                       1108   0.0
AFC621 (AFC621Q) /CSM/AF/AFC6-A/AFC621Q.Seq.d/                       1108   0.0
VFO672 (VFO672Q) /CSM/VF/VFO6-C/VFO672Q.Seq.d/                       1106   0.0
VFI815 (VFI815Q) /CSM/VF/VFI8-A/VFI815Q.Seq.d/                       1102   0.0
VFF884 (VFF884Q) /CSM/VF/VFF8-D/VFF884Q.Seq.d/                       1102   0.0
SFI283 (SFI283Q) /CSM/SF/SFI2-D/SFI283Q.Seq.d/                       1102   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

CD525630|CD525630.1 kw16f01.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to TR:Q23621 Q23621 ZK829.4 PROTEIN. [1] ;, mRNA sequence.    58  9e-14  3
BM879191|BM879191.1 ku09e02.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to TR:Q23621 Q23621 ZK829.4 PROTEIN. [1] ;, mRNA sequence.    60  1e-13  3
CD420727|CD420727.1 ku90g10.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to TR:Q23621 Q23621 ZK829.4 PROTEIN. [1] ;, mRNA sequence.    52  5e-13  3
CD525857|CD525857.1 kw26g12.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to TR:Q23621 Q23621 ZK829.4 PROTEIN. [1] ;, mRNA sequence.    54  2e-12  3
CD524962|CD524962.1 kw11g06.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to TR:Q23621 Q23621 ZK829.4 PROTEIN. [1] ;, mRNA sequence.    52  2e-12  3
BM880231|BM880231.1 ku06h09.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to TR:Q23621 Q23621 ZK829.4 PROTEIN. [1] ;, mRNA sequence.    52  4e-12  3
BI502159|BI502159.1 kt86a12.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q23621 Q23621 ZK829.4 PROTEIN. [1] ;, mRNA sequence.    52  4e-12  3
BM879960|BM879960.1 ku03c02.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to TR:O02375 O02375 PUTATIVE GLUTAMATE DEHYDROGENASE. ;, mRNA sequence.    52  4e-12  3
BQ091374|BQ091374.1 ku16e09.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q23621 Q23621 ZK829.4 PROTEIN. [1] ;, mRNA sequence.    52  4e-12  3
BQ090776|BQ090776.1 ku20a10.y1 Strongyloides ratti L3 adult pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q23621 Q23621 ZK829.4 PROTEIN. [1] ;, mRNA sequence.    52  4e-12  3
dna update 2003. 8.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54KB7) RecName: Full=Glutamate dehydrogenase, mitochondrial;  ...   314   4e-84
BX005174_8(BX005174|pid:none) Zebrafish DNA sequence from clone ...   139   3e-39
BC084455_1(BC084455|pid:none) Xenopus tropicalis glutamate dehyd...   137   3e-39
(P49448) RecName: Full=Glutamate dehydrogenase 2, mitochondrial;...   132   3e-38
BC103336_1(BC103336|pid:none) Bos taurus glutamate dehydrogenase...   138   4e-38
(Q64I00) RecName: Full=Glutamate dehydrogenase 2, mitochondrial;...   129   4e-38
AJ532825_1(AJ532825|pid:none) Salmo salar mRNA for glutamate deh...   131   4e-38
AJ419571_1(AJ419571|pid:none) Oncorhynchus mykiss partial mRNA f...   100   4e-38
(P00367) RecName: Full=Glutamate dehydrogenase 1, mitochondrial;...   135   5e-38
AK089152_1(AK089152|pid:none) Mus musculus 10 days neonate olfac...   135   5e-38
protein update 2009. 6.16
PSORT 

 psg: 0.75  gvh: 0.53  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: Golgi

>> prediction for VFA206 is cyt
5' end seq. ID VFA206F
5' end seq. 
>VFA206F.Seq
ACAAGCTGAAATTGATAATGAACCAAGATTTTTAGAATGTTTCAAAACTTTCTTTGATAA
AGCAGCTGGTTTAACCAATTTAAAACCAGGTGTTTTAAATAATATGAAAGAATGTAATGT
TGCTCTCCGTGTTGAATTCCCAATCAAGAATGAACATGGTGATGTTGATATTATTGCAGG
TTATCGTGCACAACATTCACACCATCGTTTACCATGCAAAGGTGGTATTCGTTTCAGTGA
AGAAGTAGATCTCCAAGAAGTTATGGCCTTAGCTTCATTGATGACTTATAAATGTGCTTG
TCGTCGATGTTCCATTTGGTGGTGCTAAAGGTGGTGTCCGTATCGACCCAAAGAAATACA
CTGTCGCCCAACGTGAAAAGATCACTCGTGCCTACACTCTCCTCTTATGTCAAAAGAATT
TCATCGGACCAGGTGTCGATGTACCAGCTCCAGATATGGGTACAGGTGAACAAGA-----
-----
Length of 5' end seq. 475
3' end seq. ID VFA206Z
3' end seq. 
>VFA206Z.Seq
----------ACTTTCATTGATTTCCCAGGTGCCACCAACATTGTCGACTCTGTCAAAGC
CTTAGAGATCCCATGTGATATCTTAATCCCAGCTGCCCTCGAAAAACAAATCCACATTGG
TAACGTCGCCGATATTCAAGCTAAATTAATTGGTGAAGCTGCCAACGGTCCAATGACCCC
ACGTGCTGACCAAATCCTCCTCAATAGAGGTCATGTCATCATTCCAGATCTCCTCTTAAA
TGCTGGTGGTGTCACTGTATCATACTTTGAATGGTTAAAGAATCTTTCTCACGTTCGTTT
CGGTCGTTTGAACAAGAAATGGGAAGAATCCTCAAAGAAATTATTATTAGAATTTGTTGA
ATCAACCGTCAACAAGAAATTATCAGAAGCTGAAAGAAGCTTAATCATCCATGGTGCTGA
TGAAATCGATATCGTTCGTTCAGGTCTCGAAGATACCATGCAAAATGCTTGTGCTGAAAC
CAGAAAGACTGCAAATGAAAAGAACACNNATTACCGTTCTGCCGCTTTATACAATGCTAT
CATGAAGATTAAAGCTGTCTANAATCATCNGGAATGTCTTCTCTT
Length of 3' end seq. 575
Connected seq. ID VFA206P
Connected seq. 
>VFA206P.Seq
ACAAGCTGAAATTGATAATGAACCAAGATTTTTAGAATGTTTCAAAACTTTCTTTGATAA
AGCAGCTGGTTTAACCAATTTAAAACCAGGTGTTTTAAATAATATGAAAGAATGTAATGT
TGCTCTCCGTGTTGAATTCCCAATCAAGAATGAACATGGTGATGTTGATATTATTGCAGG
TTATCGTGCACAACATTCACACCATCGTTTACCATGCAAAGGTGGTATTCGTTTCAGTGA
AGAAGTAGATCTCCAAGAAGTTATGGCCTTAGCTTCATTGATGACTTATAAATGTGCTTG
TCGTCGATGTTCCATTTGGTGGTGCTAAAGGTGGTGTCCGTATCGACCCAAAGAAATACA
CTGTCGCCCAACGTGAAAAGATCACTCGTGCCTACACTCTCCTCTTATGTCAAAAGAATT
TCATCGGACCAGGTGTCGATGTACCAGCTCCAGATATGGGTACAGGTGAACAAGA-----
-----ACTTTCATTGATTTCCCAGGTGCCACCAACATTGTCGACTCTGTCAAAGCCTTAG
AGATCCCATGTGATATCTTAATCCCAGCTGCCCTCGAAAAACAAATCCACATTGGTAACG
TCGCCGATATTCAAGCTAAATTAATTGGTGAAGCTGCCAACGGTCCAATGACCCCACGTG
CTGACCAAATCCTCCTCAATAGAGGTCATGTCATCATTCCAGATCTCCTCTTAAATGCTG
GTGGTGTCACTGTATCATACTTTGAATGGTTAAAGAATCTTTCTCACGTTCGTTTCGGTC
GTTTGAACAAGAAATGGGAAGAATCCTCAAAGAAATTATTATTAGAATTTGTTGAATCAA
CCGTCAACAAGAAATTATCAGAAGCTGAAAGAAGCTTAATCATCCATGGTGCTGATGAAA
TCGATATCGTTCGTTCAGGTCTCGAAGATACCATGCAAAATGCTTGTGCTGAAACCAGAA
AGACTGCAAATGAAAAGAACACNNATTACCGTTCTGCCGCTTTATACAATGCTATCATGA
AGATTAAAGCTGTCTANAATCATCNGGAATGTCTTCTCTT
Length of connected seq. 1050
Full length Seq ID -
Full length Seq. -
Length of full length seq. -