VFA148
Library VF
(Link to library)
Clone ID VFA148
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16460-1
Original site URL
Representative seq. ID VFA148Z
(Link to Original site)
Representative DNA sequence
>VFA148 (VFA148Q) /CSM/VF/VFA1-B/VFA148Q.Seq.d/
XXXXXXXXXXAGATGCTAAATCTGCTACACCAGCACCAGCTTCATCAGCACCAGCCGCCC
CAGTTGCACCAGCTGTTTCATCCACTCCAGTTGAATCAAAGAAAGGTCCAGGTTTAGGTG
CAGTTTTCGGTGAACTTAGCAAAGGTGATGGTGTTACCAGTGGTTTAAAAAAAGTTACCA
ACGATATGAAATCCAAAAATTTCACCGACAAATCATCAGTTGTTAAAGCTGCTGATACTA
AAGTCGCCAAAGTTGATGCTCCATCTAGACCAGCCGTTTTTGCTCTCCAAGGTAACAAAT
GGTCCATTGAATATCAAGTTAACAACAAAGAAATTGTCATTGCCGAGCCAGATAGTCGTC
AAACTGTTTACATTTTCCAATGTGTAAACTCTTTAGTTCAAATCAAAGGTAAAGTTAATG
CAATTACTCTTGATGGTTGTAAAAAGACTTCAATCGTTTTCGAAAATGCCATTTCCTCTT
GTGAAGTTGTCAATTGTAATGGTGTTGAAATCCAAGTCACTGGTCGTGTACCATCAATTG
CTATCGATAAGACAAGTGGTTGTCAAATTTATCTCTCTAAAGATTCTTTAGAAACTGAAA
TCGTCTCTTCAAAATCATCTGAAATGAATGTTTTAATTCCAGGTGCAACNTAAAATGANA
TTTAGTNAATTAGCNATTCCAGAACAATATAAAACTTCTGTTAAAGGNAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
---DAKSATPAPASSAPAAPVAPAVSSTPVESKKGPGLGAVFGELSKGDGVTSGLKKVTN
DMKSKNFTDKSSVVKAADTKVAKVDAPSRPAVFALQGNKWSIEYQVNNKEIVIAEPDSRQ
TVYIFQCVNSLVQIKGKVNAITLDGCKKTSIVFENAISSCEVVNCNGVEIQVTGRVPSIA
IDKTSGCQIYLSKDSLETEIVSSKSSEMNVLIPGAT*nxi*xisxsrti*nfc*rx


Translated Amino Acid sequence (All Frames)
Frame A:
---DAKSATPAPASSAPAAPVAPAVSSTPVESKKGPGLGAVFGELSKGDGVTSGLKKVTN
DMKSKNFTDKSSVVKAADTKVAKVDAPSRPAVFALQGNKWSIEYQVNNKEIVIAEPDSRQ
TVYIFQCVNSLVQIKGKVNAITLDGCKKTSIVFENAISSCEVVNCNGVEIQVTGRVPSIA
IDKTSGCQIYLSKDSLETEIVSSKSSEMNVLIPGAT*nxi*xisxsrti*nfc*rx


Frame B:
---mlnllhqhqlhqhqppqlhqlfhplqlnqrkvqv*vqfsvnlakvmvlpvv*kklpt
i*npkisptnhqllkllilkspklmlhldqpfllskvtngplniklttkklslpsqivvk
lftfsnv*tl*fkskvklmqlllmvvkrlqsfskmpfplvklsivmvlkskslvvyhqll
sirqvvvkfislkil*klksslqnhlk*mf*fqvqxkmxfsxlaipeqyktsvkg


Frame C:
---c*icytstsfistsrpsctscfihss*ikersrfrcsfr*t*qr*wcyqwfkksyqr
yeiqkfhrqiisc*sc*y*srqs*csi*tsrfcspr*qmvh*iss*qqrnchcrar*ssn
clhfpmcklfssnqr*s*cnys*wl*kdfnrfrkchfll*scql*wc*npshwsctincy
r*dkwlsnlsl*rffrn*nrlfkii*necfnsrcnxk*xlvn*xfqnniklllkx


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFA148 (VFA148Q) /CSM/VF/VFA1-B/VFA148Q.Seq.d/ 1316 0.0
VFA652 (VFA652Q) /CSM/VF/VFA6-C/VFA652Q.Seq.d/ 1269 0.0
SFD161 (SFD161Q) /CSM/SF/SFD1-C/SFD161Q.Seq.d/ 1263 0.0
SFE296 (SFE296Q) /CSM/SF/SFE2-D/SFE296Q.Seq.d/ 1261 0.0
AFE312 (AFE312Q) /CSM/AF/AFE3-A/AFE312Q.Seq.d/ 1253 0.0
AFJ112 (AFJ112Q) /CSM/AF/AFJ1-A/AFJ112Q.Seq.d/ 1251 0.0
AFG810 (AFG810Q) /CSM/AF/AFG8-A/AFG810Q.Seq.d/ 1251 0.0
VFL760 (VFL760Q) /CSM/VF/VFL7-C/VFL760Q.Seq.d/ 1243 0.0
CFF143 (CFF143Q) /CSM/CF/CFF1-B/CFF143Q.Seq.d/ 1241 0.0
AFM838 (AFM838Q) /CSM/AF/AFM8-B/AFM838Q.Seq.d/ 1235 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U43027|U43027.1 Dictyostelium discoideum cyclase associated protein mRNA, complete cds. 948 0.0 3
AC127847|AC127847.3 Rattus norvegicus clone CH230-199N23, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces. 46 0.59 1
AU095560|AU095560.1 Oryza sativa cDNA, partial sequence (R4076_6Z). 46 0.59 1
CA753007| (NM_119614) putative cyclase associated protein CAP [Arabidopsis, mRNA sequence. 46 0.59 1
CB660485|CB660485.1 OSJNEd02E20.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA clone OSJNEd02E20 3', mRNA sequence. 46 0.59 1
AC129698|AC129698.5 Rattus norvegicus clone CH230-10O17, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 46 2.3 2
Z97804|Z97804.1 C.familiaris mRNA; expressed sequence tag; clone CR-ESTp111. 44 2.3 1
AC125470|AC125470.3 Homo sapiens BAC clone RP13-589L22 from 4, complete sequence. 40 3.1 2
AF411980|AF411980.1 Homo sapiens Run- and FYVE-domain containing protein Rabip4R mRNA, complete cds. 40 5.1 2
AC007733|AC007733.4 Homo sapiens clone RP11-82A1, WORKING DRAFT SEQUENCE, 1 ordered pieces. 40 5.6 2
dna update 2003. 8.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54654) RecName: Full=Adenylyl cyclase-associated protein; ... 329 4e-91
AK071446_1(AK071446|pid:none) Oryza sativa Japonica Group cDNA c... 180 4e-44
AB014759_1(AB014759|pid:none) Arabidopsis thaliana mRNA for Atca... 176 6e-43
AB014884_1(AB014884|pid:none) Gossypium hirsutum GhCAP mRNA for ... 175 1e-42
EU106855_1(EU106855|pid:none) Gossypium arboreum strain DPL972 a... 175 1e-42
EU106853_1(EU106853|pid:none) Gossypium arboreum strain DPL971 a... 175 1e-42
CP001332_154(CP001332|pid:none) Micromonas sp. RCC299 chromosome... 174 2e-42
AM473414_2(AM473414|pid:none) Vitis vinifera contig VV78X268246.... 170 4e-41
AK242106_1(AK242106|pid:none) Oryza sativa Japonica Group cDNA, ... 168 2e-40
AK295600_1(AK295600|pid:none) Homo sapiens cDNA FLJ50529 complet... 166 6e-40
protein update 2009. 6.16
PSORT

psg: 0.87 gvh: 0.49 alm: 0.47 top: 0.47 tms: 0.00 mit: 0.24 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
28.0 %: nuclear
12.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for VFA148 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFA148Z
3' end seq.
>VFA148Z.Seq
----------AGATGCTAAATCTGCTACACCAGCACCAGCTTCATCAGCACCAGCCGCCC
CAGTTGCACCAGCTGTTTCATCCACTCCAGTTGAATCAAAGAAAGGTCCAGGTTTAGGTG
CAGTTTTCGGTGAACTTAGCAAAGGTGATGGTGTTACCAGTGGTTTAAAAAAAGTTACCA
ACGATATGAAATCCAAAAATTTCACCGACAAATCATCAGTTGTTAAAGCTGCTGATACTA
AAGTCGCCAAAGTTGATGCTCCATCTAGACCAGCCGTTTTTGCTCTCCAAGGTAACAAAT
GGTCCATTGAATATCAAGTTAACAACAAAGAAATTGTCATTGCCGAGCCAGATAGTCGTC
AAACTGTTTACATTTTCCAATGTGTAAACTCTTTAGTTCAAATCAAAGGTAAAGTTAATG
CAATTACTCTTGATGGTTGTAAAAAGACTTCAATCGTTTTCGAAAATGCCATTTCCTCTT
GTGAAGTTGTCAATTGTAATGGTGTTGAAATCCAAGTCACTGGTCGTGTACCATCAATTG
CTATCGATAAGACAAGTGGTTGTCAAATTTATCTCTCTAAAGATTCTTTAGAAACTGAAA
TCGTCTCTTCAAAATCATCTGAAATGAATGTTTTAATTCCAGGTGCAACNTAAAATGANA
TTTAGTNAATTAGCNATTCCAGAACAATATAAAACTTCTGTTAAAGGNAA
Length of 3' end seq. 700
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -