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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSM844
Library SS
(Link to library)
Clone ID SSM844
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14442-1
Original site URL
Representative seq. ID SSM844E
(Link to Original site)
Representative DNA sequence 
>SSM844 (SSM844Q) /CSM/SS/SSM8-B/SSM844Q.Seq.d/
AGCTGATATTACTGTTGGTAAATTTGTTTATGAAATTAGAAAGCATATGACCAAAGTTAG
TGCTGAAAAAGCCATTTATTTGTTTGTTAATAATACTATCCCACCAACTGCTGCTTTAAT
TTCTCAAATTTATGAACGTTATAAGGATGAAGATGGATTTTTATACATTACTTACAGTGG
TGAAAATACTTTTGGTAGTGATTTATAACCTATTATAATCCATGAATGTATTCATGCACT
CTGAGAGAAAGAAGACCACCAAATGTATATAGATCCAAACAATAATAGTTTGCCAAATGA
ATGGAAACTTTAATCTCTTTTAGTTATGATACTTACACAATTGTAAATCTTCTTTTTTCA
ATTTCTAAAAACAAAAAAAAAAAAACAAAAAAAAAAAAAATAAACAANCAAAAAAAAAAA
AACAAAACANAAATAACTTTTCTATTGTTTTTTTTTTTTATACATAAAAAAAAAAAAAAA
ACAAAAAAAAAAAAAATAAACAAAC
sequence update 1999. 6.28
Translated Amino Acid sequence 
s*yycw*icl*n*kaydqs*c*kshlfvc**yyptnccfnfsnl*tl*g*rwifihylqw
*kyfw**fityynp*mysctlrerrppnvyrskq**fak*METLISFSYDTYTIVNLLFS
ISKNKKKKTKKKKINXQKKKNKTXITFLLFFFFIHKKKKKTKKKKINK
Translated Amino Acid sequence (All Frames) 
Frame A:
s*yycw*icl*n*kaydqs*c*kshlfvc**yyptnccfnfsnl*tl*g*rwifihylqw
*kyfw**fityynp*mysctlrerrppnvyrskq**fak*METLISFSYDTYTIVNLLFS
ISKNKKKKTKKKKINXQKKKNKTXITFLLFFFFIHKKKKKTKKKKINK


Frame B:
aditvgkfvyeirkhmtkvsaekaiylfvnntipptaalisqiyerykdedgflyitysg
entfgsdl*piiihecihal*ekedhqmyidpnnnslpnewkl*sllvmiltql*ifffq
flktkkkkqkkkk*txkkkktkxk*lfycffflyikkkkkqkkkk*tn


Frame C:
lilllvnlfmklesi*pklvlkkpficlliilshqlll*flkfmnvirmkmdfytlltvv
killvviynll*smnvfmhserkkttkci*iqtiivcqmngnfnlf*l*ylhnckssffn
f*kqkkknkkkknkqxkkkkqnxnnfsivfffyt*kkkknkkkknkq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM844 (SSM844Q) /CSM/SS/SSM8-B/SSM844Q.Seq.d/                        726   0.0
SLB339 (SLB339Q) /CSM/SL/SLB3-B/SLB339Q.Seq.d/                        726   0.0
SSC775 (SSC775Q) /CSM/SS/SSC7-D/SSC775Q.Seq.d/                        718   0.0
VSE791 (VSE791Q) /CSM/VS/VSE7-D/VSE791Q.Seq.d/                        466   e-130
VSH508 (VSH508Q) /CSM/VS/VSH5-A/VSH508Q.Seq.d/                        281   5e-75
VSJ491 (VSJ491Q) /CSM/VS/VSJ4-D/VSJ491Q.Seq.d/                        163   3e-39
SSM570 (SSM570Q) /CSM/SS/SSM5-C/SSM570Q.Seq.d/                         42   0.008
SSA726 (SSA726Q) /CSM/SS/SSA7-B/SSA726Q.Seq.d/                         40   0.032
CHJ808 (CHJ808Q) /CSM/CH/CHJ8-A/CHJ808Q.Seq.d/                         40   0.032
CHI596 (CHI596Q) /CSM/CH/CHI5-D/CHI596Q.Seq.d/                         40   0.032
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AY191015|AY191015.1 Dictyostelium discoideum autophagy protein 8 (apg8) gene, complete cds.   351  e-105  2
AI938666|AI938666.1 sb56h11.y1 Gm-c1018 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1018-190 5' similar to TR:O80708 O80708 F8K4.23 PROTEIN. ;, mRNA sequence.    60  1e-06  2
AI778150|AI778150.1 EST259029 tomato susceptible, Cornell Lycopersicon esculentum cDNA clone cLES4I5, mRNA sequence.    46  1e-06  2
AI773758|AI773758.1 EST254858 tomato resistant, Cornell Lycopersicon esculentum cDNA clone cLER8G7, mRNA sequence.    46  1e-06  2
BM092822|BM092822.1 sah19d04.y3 Gm-c1086 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1086-1712 5' similar to TR:Q9SL04 Q9SL04 PUTATIVE MICROTUBULE-ASSOCIATED PROTEIN. ;, mRNA sequence.    60  1e-06  2
BM086397|BM086397.1 sah39e05.y1 Gm-c1036 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1036-3682 5' similar to TR:Q9SL04 Q9SL04 PUTATIVE MICROTUBULE-ASSOCIATED PROTEIN. ;, mRNA sequence.    60  2e-06  2
BE660973|BE660973.1 324 GmaxSC Glycine max cDNA, mRNA sequence.    60  2e-06  2
BU761436|BU761436.1 sas71h03.y1 Gm-c1036 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1036-9941 5' similar to TR:Q9SL04 Q9SL04 PUTATIVE MICROTUBULE-ASSOCIATED PROTEIN. ;, mRNA sequence.    60  2e-06  2
BU547998|BU547998.1 GM880014A20B03 Gm-r1088 Glycine max cDNA clone Gm-r1088-5046 3', mRNA sequence.    60  2e-06  2
AW222950|AW222950.1 EST299761 tomato fruit red ripe, TAMU Lycopersicon esculentum cDNA clone cLEN9P6, mRNA sequence.    46  2e-06  2
dna update 2003. 9.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86CR8) RecName: Full=Autophagy-related protein 8; AltName: Ful...   139   4e-32
EU935007_1(EU935007|pid:none) Acanthamoeba castellanii autophagy...   111   9e-24
AY085349_1(AY085349|pid:none) Arabidopsis thaliana clone 14759 m...   102   7e-21
(Q8LEM4) RecName: Full=Autophagy-related protein 8a; AltName: Fu...   102   7e-21
BT060763_1(BT060763|pid:none) Zea mays full-length cDNA clone ZM...   101   1e-20
CR954201_557(CR954201|pid:none) Ostreococcus tauri strain OTTH05...   101   1e-20
EU958533_1(EU958533|pid:none) Zea mays clone 1700855 unknown mRNA.    100   2e-20
(A2YS06) RecName: Full=Autophagy-related protein 8C; AltName: Fu...   100   2e-20
BT065336_1(BT065336|pid:none) Zea mays full-length cDNA clone ZM...   100   2e-20
EU971810_1(EU971810|pid:none) Zea mays clone 370920 autophagy-re...   100   2e-20
protein update 2009. 7. 9
PSORT 

 psg: 0.75  gvh: 0.48  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.68  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SSM844 is nuc
5' end seq. ID SSM844F
5' end seq. 
>SSM844F.Seq
AGCTGATATTACTGTTGGTAAATTTGTTTATGAAATTAGAAAGCATATGACCAAAGTTAG
TGCTGAAAAAGCCATTTATTTGTTTGTTAATAATACTATCCCACCAACTGCTGCTTTAAT
TTCTCAAATTTATGAACGTTATAAGGATGAAGATGGATTTTTATACATTACTTACAGTGG
TGAAAATACTTTTGGTAGTGATTTATAACCTATTATAATCCATGAATGTATTCATGCACT
CTGAGAGAAAGAAGACCACCAAATGTATATAGATCCAAACAATAATAGTTTGCCAAATGA
ATGGAAACTTTAATCTCTTTTAGTTATGATACTTACACAATTGTAAATCTTCTTTTTTCA
ATTTCTAAAAACAAAAAAAAAAAAACAAAAAAAAAAAAAATAAACAAACAAAAAAAAAAA
AACAAAACAAAAATAACTTTTCTATTGTTTTTTTTTTTTATACATAAAA----------
Length of 5' end seq. 469
3' end seq. ID SSM844Z
3' end seq. 
>SSM844Z.Seq
----------CAATTGTAAATCTTCTTTTTTCAATTTCTAAAAACAAAAAAAAAAAAACA
AAAAAAAAAAAAATAAACAAGCAAAAAAAAAAAAACAAAACATAAATAACTTTTCTATTG
TTTTTTTTTTTTATACATAAAAAAAAAAAAAAAACAAAAAAAAAAAAAATAAACAAAC
Length of 3' end seq. 168
Connected seq. ID SSM844P
Connected seq. 
>SSM844P.Seq
AGCTGATATTACTGTTGGTAAATTTGTTTATGAAATTAGAAAGCATATGACCAAAGTTAG
TGCTGAAAAAGCCATTTATTTGTTTGTTAATAATACTATCCCACCAACTGCTGCTTTAAT
TTCTCAAATTTATGAACGTTATAAGGATGAAGATGGATTTTTATACATTACTTACAGTGG
TGAAAATACTTTTGGTAGTGATTTATAACCTATTATAATCCATGAATGTATTCATGCACT
CTGAGAGAAAGAAGACCACCAAATGTATATAGATCCAAACAATAATAGTTTGCCAAATGA
ATGGAAACTTTAATCTCTTTTAGTTATGATACTTACACAATTGTAAATCTTCTTTTTTCA
ATTTCTAAAAACAAAAAAAAAAAAACAAAAAAAAAAAAAATAAACAAACAAAAAAAAAAA
AACAAAACAAAAATAACTTTTCTATTGTTTTTTTTTTTTATACATAAAA----------C
AATTGTAAATCTTCTTTTTTCAATTTCTAAAAACAAAAAAAAAAAAACAAAAAAAAAAAA
AATAAACAAGCAAAAAAAAAAAAACAAAACATAAATAACTTTTCTATTGTTTTTTTTTTT
TATACATAAAAAAAAAAAAAAAACAAAAAAAAAAAAAATAAACAAAC
Length of connected seq. 637
Full length Seq ID SSM844E
Full length Seq. 
>SSM844E.Seq
AGCTGATATTACTGTTGGTAAATTTGTTTATGAAATTAGAAAGCATATGACCAAAGTTAG
TGCTGAAAAAGCCATTTATTTGTTTGTTAATAATACTATCCCACCAACTGCTGCTTTAAT
TTCTCAAATTTATGAACGTTATAAGGATGAAGATGGATTTTTATACATTACTTACAGTGG
TGAAAATACTTTTGGTAGTGATTTATAACCTATTATAATCCATGAATGTATTCATGCACT
CTGAGAGAAAGAAGACCACCAAATGTATATAGATCCAAACAATAATAGTTTGCCAAATGA
ATGGAAACTTTAATCTCTTTTAGTTATGATACTTACACAATTGTAAATCTTCTTTTTTCA
ATTTCTAAAAACAAAAAAAAAAAAACAAAAAAAAAAAAAATAAACAANCAAAAAAAAAAA
AACAAAACANAAATAACTTTTCTATTGTTTTTTTTTTTTATACATAAAAAAAAAAAAAAA
ACAAAAAAAAAAAAAATAAACAAAC
Length of full length seq. 505