>SSM768 (SSM768Q) /CSM/SS/SSM7-C/SSM768Q.Seq.d/
XXXXXXXXXXGAAATTATTAATTTCAAATAAATTAAAAGATAGAAGAAAATGACTGATAA
TTGGGATAAAGAAAAACTTGCTAAAAAAGCAGCAGAAGGTTTAAAGAATGCCAAGAATAC
TGCATCCTCATATGCCTCTGGAATAAATGCATCAAAAGATCAATTAAATTCAAATTTCAA
AAATATTAAAGAGAACATTTCAAGCAATTTGAATAATGCCAAACATACTATTGAAGAAAA
TGTCCATAATGCTCAAAGAACCGGTTATCCACCAAAGGTACCAGCTCCTGGATCAAATAA
ATTCATTGGTTTCCTAGCTTTGGGTGTATTTGGTTTATTTGCTTGGAAATTCTATGAAGG
AAAGAAATACAAAGAGAATGAACAAAAATTAATTAAACAAAAACATTAAAAAAAAAAAAA
AAAAAAAATTTAGTTTTTGTATAAAAAAAAAACAA

---iinfk*ikr*KKMTDNWDKEKLAKKAAEGLKNAKNTASSYASGINASKDQLNSNFKN
IKENISSNLNNAKHTIEENVHNAQRTGYPPKVPAPGSNKFIGFLALGVFGLFAWKFYEGK
KYKENEQKLIKQKH*kkkkkki*flykkkt

Frame A:
---kllisnklkdrrk*liigikknllkkqqkv*rmprilhphmple*mhqkin*iqisk
ilkrtfqai*impnillkkmsimlkepvihqryqlldqinslvs*lwvylvyllgnsmke
rntkrmnkn*lnknikkkkkkkfsfcikkkq


Frame B:
---ny*fqin*kieend**lg*rktc*kssrrfkecqeyciliclwnkcikrsikfkfqk
y*rehfkqfe*cqtyy*rkcp*csknrlstkgtsswik*ihwfpsfgciwficleil*rk
eiqre*tkin*tktlkkkkkknlvfv*kkn


Frame C:
---iinfk*ikr*KKMTDNWDKEKLAKKAAEGLKNAKNTASSYASGINASKDQLNSNFKN
IKENISSNLNNAKHTIEENVHNAQRTGYPPKVPAPGSNKFIGFLALGVFGLFAWKFYEGK
KYKENEQKLIKQKH*kkkkkki*flykkkt

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM768 (SSM768Q) /CSM/SS/SSM7-C/SSM768Q.Seq.d/                        787   0.0
SSK829 (SSK829Q) /CSM/SS/SSK8-B/SSK829Q.Seq.d/                        785   0.0
SSJ861 (SSJ861Q) /CSM/SS/SSJ8-C/SSJ861Q.Seq.d/                        785   0.0
SSJ338 (SSJ338Q) /CSM/SS/SSJ3-B/SSJ338Q.Seq.d/                        785   0.0
SSI830 (SSI830Q) /CSM/SS/SSI8-B/SSI830Q.Seq.d/                        785   0.0
SSI547 (SSI547Q) /CSM/SS/SSI5-B/SSI547Q.Seq.d/                        785   0.0
SSH508 (SSH508Q) /CSM/SS/SSH5-A/SSH508Q.Seq.d/                        785   0.0
SSG891 (SSG891Q) /CSM/SS/SSG8-D/SSG891Q.Seq.d/                        785   0.0
SSG837 (SSG837Q) /CSM/SS/SSG8-B/SSG837Q.Seq.d/                        785   0.0
SSF517 (SSF517Q) /CSM/SS/SSF5-A/SSF517Q.Seq.d/                        785   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AV234950|AV234950.1 Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732401F15, 3' end partial sequence.    52  0.006  1
AF071814|AF071814.1 Streptococcus pneumoniae strain WU2 PspA (pspA) gene, partial cds.    52  0.006  1
AC123513|AC123513.1 Dictyostelium discoideum chromosome 2 map 2779865-2840915 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    36  0.043  8
AZ522713|AZ522713.1 210PbA05 Pb MBN #21 Plasmodium berghei genomic 3', DNA sequence.    42  0.054  2
BM164672|BM164672.1 EST567195 PyBS Plasmodium yoelii yoelii cDNA clone PYCLX63 5' end, mRNA sequence.    42  0.072  2
AF081801|AF081801.1 Dictyostelium discoideum developmental protein DG1098 (DG1098) gene, partial cds.    38  0.073  3
AC015646|AC015646.5 Homo sapiens chromosome 8 clone RP11-46B18 map 8, WORKING DRAFT SEQUENCE, 12 ordered pieces.    32  0.10  8
AC005825|AC005825.4 Arabidopsis thaliana chromosome 2 clone T24I21 map mi398, complete sequence.    36  0.14  6
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    36  0.16  9
BM883534|BM883534.1 rc07h09.y1 Meloidogyne hapla egg pAMP1 v1 Meloidogyne hapla cDNA 5' similar to TR:Q22017 Q22017 R53.1 PROTEIN. [1] ;, mRNA sequence.    40  0.18  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE017308_577(AE017308|pid:none) Mycoplasma mobile 163K complete ...    37   0.16
(Q80WK7) RecName: Full=Equilibrative nucleoside transporter 3; A...    35   0.62
BC078678_1(BC078678|pid:none) Rattus norvegicus solute carrier f...    35   0.62
AL844507_240(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...    35   0.81
EF145887_1(EF145887|pid:none) Populus trichocarpa clone WS0114_A...    33   3.1
CP000768_40(CP000768|pid:none) Campylobacter jejuni subsp. doyle...    33   3.1
AC116305_7(AC116305|pid:none) Dictyostelium discoideum chromosom...    33   4.0
AM458473_6(AM458473|pid:none) Vitis vinifera contig VV78X094999....    33   4.0
AL844505_83(AL844505|pid:none) Plasmodium falciparum 3D7 chromos...    33   4.0
(Q14JW6) RecName: Full=Lipid A export ATP-binding/permease prote...    32   5.3

 psg: 0.58  gvh: 0.40  alm: 0.31  top: 0.47  tms: 0.07  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: mitochondrial
	 24.0 %: nuclear
	 16.0 %: cytoplasmic
	 12.0 %: Golgi
	 12.0 %: endoplasmic reticulum
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SSM768 is mit

>SSM768Z.Seq
----------GAAATTATTAATTTCAAATAAATTAAAAGATAGAAGAAAATGACTGATAA
TTGGGATAAAGAAAAACTTGCTAAAAAAGCAGCAGAAGGTTTAAAGAATGCCAAGAATAC
TGCATCCTCATATGCCTCTGGAATAAATGCATCAAAAGATCAATTAAATTCAAATTTCAA
AAATATTAAAGAGAACATTTCAAGCAATTTGAATAATGCCAAACATACTATTGAAGAAAA
TGTCCATAATGCTCAAAGAACCGGTTATCCACCAAAGGTACCAGCTCCTGGATCAAATAA
ATTCATTGGTTTCCTAGCTTTGGGTGTATTTGGTTTATTTGCTTGGAAATTCTATGAAGG
AAAGAAATACAAAGAGAATGAACAAAAATTAATTAAACAAAAACATTAAAAAAAAAAAAA
AAAAAAAATTTAGTTTTTGTATAAAAAAAAAACAA