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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSM763
Library SS
(Link to library)
Clone ID SSM763
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16448-1
Original site URL
Representative seq. ID SSM763Z
(Link to Original site)
Representative DNA sequence 
>SSM763 (SSM763Q) /CSM/SS/SSM7-C/SSM763Q.Seq.d/
XXXXXXXXXXATACTGATTCAATTTTATATGAAGATTGGAAAACTGTTAATCAAAAAACA
ATGAATTATTTAAGAAAAATTAATTCTTCACCTTCAAAATTCACTCCAAATGGTAATCAA
ATTTGTCTTGGTCAAGTTTCAACAATTTCAACAATTGGTAGTTCAACTACAACTGCTTCA
CAATCAACAACAACAACAACAACTGGAACAGGTTCAACAACTAGTAAACCAACAACCACT
GGTGGATCAGGTTCATCAACAACTACAACTAAACCATCAACAACAACAACAACAACAACA
ACAACCACTGGTGGATCAAGTACAACTGGATCATCAAATGTTAAAGCAGTTATTAAACAA
ACTATTAGACAAACTTGGTTTGATGGTACAAATACAAATACTTTGGTTGATTGTACATTA
ACCAATCCATCAAGTAGTCCAATTCCTATTCCAAGATTTGCAATTGATAAAACTCCATCA
TCATCTTGGGAATTGAATTTAGTTAGTTCAAATATTGTTTCATTTACAAGTTGGAATAAC
CAAATTAGTCCTGGTCAAACTTTATCATTTGGTTATATTGTTTCTAGTAGTACTGTAATT
ACATTTACTCAAATTTAAAAAAAAAAAAA
sequence update 1998. 3.15
Translated Amino Acid sequence 
---TDSILYEDWKTVNQKTMNYLRKINSSPSKFTPNGNQICLGQVSTISTIGSSTTTASQ
STTTTTTGTGSTTSKPTTTGGSGSSTTTTKPSTTTTTTTTTTGGSSTTGSSNVKAVIKQT
IRQTWFDGTNTNTLVDCTLTNPSSSPIPIPRFAIDKTPSSSWELNLVSSNIVSFTSWNNQ
ISPGQTLSFGYIVSSSTVITFTQI*kkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---y*fnfi*rlenc*sknnelfkkn*fftfkihskw*snlswssfnnfnnw*fnyncft
innnnnnwnrfnn**tnnhwwirfinnyn*tinnnnnnnnnhwwikynwiikc*ssy*tn
y*tnlv*wykykyfg*lyinqsik*snsyskicn**nsiiilgiefs*fkycfiykle*p
n*swsnfiiwlycf**ycnyiysnlkkkk


Frame B:
---TDSILYEDWKTVNQKTMNYLRKINSSPSKFTPNGNQICLGQVSTISTIGSSTTTASQ
STTTTTTGTGSTTSKPTTTGGSGSSTTTTKPSTTTTTTTTTTGGSSTTGSSNVKAVIKQT
IRQTWFDGTNTNTLVDCTLTNPSSSPIPIPRFAIDKTPSSSWELNLVSSNIVSFTSWNNQ
ISPGQTLSFGYIVSSSTVITFTQI*kkk


Frame C:
---liqfymkigkllikkq*ii*eklilhlqnslqmvikfvlvkfqqfqqlvvqlqllhn
qqqqqqleqvqqlvnqqplvdqvhqqlqlnhqqqqqqqqqplvdqvqldhqmlkqllnkl
ldklglmvqiqilwlivh*pihqvvqflfqdlqliklhhhlgn*i*lvqilfhlqvgitk
lvlvklyhlvilflvvl*lhllkfkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM763 (SSM763Q) /CSM/SS/SSM7-C/SSM763Q.Seq.d/                        617   e-176
SSK593 (SSK593Q) /CSM/SS/SSK5-D/SSK593Q.Seq.d/                        617   e-176
SSI526 (SSI526Q) /CSM/SS/SSI5-B/SSI526Q.Seq.d/                        617   e-176
SSI228 (SSI228Q) /CSM/SS/SSI2-B/SSI228Q.Seq.d/                        617   e-176
SSI120 (SSI120Q) /CSM/SS/SSI1-A/SSI120Q.Seq.d/                        617   e-176
SSH762 (SSH762Q) /CSM/SS/SSH7-C/SSH762Q.Seq.d/                        617   e-176
SSG285 (SSG285Q) /CSM/SS/SSG2-D/SSG285Q.Seq.d/                        617   e-176
SSG235 (SSG235Q) /CSM/SS/SSG2-B/SSG235Q.Seq.d/                        617   e-176
SSG191 (SSG191Q) /CSM/SS/SSG1-D/SSG191Q.Seq.d/                        617   e-176
SSF613 (SSF613Q) /CSM/SS/SSF6-A/SSF613Q.Seq.d/                        617   e-176
own update 2001.11.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC090051|AC090051.8 Homo sapiens 12q BAC RP11-467E3 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    54  0.018  3
M18162|M18162.1 Pea PSL3 lectin pseudogene.                       44  0.035  2
BU367499|BU367499.1 603784480F1 CSEQCHN72 Gallus gallus cDNA clone ChEST738o19 5', mRNA sequence.    48  0.13  1
AC143356|AC143356.1 Pan troglodytes chromosome 7 clone RP43-64A13, complete sequence.    38  0.26  4
AC132086|AC132086.2 Mus musculus chromosome UNK clone RP24-556M16, WORKING DRAFT SEQUENCE, 2 unordered pieces.    38  0.39  4
AF102955|AF102955.1 Pelvetia canaliculata country Isle of Man 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.    46  0.52  1
AF102953|AF102953.1 Pelvetia canaliculata country Norway 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence.    46  0.52  1
AF102954|AF102954.1 Pelvetia canaliculata country Portugal 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence.    46  0.52  1
U39645|U39645.1 Caenorhabditis elegans cosmid C14F11.    40  1.3  2
AX573242|AX573242.1 Sequence 88 from Patent WO02074992.           38  1.9  4
dna update 2003. 8.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116977_84(AC116977|pid:none) Dictyostelium discoideum chromoso...    50   5e-05
(P14768) RecName: Full=Endo-1,4-beta-xylanase A;          Short=...    43   0.006
(P22698) RecName: Full=Spore germination protein 270-11;  &B3562...    41   0.032
CP000934_2552(CP000934|pid:none) Cellvibrio japonicus Ueda107, c...    38   0.21
CP000282_2268(CP000282|pid:none) Saccharophagus degradans 2-40, ...    38   0.21
AB110082_1(AB110082|pid:none) Bacillus ehimensis gene for chitin...    38   0.27
CP000934_3210(CP000934|pid:none) Cellvibrio japonicus Ueda107, c...    37   0.46
T18270(T18270) hypothetical protein - slime mold (Dictyostelium ...    37   0.60
AF054615_1(AF054615|pid:none) Fragaria x ananassa cellulase (Cel...    36   0.79
CP000282_2307(CP000282|pid:none) Saccharophagus degradans 2-40, ...    36   0.79
protein update 2009. 2. 4
PSORT 

 psg: 0.75  gvh: 0.50  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for SSM763 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSM763Z
3' end seq. 
>SSM763Z.Seq
----------ATACTGATTCAATTTTATATGAAGATTGGAAAACTGTTAATCAAAAAACA
ATGAATTATTTAAGAAAAATTAATTCTTCACCTTCAAAATTCACTCCAAATGGTAATCAA
ATTTGTCTTGGTCAAGTTTCAACAATTTCAACAATTGGTAGTTCAACTACAACTGCTTCA
CAATCAACAACAACAACAACAACTGGAACAGGTTCAACAACTAGTAAACCAACAACCACT
GGTGGATCAGGTTCATCAACAACTACAACTAAACCATCAACAACAACAACAACAACAACA
ACAACCACTGGTGGATCAAGTACAACTGGATCATCAAATGTTAAAGCAGTTATTAAACAA
ACTATTAGACAAACTTGGTTTGATGGTACAAATACAAATACTTTGGTTGATTGTACATTA
ACCAATCCATCAAGTAGTCCAATTCCTATTCCAAGATTTGCAATTGATAAAACTCCATCA
TCATCTTGGGAATTGAATTTAGTTAGTTCAAATATTGTTTCATTTACAAGTTGGAATAAC
CAAATTAGTCCTGGTCAAACTTTATCATTTGGTTATATTGTTTCTAGTAGTACTGTAATT
ACATTTACTCAAATTTAAAAAAAAAAAAA
Length of 3' end seq. 619
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -