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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSM731
Library SS
(Link to library)
Clone ID SSM731
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15950-1
Original site URL
Representative seq. ID SSM731P
(Link to Original site)
Representative DNA sequence 
>SSM731 (SSM731Q) /CSM/SS/SSM7-B/SSM731Q.Seq.d/
TTTATTGTTAAAGATATTAATTTTTCATTACCAAGACAAATTGCAGTTTCAATTCCACAT
TATAATCTAAGAAAAGCTTATAATTCATTTAAAAAGAGTTGGGGTGAATATATTTATGAA
TGTACATTTGAAACTGAATTATTTAAAGAATTAATTATCCGTAGTGAAAACTTTTCAAAT
GAAATTTTCTCACCATTTGATTCAGCTCCATTGGTACCAGATCAAGAAAAGAAAGCAGAA
GCAACCGCTGAAGCCGTTTCAAATAGTCGTACAAGTCGTACTGTTAAAGAATTTTTAAAA
TCAATCAATTGGTTACATGTTATCATTTTAATTGGTATTCCATTCATTGGTCTCTATGGT
CTAATTAATGTAGAGTGTTCATTGAAAACATTTATTTGGTCATTTATTTATTATCATTTC
ACTGGTATGGGTATTACAGCAGGTTATCATAGACTTTGGGCTCATAAGGCTTATAGTGCA
GTTTTACCAGTTCGTATTATCTTGTTGCTATTTGGTGCAGGTGCTGTCGAAGGTTCATGT
CGTTGGTGGTCAAGAGATCATCGTGCTCATCATCGTTATCTCGATACTGATAAAGATCCA
TATTCAGCTTCATTGGGTTTCTGGCATTCCCATTTCATTTGGTTAATGTTCAAACAAGAT
CCAAAGAAAATCGGTAGAGCAAACATTGACGACCTTAACGCCGATCCATGGXXXXXXXXX
XTTCAAATGCACCAAAAACATTTAGACGCAAAGAAACAATCAATCTATTGGGGTATCAAT
AAAGAAGATTTACCATCAATGACAATCGATGAATTTAATAATTTGGTTGAAAAAGAAAAT
AAAAAGTTAATGATAATCAACAAAACCGTATTAGATGTCGAATCTTTTGTTAATGATCAC
CCNNGTGGTTTAGCTTACATTAAAATGGGTATTGGTAAAGATGCAACTTCAATGTTTACT
GGTGAAGTTTATGCTCATTCAAATGCTGCTAAAAATTTATTATGTCAATTTTCAATTGCT
AAAATTGTTGATAATCATGATAAAAAACAACAATAATCAAAAAAACAAACAACTTTTAAA
ATTGGATTAAACCCCTAATTTTAATTTAATTAAGTTTATAATATTTTTAAATATTATATA
ATTTAGTTCACTCAAAAATCAATATTCAATAATAATTTTTTTATCTATATATCCAATAAT
TTTTTTTTTCTATTTTTTCTTTATTTTCACAATTCATAATAATTATAACAAAACAAA
sequence update 1998.12. 3
Translated Amino Acid sequence 
FIVKDINFSLPRQIAVSIPHYNLRKAYNSFKKSWGEYIYECTFETELFKELIIRSENFSN
EIFSPFDSAPLVPDQEKKAEATAEAVSNSRTSRTVKEFLKSINWLHVIILIGIPFIGLYG
LINVECSLKTFIWSFIYYHFTGMGITAGYHRLWAHKAYSAVLPVRIILLLFGAGAVEGSC
RWWSRDHRAHHRYLDTDKDPYSASLGFWHSHFIWLMFKQDPKKIGRANIDDLNADPW---

---QMHQKHLDAKKQSIYWGINKEDLPSMTIDEFNNLVEKENKKLMIINKTVLDVESFVN
DHPXGLAYIKMGIGKDATSMFTGEVYAHSNAAKNLLCQFSIAKIVDNHDKKQQ*skkqtt
fkiglnp*f*fn*vynifkyyii*ftqksifnnnffiyisnnffflfflyfhns**l*qn
k
Translated Amino Acid sequence (All Frames) 
Frame A:
FIVKDINFSLPRQIAVSIPHYNLRKAYNSFKKSWGEYIYECTFETELFKELIIRSENFSN
EIFSPFDSAPLVPDQEKKAEATAEAVSNSRTSRTVKEFLKSINWLHVIILIGIPFIGLYG
LINVECSLKTFIWSFIYYHFTGMGITAGYHRLWAHKAYSAVLPVRIILLLFGAGAVEGSC
RWWSRDHRAHHRYLDTDKDPYSASLGFWHSHFIWLMFKQDPKKIGRANIDDLNADPW---

---fkctkni*tqrnnqsigvsikkiyhq*qsmnliiwlkkkiks***stkpy*msnlll
mitxvv*ltlkwvlvkmqlqcllvkfmliqmllkiyyvnfqllklliimiknnnnqknkq
llkld*tpnfnlikfiiflnii*fsslknqysiiiflsiypiifffyfffiftihnnynk
t

Frame B:
lllkilifhyqdklqfqfhiii*ekliihlkrvgvnifmnvhlklnylkn*lsvvktfqm
kfshhliqlhwyqikkrkqkqplkpfqivvqvvllknf*nqsigymlsf*lvfhslvsmv
*lm*svh*khlfghlfiiislvwvlqqviidfglirlivqfyqfvlsccylvqvlskvhv
vggqeiivliivisilikihiqlhwvsgipisfg*csnkiqrksveqtlttltpih---

---snapktfrrketinllgyq*rrftindnr*i**fg*krk*kvndnqqnrircrifc*
*spxwfslh*ngyw*rcnfnvyw*slcsfkcc*kfimsifnc*nc**s**kttiikktnn
f*nwikplili*lsl*yf*ilynlvhskiniq**ffylyiq*fffsifslfsqfiiiitk
q

Frame C:
yc*ry*ffitktncsfnstl*skksl*fi*kelg*iyl*myi*n*ii*rinyp**klfk*
nflti*fssigtrsrkesrsnr*srfk*syksyc*rifkinqlvtcyhfnwysihwslws
n*crvfieniylviyllsfhwygyysrls*tlgs*gl*csftssyylvaiwcrccrrfms
lvvkrsscssslsry**rsifsfigflafpfhlvnvqtrskenr*skh*rp*rrsm---

---QMHQKHLDAKKQSIYWGINKEDLPSMTIDEFNNLVEKENKKLMIINKTVLDVESFVN
DHPXGLAYIKMGIGKDATSMFTGEVYAHSNAAKNLLCQFSIAKIVDNHDKKQQ*skkqtt
fkiglnp*f*fn*vynifkyyii*ftqksifnnnffiyisnnffflfflyfhns**l*qn
k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM731 (SSM731Q) /CSM/SS/SSM7-B/SSM731Q.Seq.d/                       1584   0.0
VHD210 (VHD210Q) /CSM/VH/VHD2-A/VHD210Q.Seq.d/                        858   0.0
VFB582 (VFB582Q) /CSM/VF/VFB5-D/VFB582Q.Seq.d/                        777   0.0
VFM622 (VFM622Q) /CSM/VF/VFM6-A/VFM622Q.Seq.d/                        720   0.0
FC-AD05 (FC-AD05Q) /CSM/FC/FC-AD/FC-AD05Q.Seq.d/                      648   0.0
VHK887 (VHK887Q) /CSM/VH/VHK8-D/VHK887Q.Seq.d/                        617   e-175
VHP282 (VHP282Q) /CSM/VH/VHP2-D/VHP282Q.Seq.d/                        613   e-174
VHF376 (VHF376Q) /CSM/VH/VHF3-D/VHF376Q.Seq.d/                        531   e-150
VHP359 (VHP359Q) /CSM/VH/VHP3-C/VHP359Q.Seq.d/                        484   e-135
VHI633 (VHI633Q) /CSM/VH/VHI6-B/VHI633Q.Seq.d/                        472   e-132
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.  1409  0.0  11
AL115898|AL115898.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    44  2e-04  2
AL114909|AL114909.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    44  2e-04  2
AL116230|AL116230.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    44  2e-04  2
AZ534205|AZ534205.1 ENTBX58TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    42  0.012  2
AZ692874|AZ692874.1 ENTLG34TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    42  0.012  2
AC004240|AC004240.1 Homo sapiens BAC clone CTA-363I12 from 7q31, complete sequence.    36  0.22  4
AE002102|AE002102.1 Ureaplasma urealyticum section 3 of 59 of the complete genome.    32  0.35  5
BH152735|BH152735.1 ENTPG09TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    34  0.37  3
AX347098|AX347098.1 Sequence 2169 from Patent WO0200928.          34  0.40  5
dna update 2003. 8.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116984_117(AC116984|pid:none) Dictyostelium discoideum chromos...   499   e-140
AM920435_140(AM920435|pid:none) Penicillium chrysogenum Wisconsi...   198   4e-49
AF510861_1(AF510861|pid:none) Emericella nidulans stearic acid d...   194   6e-48
AP007151_392(AP007151|pid:none) Aspergillus oryzae RIB40 genomic...   190   1e-46
EU857727_1(EU857727|pid:none) Hortaea werneckii delta-9 desatura...   186   2e-45
(Q12618) RecName: Full=Acyl-CoA desaturase;          EC=1.14.19....   185   3e-45
AY576801_1(AY576801|pid:none) Hortaea werneckii putative delta-9...   185   3e-45
S52746(S52746;S52745) stearoyl-CoA 9-desaturase (EC 1.14.19.1) [...   183   1e-44
DQ901954_1(DQ901954|pid:none) Aureobasidium pullulans putative d...   179   2e-43
Y18554_1(Y18554|pid:none) Mortierella alpina ole2 gene for stear...   176   1e-42
protein update 2009. 6.16
PSORT 

 psg: 0.64  gvh: 0.28  alm: 0.25  top: 0.40  tms: 0.13  mit: 0.31  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 24.0 %: mitochondrial
	 24.0 %: plasma membrane
	  8.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal
	  4.0 %: cytoplasmic

>> prediction for SSM731 is end
5' end seq. ID SSM731F
5' end seq. 
>SSM731F.Seq
TTTATTGTTAAAGATATTAATTTTTCATTACCAAGACAAATTGCAGTTTCAATTCCACAT
TATAATCTAAGAAAAGCTTATAATTCATTTAAAAAGAGTTGGGGTGAATATATTTATGAA
TGTACATTTGAAACTGAATTATTTAAAGAATTAATTATCCGTAGTGAAAACTTTTCAAAT
GAAATTTTCTCACCATTTGATTCAGCTCCATTGGTACCAGATCAAGAAAAGAAAGCAGAA
GCAACCGCTGAAGCCGTTTCAAATAGTCGTACAAGTCGTACTGTTAAAGAATTTTTAAAA
TCAATCAATTGGTTACATGTTATCATTTTAATTGGTATTCCATTCATTGGTCTCTATGGT
CTAATTAATGTAGAGTGTTCATTGAAAACATTTATTTGGTCATTTATTTATTATCATTTC
ACTGGTATGGGTATTACAGCAGGTTATCATAGACTTTGGGCTCATAAGGCTTATAGTGCA
GTTTTACCAGTTCGTATTATCTTGTTGCTATTTGGTGCAGGTGCTGTCGAAGGTTCATGT
CGTTGGTGGTCAAGAGATCATCGTGCTCATCATCGTTATCTCGATACTGATAAAGATCCA
TATTCAGCTTCATTGGGTTTCTGGCATTCCCATTTCATTTGGTTAATGTTCAAACAAGAT
CCAAAGAAAATCGGTAGAGCAAACATTGACGACCTTAACGCCGATCCATGG---------
-
Length of 5' end seq. 711
3' end seq. ID SSM731Z
3' end seq. 
>SSM731Z.Seq
----------TTCAAATGCACCAAAAACATTTAGACGCAAAGAAACAATCAATCTATTGG
GGTATCAATAAAGAAGATTTACCATCAATGACAATCGATGAATTTAATAATTTGGTTGAA
AAAGAAAATAAAAAGTTAATGATAATCAACAAAACCGTATTAGATGTCGAATCTTTTGTT
AATGATCACCCNNGTGGTTTAGCTTACATTAAAATGGGTATTGGTAAAGATGCAACTTCA
ATGTTTACTGGTGAAGTTTATGCTCATTCAAATGCTGCTAAAAATTTATTATGTCAATTT
TCAATTGCTAAAATTGTTGATAATCATGATAAAAAACAACAATAATCAAAAAAACAAACA
ACTTTTAAAATTGGATTAAACCCCTAATTTTAATTTAATTAAGTTTATAATATTTTTAAA
TATTATATAATTTAGTTCACTCAAAAATCAATATTCAATAATAATTTTTTTATCTATATA
TCCAATAATTTTTTTTTTCTATTTTTTCTTTATTTTCACAATTCATAATAATTATAACAA
AACAAA
Length of 3' end seq. 536
Connected seq. ID SSM731P
Connected seq. 
>SSM731P.Seq
TTTATTGTTAAAGATATTAATTTTTCATTACCAAGACAAATTGCAGTTTCAATTCCACAT
TATAATCTAAGAAAAGCTTATAATTCATTTAAAAAGAGTTGGGGTGAATATATTTATGAA
TGTACATTTGAAACTGAATTATTTAAAGAATTAATTATCCGTAGTGAAAACTTTTCAAAT
GAAATTTTCTCACCATTTGATTCAGCTCCATTGGTACCAGATCAAGAAAAGAAAGCAGAA
GCAACCGCTGAAGCCGTTTCAAATAGTCGTACAAGTCGTACTGTTAAAGAATTTTTAAAA
TCAATCAATTGGTTACATGTTATCATTTTAATTGGTATTCCATTCATTGGTCTCTATGGT
CTAATTAATGTAGAGTGTTCATTGAAAACATTTATTTGGTCATTTATTTATTATCATTTC
ACTGGTATGGGTATTACAGCAGGTTATCATAGACTTTGGGCTCATAAGGCTTATAGTGCA
GTTTTACCAGTTCGTATTATCTTGTTGCTATTTGGTGCAGGTGCTGTCGAAGGTTCATGT
CGTTGGTGGTCAAGAGATCATCGTGCTCATCATCGTTATCTCGATACTGATAAAGATCCA
TATTCAGCTTCATTGGGTTTCTGGCATTCCCATTTCATTTGGTTAATGTTCAAACAAGAT
CCAAAGAAAATCGGTAGAGCAAACATTGACGACCTTAACGCCGATCCATGG---------
-TTCAAATGCACCAAAAACATTTAGACGCAAAGAAACAATCAATCTATTGGGGTATCAAT
AAAGAAGATTTACCATCAATGACAATCGATGAATTTAATAATTTGGTTGAAAAAGAAAAT
AAAAAGTTAATGATAATCAACAAAACCGTATTAGATGTCGAATCTTTTGTTAATGATCAC
CCNNGTGGTTTAGCTTACATTAAAATGGGTATTGGTAAAGATGCAACTTCAATGTTTACT
GGTGAAGTTTATGCTCATTCAAATGCTGCTAAAAATTTATTATGTCAATTTTCAATTGCT
AAAATTGTTGATAATCATGATAAAAAACAACAATAATCAAAAAAACAAACAACTTTTAAA
ATTGGATTAAACCCCTAATTTTAATTTAATTAAGTTTATAATATTTTTAAATATTATATA
ATTTAGTTCACTCAAAAATCAATATTCAATAATAATTTTTTTATCTATATATCCAATAAT
TTTTTTTTTCTATTTTTTCTTTATTTTCACAATTCATAATAATTATAACAAAACAAA
Length of connected seq. 1247
Full length Seq ID -
Full length Seq. -
Length of full length seq. -