SSM729
Library SS
(Link to library)
Clone ID SSM729
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U02317-1
Original site URL
Representative seq. ID SSM729F
(Link to Original site)
Representative DNA sequence
>SSM729 (SSM729Q) /CSM/SS/SSM7-B/SSM729Q.Seq.d/
TAATCATATATAAAAGCTAAAAATAAAAAAAAAAAATTTTAAAAAAAAATTAAAAAATTA
AGAACAAAAAAAAAAAATAAAAGGATGTCTTGGAGAGCATTATTATCACACAACTTACAA
GAAATTAGAATTACATTTTGTCAATCCAATCAAAGTAGTGAAGGTTTGAGAAACTTTGTT
GTAAAGAATTACTCTGATTTAAAAAGATTAAATCCAAAATTACCATTACTCATTCGTGAA
GGTCATGGTGTTGAACCAGTAATTTACGCTCGTTATGATTGGGGTAAAGAAGAAAAGAAA
GTTGTTACTAATTTAACCGAACAAGAAGTTGAAGAGAAATTAAAAGAATTATGTTTAATG
GGTAGTAAATTCGATAAATCACCAGAAAGTGAATTTGATGAAGTTGATATCGTATCTGCT
TATCAAAAACCAATTTTAAATTATAGACCAATTTTTTAGATAAAATCGAACGTGTCATAT
AATTAATAAATAXXXXXXXXXX
sequence update 1998.12. 3
Translated Amino Acid sequence
*syikaknkkkkf*KKIKKLRTKKKNKRMSWRALLSHNLQEIRITFCQSNQSSEGLRNFV
VKNYSDLKRLNPKLPLLIREGHGVEPVIYARYDWGKEEKKVVTNLTEQEVEEKLKELCLM
GSKFDKSPESEFDEVDIVSAYQKPILNYRPIF*iksnvsyn**---


Translated Amino Acid sequence (All Frames)
Frame A:
*syikaknkkkkf*KKIKKLRTKKKNKRMSWRALLSHNLQEIRITFCQSNQSSEGLRNFV
VKNYSDLKRLNPKLPLLIREGHGVEPVIYARYDWGKEEKKVVTNLTEQEVEEKLKELCLM
GSKFDKSPESEFDEVDIVSAYQKPILNYRPIF*iksnvsyn**---


Frame B:
nhi*klkikkknfkkklkn*eqkkkikgclgehyyhttykklelhfvnpikvvkv*etll
*ritli*kd*iqnyhysfvkvmvlnq*ftlvmigvkkkrkllli*pnkklkrn*knyv*w
vvnsinhqkvnlmklisylliknqf*iidqffr*nrtchiink---


Frame C:
iiyks*k*kkkilkkn*kiknkkkk*kdvlesiiitqltrn*nyilsiqsk**rfeklcc
kell*fkkikskitiths*rswc*tsnlrsl*lg*rrkescy*fnrtrs*reikrimfng
**ir*itrk*i**s*yriclsktnfkl*tnfldkiervi*lin---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSM729 (SSM729Q) /CSM/SS/SSM7-B/SSM729Q.Seq.d/ 823 0.0
SSJ681 (SSJ681Q) /CSM/SS/SSJ6-D/SSJ681Q.Seq.d/ 813 0.0
VSK277 (VSK277Q) /CSM/VS/VSK2-D/VSK277Q.Seq.d/ 811 0.0
VSJ611 (VSJ611Q) /CSM/VS/VSJ6-A/VSJ611Q.Seq.d/ 807 0.0
SSM635 (SSM635Q) /CSM/SS/SSM6-B/SSM635Q.Seq.d/ 743 0.0
SSB385 (SSB385Q) /CSM/SS/SSB3-D/SSB385Q.Seq.d/ 553 e-157
SSB550 (SSB550Q) /CSM/SS/SSB5-C/SSB550Q.Seq.d/ 523 e-148
VSB476 (VSB476Q) /CSM/VS/VSB4-D/VSB476Q.Seq.d/ 297 8e-80
VSF690 (VSF690Q) /CSM/VS/VSF6-D/VSF690Q.Seq.d/ 38 0.12
CHQ296 (CHQ296Q) /CSM/CH/CHQ2-D/CHQ296Q.Seq.d/ 38 0.12

own update 2002.12.14
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 420 0.0 3
AC136664|AC136664.2 Rattus norvegicus clone CH230-229G9, WORKING DRAFT SEQUENCE, 3 unordered pieces. 48 0.10 1
AE016955|AE016955.1 Enterococcus faecalis V583, section 9 of 11 of the complete genome. 34 1.5 7
AE003625|AE003625.2 Drosophila melanogaster chromosome 2L section 34 of 83 of the complete sequence. 44 1.6 1
AW571255|AW571255.1 ra16b04.y2 Bird-Rao Meloidogyne incognita J2 Meloidogyne incognita cDNA 5', mRNA sequence. 44 1.6 1
AC021774|AC021774.3 Homo sapiens clone RP11-13C18, WORKING DRAFT SEQUENCE, 10 unordered pieces. 44 1.6 1
AC011836|AC011836.3 Homo sapiens chromosome 11 clone RP11-151J24 map 11, WORKING DRAFT SEQUENCE, 8 unordered pieces. 44 1.6 1
AC020262|AC020262.1 Drosophila melanogaster, *** SEQUENCING IN PROGRESS ***, in ordered pieces. 44 1.6 1
AW570934|AW570934.1 ra13a02.y1 Bird-Rao Meloidogyne incognita J2 Meloidogyne incognita cDNA 5', mRNA sequence. 44 1.6 1
BM880766|BM880766.1 rb18a09.y1 Meloidogyne incognita egg pAMP1 Bird Meloidogyne incognita cDNA 5', mRNA sequence. 44 1.6 1
dna update 2003. 8.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116963_90(AC116963|pid:none) Dictyostelium discoideum chromoso... 251 9e-66
EF144500_1(EF144500|pid:none) Populus trichocarpa clone PX0019_N... 101 9e-21
BT071647_1(BT071647|pid:none) Picea sitchensis clone WS0294_D08 ... 99 6e-20
EU965985_1(EU965985|pid:none) Zea mays clone 290586 NADH-ubiquin... 99 6e-20
EU963095_1(EU963095|pid:none) Zea mays clone 257497 NADH-ubiquin... 99 7e-20
EF146609_1(EF146609|pid:none) Populus trichocarpa clone WS01210_... 98 1e-19
AY347482_1(AY347482|pid:none) Chlamydomonas reinhardtii NADH:ubi... 93 4e-18
AB016886_23(AB016886|pid:none) Arabidopsis thaliana genomic DNA,... 92 9e-18
BC135400_1(BC135400|pid:none) Xenopus tropicalis hypothetical pr... 84 1e-15
AM270279_15(AM270279|pid:none) Aspergillus niger contig An12c023... 83 3e-15
protein update 2009. 6.16
PSORT

psg: 0.44 gvh: 0.45 alm: 0.51 top: 0.53 tms: 0.00 mit: 0.43 mip: 0.06
nuc: 0.12 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
32.0 %: mitochondrial
20.0 %: cytoplasmic
4.0 %: vesicles of secretory system

>> prediction for SSM729 is nuc

5' end seq. ID SSM729F
5' end seq.
>SSM729F.Seq
TAATCATATATAAAAGCTAAAAATAAAAAAAAAAAATTTTAAAAAAAAATTAAAAAATTA
AGAACAAAAAAAAAAAATAAAAGGATGTCTTGGAGAGCATTATTATCACACAACTTACAA
GAAATTAGAATTACATTTTGTCAATCCAATCAAAGTAGTGAAGGTTTGAGAAACTTTGTT
GTAAAGAATTACTCTGATTTAAAAAGATTAAATCCAAAATTACCATTACTCATTCGTGAA
GGTCATGGTGTTGAACCAGTAATTTACGCTCGTTATGATTGGGGTAAAGAAGAAAAGAAA
GTTGTTACTAATTTAACCGAACAAGAAGTTGAAGAGAAATTAAAAGAATTATGTTTAATG
GGTAGTAAATTCGATAAATCACCAGAAAGTGAATTTGATGAAGTTGATATCGTATCTGCT
TATCAAAAACCAATTTTAAATTATAGACCAATTTTTTAGATAAAATCGAACGTGTCATAT
AATTAATAAATA----------
Length of 5' end seq. 492
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -