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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSM722
Library SS
(Link to library)
Clone ID SSM722
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14943-1
Original site URL
Representative seq. ID SSM722E
(Link to Original site)
Representative DNA sequence 
>SSM722 (SSM722Q) /CSM/SS/SSM7-A/SSM722Q.Seq.d/
ACTATGTTAAATGGTGCAGCAGTTATGGATGCAGCTCTTTTATTGATTGCAGGTAATGAA
TCATGTCCACAACCACAAACTAGTGAACACATTGCAGCTATTGAAATTATGAATCTTAAA
AATATTATCATTCTTCAAAATAAGATTGATTTGGTAAAGGAAGCAGCAGCACAAGAACAA
TATGGTCAAATTTTGAAATTGATTCAAGGTACAATCGCAGAGAATGCACCAATCATTCCA
ATCTCTGCTCAAATGAAATACAATATCGATGTCATTTGTGAATACATTGTTAAAAAGATT
CCAATCCCAGTTAGAGATTTTACATCAGATCCACGTATGATCGTTATTCGTTCATTCGAT
GTCAATAAACCAGGTTCTCGTGTTGATGACATTAAAGGTGGTGTTGCTGGTGGTTCAATC
TTGAAGGGTGTATTAAAGATTGGCGATGAAATCGAAGAGGTGTTATCAGTAAGGAATTGG
ATGGTAAAATCAAATGTTCCCCAATCTTCTCTAGAATTATCTCTCTCTTTGCTGAAGAGA
ATGAACTTCAATACGCTGTACCAGGTGGTTTAATTGGTGTTGGTACAAAGATCGATCCAA
CCCTTTGCAGAGCTGATCGTTTGGTTGGTCAAGTTGTTTTAGGTTCAGTCGGTAAATTAC
CAGAAATTTTCGTCGCTCTCGAAGTTAACTTTTTCCTCTTACGTAGACTTTTAGGTGTTA
AATCCGATGGTGATAAACAAAGTAAAGTTAAAAAATTATCCAAAGAAGATACCCTTATGG
TTAACATTGGTTCAACTAGTACTGGTTGTCGTGTCGTCGCTGTTAAACATGATTTAGCTA
AACTTCAACTTTTAACTCCAGTTTGTTCTCAAGAAGGTGAAAAAATCGCTTTATCAAGAA
GAGTCGATAAAAATTGGAGACTTATTGGTTGGGGTGAAATTAAAAAAGGTACCGTTCTCA
CTAATTAATCGAAAAATAATAATGCATTCAATTTAACTTAATGAAACATGTAATTTTCAA
AAAAT
sequence update 1999. 4.21
Translated Amino Acid sequence 
TMLNGAAVMDAALLLIAGNESCPQPQTSEHIAAIEIMNLKNIIILQNKIDLVKEAAAQEQ
YGQILKLIQGTIAENAPIIPISAQMKYNIDVICEYIVKKIPIPVRDFTSDPRMIVIRSFD
VNKPGSRVDDIKGGVAGGSILKGVLKIGDEIEEVLSVRNWMVKSNVPQSSLELSLSLLKR
MNFNTLYQVV*lvlvqrsiqpfaelivwlvklf*vqsvnyqkfsslskltfssyvdf*vl
npmvinkvklknypkkiplwltlvqlvlvvvssllnmi*lnfnf*lqfvlkkvkkslyqe
esikigdllvgvklkkvpfslinrkiimhsi*lnetcnfqk
Translated Amino Acid sequence (All Frames) 
Frame A:
TMLNGAAVMDAALLLIAGNESCPQPQTSEHIAAIEIMNLKNIIILQNKIDLVKEAAAQEQ
YGQILKLIQGTIAENAPIIPISAQMKYNIDVICEYIVKKIPIPVRDFTSDPRMIVIRSFD
VNKPGSRVDDIKGGVAGGSILKGVLKIGDEIEEVLSVRNWMVKSNVPQSSLELSLSLLKR
MNFNTLYQVV*lvlvqrsiqpfaelivwlvklf*vqsvnyqkfsslskltfssyvdf*vl
npmvinkvklknypkkiplwltlvqlvlvvvssllnmi*lnfnf*lqfvlkkvkkslyqe
esikigdllvgvklkkvpfslinrkiimhsi*lnetcnfqk


Frame B:
lc*mvqqlwmqlfy*lqvmnhvhnhklvntlqllkl*ilkilsffkirliw*rkqqhknn
mvkf*n*fkvqsqrmhqsfqsllk*ntismsfvntllkrfqsqleilhqihv*slfvhsm
sinqvlvlmtlkvvllvvqs*rvy*rlamkskrcyq*gigw*nqmfpnll*nylslc*re
*tsirctrwfnwcwykdrsnplqs*sfgwsscfrfsr*itrnfrrsrs*lfplt*tfrc*
irw**tk*s*kiiqrrypyg*hwfn*ywlscrrc*t*fs*tstfnsslfsrr*knrfikk
sr*kletywlg*n*kryrsh*liek**ciqfnlmkhvifkk


Frame C:
yvkwcssygcssfidcr**imstttn**thcsy*nyes*kyyhssk*d*fgkgssstrti
wsnfeidsrynrrectnhsnlcsneiqyrchl*ihc*kdsnps*rfyirstydrysfirc
q*trfsc**h*rwccwwfnlegcikdwr*nrrgviskeldgkikcspifsriislfaeen
elqyavpggligvgtkidptlcradrlvgqvvlgsvgklpeifvalevnffllrrllgvk
sdgdkqskvkklskedtlmvnigststgcrvvavkhdlaklqlltpvcsqegekialsrr
vdknwrligwgeikkgtvltn*sknnnafnlt**nm*fskn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM722 (SSM722Q) /CSM/SS/SSM7-A/SSM722Q.Seq.d/                       2032   0.0
SLH658 (SLH658Q) /CSM/SL/SLH6-C/SLH658Q.Seq.d/                       1945   0.0
VFG614 (VFG614Q) /CSM/VF/VFG6-A/VFG614Q.Seq.d/                       1435   0.0
FC-194 (FC-194Q) /CSM/CG/CG-FC/FC-194Q.Seq.d/                        1403   0.0
FC-AK11 (FC-AK11Q) /CSM/FC/FC-AK/FC-AK11Q.Seq.d/                     1396   0.0
VFN278 (VFN278Q) /CSM/VF/VFN2-D/VFN278Q.Seq.d/                       1364   0.0
SFG435 (SFG435Q) /CSM/SF/SFG4-B/SFG435Q.Seq.d/                       1342   0.0
VFN565 (VFN565Q) /CSM/VF/VFN5-C/VFN565Q.Seq.d/                       1328   0.0
VFA824 (VFA824Q) /CSM/VF/VFA8-A/VFA824Q.Seq.d/                       1057   0.0
FC-AV23 (FC-AV23Q) /CSM/FC/FC-AV/FC-AV23Q.Seq.d/                      981   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AJ010980|AJ010980.1 Dictyostelium discoideum mRNA for translation initiation factor 2  gamma, partial.   858  0.0  3
AJ290964|AJ290964.1 Leptinotarsa decemlineata mRNA for eukaryotic translation initiation factor 2 gamma (eIF-2g gene).    68  9e-28  4
AJ290965|AJ290965.1 Leptinotarsa decemlineata partial mRNA for heterochromatin protein (Su(var)3-9 gene).    68  5e-27  4
CB544993|CB544993.1 AMGNNUC:NRDG1-00077-F1-A nrdg1 (10855) Rattus norvegicus cDNA clone nrdg1-00077-f1 5', mRNA sequence.   117  1e-24  2
CF110461|CF110461.1 Shultzomica03712 Rat lung airway and parenchyma cDNA libraries Rattus norvegicus cDNA clone Contig329 5', mRNA sequence.   117  1e-24  2
AX596000|AX596000.1 Sequence 1654 from Patent EP1258494.          60  1e-24  5
L04268|L04268.1 Saccharomyces cerevisiae negative regulator of GCN4 (GCD11) gene, complete cds.    60  1e-23  5
CA533527|CA533527.1 C0400E05-5N NIA Mouse ES Cell (LIF-) cDNA Library (Long) Mus musculus cDNA clone NIA:C0400E05 IMAGE:30009652 5', mRNA sequence.   109  2e-22  2
CB576222|CB576222.1 AMGNNUC:NRDG1-00184-H12-A nrdg1 (10855) Rattus norvegicus cDNA clone nrdg1-00184-h12 5', mRNA sequence.   117  3e-22  1
BG296917|BG296917.1 602394734F1 NIH_MGC_94 Mus musculus cDNA clone IMAGE:4506200 5', mRNA sequence.   109  3e-22  2
dna update 2003. 9.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT059206_1(BT059206|pid:none) Salmo salar clone ssal-rgf-532-182...   242   e-125
BC158736_1(BC158736|pid:none) Rattus norvegicus eukaryotic trans...   239   e-124
(Q9Z0N2) RecName: Full=Eukaryotic translation initiation factor ...   238   e-124
(P81795) RecName: Full=Eukaryotic translation initiation factor ...   239   e-124
(Q2KHU8) RecName: Full=Eukaryotic translation initiation factor ...   239   e-124
AK290397_1(AK290397|pid:none) Homo sapiens cDNA FLJ78120 complet...   239   e-124
BC091286_1(BC091286|pid:none) Rattus norvegicus eukaryotic trans...   239   e-124
AY648723_1(AY648723|pid:none) Danio rerio eukaryotic translation...   239   e-123
AK312247_1(AK312247|pid:none) Homo sapiens cDNA, FLJ92541, highl...   239   e-123
AK151579_1(AK151579|pid:none) Mus musculus bone marrow macrophag...   239   e-123
protein update 2009. 7. 9
PSORT 

 psg: 0.75  gvh: 0.59  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: Golgi

>> prediction for SSM722 is cyt
5' end seq. ID SSM722F
5' end seq. 
>SSM722F.Seq
ACTATGTTAAATGGTGCAGCAGTTATGGATGCAGCTCTTTTATTGATTGCAGGTAATGAA
TCATGTCCACAACCACAAACTAGTGAACACATTGCAGCTATTGAAATTATGAATCTTAAA
AATATTATCATTCTTCAAAATAAGATTGATTTGGTAAAGGAAGCAGCAGCACAAGAACAA
TATGGTCAAATTTTGAAATTGATTCAAGGTACAATCGCAGAGAATGCACCAATCATTCCA
ATCTCTGCTCAAATGAAATACAATATCGATGTCATTTGTGAATACATTGTTAAAAAGATT
CCAATCCCAGTTAGAGATTTTACATCAGATCCACGTATGATCGTTATTCGTTCATTCGAT
GTCAATAAACCAGGTTCTCGTGTTGATGACATTAAAGGTGGTGTTGCTGGTGGTTCAATC
TTGAAGGGTGTATTAAAGATTGGCGATGAAATCGAAGTTCGTCCAGGTGTTATCAGTAAG
GAATTGGATGGTAAAATCAAATGTTCCCCAATCTTCTCTAGAATTATCTCTCTCTTTGCT
GAAGAGAATGAACTTCAATACGCTGTACCAGGTGGTTTAATTGGTGTTGGTACAAAGATC
GATCCAACCCTTTGCAGAGCTGATCGTTTGGTTGGTCAAGTT----------
Length of 5' end seq. 642
3' end seq. ID SSM722Z
3' end seq. 
>SSM722Z.Seq
----------AGGTGTTATCAGTAAGGAATTGGATGGTAAAATCAAATGTTCCCCAATCT
TCTCTAGAATTATCTCTCTCTTTGCTGAAGAGAATGAACTTCAATACGCTGTACCAGGTG
GTTTAATTGGTGTTGGTACAAAGATCGATCCAACCCTTTGCAGAGCTGATCGTTTGGTTG
GTCAAGTTTTAGGTTCAGTCGGTAAATTACCAGAAATTTTCGTCGCTCTCGAAGTTAACT
TTTTCCTCTTACGTAGACTTTTAGGTGTTAAATCCGATGGTGATAAACAAAGTAAAGTTA
AAAAATTATCCAAAGAAGATACCCTTATGGTTAACATTGGTTCAACTAGTACTGGTTGTC
GTGTCGTCGCTGTTAAACATGATTTAGCTAAACTTCAACTTTTAACTCCAGTTTGTTCTC
AAGAAGGTGAAAAAATCGCTTTATCAAGAAGAGTCGATAAAAATTGGAGACTTATTGGTT
GGGGTGAAATTAAAAAAGGTACCGTTCTCACTAATTAATCGAAAAATAATAATGCATTCA
ATTTAACTTAATGAAACATGTAATTTTCAAAAAATTTGCACGTA
Length of 3' end seq. 574
Connected seq. ID SSM722P
Connected seq. 
>SSM722P.Seq
ACTATGTTAAATGGTGCAGCAGTTATGGATGCAGCTCTTTTATTGATTGCAGGTAATGAA
TCATGTCCACAACCACAAACTAGTGAACACATTGCAGCTATTGAAATTATGAATCTTAAA
AATATTATCATTCTTCAAAATAAGATTGATTTGGTAAAGGAAGCAGCAGCACAAGAACAA
TATGGTCAAATTTTGAAATTGATTCAAGGTACAATCGCAGAGAATGCACCAATCATTCCA
ATCTCTGCTCAAATGAAATACAATATCGATGTCATTTGTGAATACATTGTTAAAAAGATT
CCAATCCCAGTTAGAGATTTTACATCAGATCCACGTATGATCGTTATTCGTTCATTCGAT
GTCAATAAACCAGGTTCTCGTGTTGATGACATTAAAGGTGGTGTTGCTGGTGGTTCAATC
TTGAAGGGTGTATTAAAGATTGGCGATGAAATCGAAGTTCGTCCAGGTGTTATCAGTAAG
GAATTGGATGGTAAAATCAAATGTTCCCCAATCTTCTCTAGAATTATCTCTCTCTTTGCT
GAAGAGAATGAACTTCAATACGCTGTACCAGGTGGTTTAATTGGTGTTGGTACAAAGATC
GATCCAACCCTTTGCAGAGCTGATCGTTTGGTTGGTCAAGTT----------AGGTGTTA
TCAGTAAGGAATTGGATGGTAAAATCAAATGTTCCCCAATCTTCTCTAGAATTATCTCTC
TCTTTGCTGAAGAGAATGAACTTCAATACGCTGTACCAGGTGGTTTAATTGGTGTTGGTA
CAAAGATCGATCCAACCCTTTGCAGAGCTGATCGTTTGGTTGGTCAAGTTTTAGGTTCAG
TCGGTAAATTACCAGAAATTTTCGTCGCTCTCGAAGTTAACTTTTTCCTCTTACGTAGAC
TTTTAGGTGTTAAATCCGATGGTGATAAACAAAGTAAAGTTAAAAAATTATCCAAAGAAG
ATACCCTTATGGTTAACATTGGTTCAACTAGTACTGGTTGTCGTGTCGTCGCTGTTAAAC
ATGATTTAGCTAAACTTCAACTTTTAACTCCAGTTTGTTCTCAAGAAGGTGAAAAAATCG
CTTTATCAAGAAGAGTCGATAAAAATTGGAGACTTATTGGTTGGGGTGAAATTAAAAAAG
GTACCGTTCTCACTAATTAATCGAAAAATAATAATGCATTCAATTTAACTTAATGAAACA
TGTAATTTTCAAAAAATTTGCACGTA
Length of connected seq. 1216
Full length Seq ID SSM722E
Full length Seq. 
>SSM722E.Seq
ACTATGTTAAATGGTGCAGCAGTTATGGATGCAGCTCTTTTATTGATTGCAGGTAATGAA
TCATGTCCACAACCACAAACTAGTGAACACATTGCAGCTATTGAAATTATGAATCTTAAA
AATATTATCATTCTTCAAAATAAGATTGATTTGGTAAAGGAAGCAGCAGCACAAGAACAA
TATGGTCAAATTTTGAAATTGATTCAAGGTACAATCGCAGAGAATGCACCAATCATTCCA
ATCTCTGCTCAAATGAAATACAATATCGATGTCATTTGTGAATACATTGTTAAAAAGATT
CCAATCCCAGTTAGAGATTTTACATCAGATCCACGTATGATCGTTATTCGTTCATTCGAT
GTCAATAAACCAGGTTCTCGTGTTGATGACATTAAAGGTGGTGTTGCTGGTGGTTCAATC
TTGAAGGGTGTATTAAAGATTGGCGATGAAATCGAAGAGGTGTTATCAGTAAGGAATTGG
ATGGTAAAATCAAATGTTCCCCAATCTTCTCTAGAATTATCTCTCTCTTTGCTGAAGAGA
ATGAACTTCAATACGCTGTACCAGGTGGTTTAATTGGTGTTGGTACAAAGATCGATCCAA
CCCTTTGCAGAGCTGATCGTTTGGTTGGTCAAGTTGTTTTAGGTTCAGTCGGTAAATTAC
CAGAAATTTTCGTCGCTCTCGAAGTTAACTTTTTCCTCTTACGTAGACTTTTAGGTGTTA
AATCCGATGGTGATAAACAAAGTAAAGTTAAAAAATTATCCAAAGAAGATACCCTTATGG
TTAACATTGGTTCAACTAGTACTGGTTGTCGTGTCGTCGCTGTTAAACATGATTTAGCTA
AACTTCAACTTTTAACTCCAGTTTGTTCTCAAGAAGGTGAAAAAATCGCTTTATCAAGAA
GAGTCGATAAAAATTGGAGACTTATTGGTTGGGGTGAAATTAAAAAAGGTACCGTTCTCA
CTAATTAATCGAAAAATAATAATGCATTCAATTTAACTTAATGAAACATGTAATTTTCAA
AAAAT
Length of full length seq. 1025