>SSM718 (SSM718Q) /CSM/SS/SSM7-A/SSM718Q.Seq.d/
XXXXXXXXXXAAAACAAAACAGAGACAAGACAAATAAAATAATATTATATTATAAAATTT
TAGAATCTATAAACATATAAAAAAAAAAAAAAAAAAATGTCAGAACCAGTTAATAAAGTA
AAACAAACTCAACAACAAGTTGATGATGTTACAAATACCATGCACATTGCAGTTGGTAAA
ATGTTAGATAATCAACAAAAAGTTTCAGAATTAACAGATAAGAGTGAAAATATGAAACAA
GGTGCTCAACAATTCAAAAAGAAGACTAATGAAATCAAACGTTTAATGTGGTGTAGAAAT
ATAAAACTTACTCTTATCATTATTGCAGTAGTTGTGCTCTTATTGGTTGTTATTATTGTA
CCAATTGTTCTCAAATTTACATAAATCAATTTAAAAAAAGGAAAAACAACATTAATATAT
ATATTTAAGAATTCAAAAAATTA

---nktetrqik*yyiikf*nl*TYKKKKKKMSEPVNKVKQTQQQVDDVTNTMHIAVGKM
LDNQQKVSELTDKSENMKQGAQQFKKKTNEIKRLMWCRNIKLTLIIIAVVVLLLVVIIVP
IVLKFT*inlkkgkttliyifknskn

Frame A:
---kqnrdktnkiilyykilesini*kkkkknvrts**sktnstts**cykyhahcsw*n
vr*stksfrinr*e*kyetrcstiqked**nqtfnvv*kyktysyhycsscaligcyyct
ncsqiyinqfkkrknniniyi*efkkl


Frame B:
---nktetrqik*yyiikf*nl*TYKKKKKKMSEPVNKVKQTQQQVDDVTNTMHIAVGKM
LDNQQKVSELTDKSENMKQGAQQFKKKTNEIKRLMWCRNIKLTLIIIAVVVLLLVVIIVP
IVLKFT*inlkkgkttliyifknskn


Frame C:
---tkqrqdk*nniil*nfriykhikkkkkkcqnqlik*nklnnklmmlqipctlqlvkc
*iinkkfqn*qirvki*nkvlnnskrrlmksnv*cgvei*nlllsllq*lcsywllllyq
lfsnlhksi*kkekqh*yiylriqki

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM718 (SSM718Q) /CSM/SS/SSM7-A/SSM718Q.Seq.d/                        644   0.0
SSK419 (SSK419Q) /CSM/SS/SSK4-A/SSK419Q.Seq.d/                        644   0.0
SSH266 (SSH266Q) /CSM/SS/SSH2-C/SSH266Q.Seq.d/                        644   0.0
SSC615 (SSC615Q) /CSM/SS/SSC6-A/SSC615Q.Seq.d/                        644   0.0
SSM361 (SSM361Q) /CSM/SS/SSM3-C/SSM361Q.Seq.d/                        642   0.0
SSK783 (SSK783Q) /CSM/SS/SSK7-D/SSK783Q.Seq.d/                        636   0.0
SSM735 (SSM735Q) /CSM/SS/SSM7-B/SSM735Q.Seq.d/                        622   e-177
SSJ122 (SSJ122Q) /CSM/SS/SSJ1-A/SSJ122Q.Seq.d/                        620   e-177
SSH785 (SSH785Q) /CSM/SS/SSH7-D/SSH785Q.Seq.d/                        531   e-150
SSB132 (SSB132Q) /CSM/SS/SSB1-B/SSB132Q.Seq.d/                        428   e-119

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U32857|U32857.1 Saccharomyces cerevisiae VAR1 gene, mitochondrial gene encoding mitochondrial protein, 3' processing site, partial sequence.    38  0.002  3
AU087883|AU087883.1 Plasmodium falciparum 3D7 cDNA clone from Sugano malaria cDNA library: XPFn6063.    36  0.002  3
BH263821|BH263821.1 CH230-161G14.TJ CHORI-230 Segment 1 Rattus norvegicus genomic clone CH230-161G14, DNA sequence.    50  0.023  1
BH276177|BH276177.1 CH230-108G23.TJ CHORI-230 Segment 1 Rattus norvegicus genomic clone CH230-108G23, DNA sequence.    50  0.023  1
AE014824|AE014824.1 Plasmodium falciparum 3D7 chromosome 14 section 9 of 13 of the complete sequence.    38  0.030  6
AL034557|AL034557.8 Plasmodium falciparum MAL4P1.                 36  0.051  5
AX458577|AX458577.1 Sequence 123 from Patent WO0246454.           32  0.055  7
Y11974|Y11974.1 B.aphidicola (host T.caerulescens) plasmid DNA.    40  0.065  3
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.           46  0.082  3
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.          38  0.083  7

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54GB3) RecName: Full=Synaptobrevin-B;                                53   3e-06
AF484091_1(AF484091|pid:none) Lymnaea stagnalis synaptobrevin is...    46   3e-04
AE013599_1084(AE013599|pid:none) Drosophila melanogaster chromos...    45   6e-04
AE013599_1083(AE013599|pid:none) Drosophila melanogaster chromos...    45   6e-04
AB077367_1(AB077367|pid:none) Halocynthia roretzi HrCellubrevin ...    45   0.001
(Q60WU2) RecName: Full=Synaptobrevin-1; AltName: Full=Synaptobre...    44   0.001
AE014296_328(AE014296|pid:none) Drosophila melanogaster chromoso...    44   0.001
AE014296_330(AE014296|pid:none) Drosophila melanogaster chromoso...    44   0.001
AE014296_326(AE014296|pid:none) Drosophila melanogaster chromoso...    44   0.001
(Q62442) RecName: Full=Vesicle-associated membrane protein 1;   ...    44   0.002

 psg: 0.54  gvh: 0.18  alm: 0.01  top: 0.33  tms: 0.07  mit: 0.23  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: nuclear
	 20.0 %: cytoplasmic
	 20.0 %: endoplasmic reticulum
	 16.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SSM718 is nuc

>SSM718Z.Seq
----------AAAACAAAACAGAGACAAGACAAATAAAATAATATTATATTATAAAATTT
TAGAATCTATAAACATATAAAAAAAAAAAAAAAAAAATGTCAGAACCAGTTAATAAAGTA
AAACAAACTCAACAACAAGTTGATGATGTTACAAATACCATGCACATTGCAGTTGGTAAA
ATGTTAGATAATCAACAAAAAGTTTCAGAATTAACAGATAAGAGTGAAAATATGAAACAA
GGTGCTCAACAATTCAAAAAGAAGACTAATGAAATCAAACGTTTAATGTGGTGTAGAAAT
ATAAAACTTACTCTTATCATTATTGCAGTAGTTGTGCTCTTATTGGTTGTTATTATTGTA
CCAATTGTTCTCAAATTTACATAAATCAATTTAAAAAAAGGAAAAACAACATTAATATAT
ATATTTAAGAATTCAAAAAATTA