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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSM702
Library SS
(Link to library)
Clone ID SSM702
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U05913-1
Original site URL
Representative seq. ID SSM702E
(Link to Original site)
Representative DNA sequence 
>SSM702 (SSM702Q) /CSM/SS/SSM7-A/SSM702Q.Seq.d/
ACGAATTAGAATTAGAAGAGGATGATCAATTAAATATTACTGATAATTCAGTTCAACCAA
ATTTCTATGAATTTGATGAATCTTCAATTTTGGATTTCAATGGTGGTGATCTATATGAAG
GTTTAATTGAATTACATAAAGGTCAAACTCAACTATTAGAATTATTTTTTATTTTAGCAG
ATTCTTATAGATTACTTTGTTTATATTTATGTAAAGAAGCAATTGAATCATTTAAAAGAT
TATCAGAAGAACAATATAGAACTGGATGGGTATTAACAAAAGTAGCAAAAGCATATCATG
AATTAATTGATTATAAAGAGGCAAGATCAATATTTCAAGAGGTATCACAAATGGAACCAT
ATAGATTAGAGGGTATGGAATTATATTCAACATTGTTATGGCAAATGAATGAAGATGCAG
AATTAAGTTATATTGCACATAAATATTCAGAATTCGATAGATTGTCACCCTACTCTTGGG
TAGTGGTAGGCAATTGTTTCAGTTTACAACGTGATCATGAAGCTGCAATCAAATTGTTTA
GAAGAGCCATTCAATTGGATCCAGACATGACCTATGCCTATACATTATGTGGTCATGAAT
ATTTAGCGAACGACGAGTTGGAGTTAGCATTGAATGCACCATTAGATGTGACCCACGTCC
ATTACAATGCCTTCTATGGCCATTGGATTGATTTATTATCGTCCAAGAGAAATACAATTT
AGCAGAGTATCATTTTAGAAAAGCATTCTCAATCAATGAGTCCAGTTCGGTGTTATGTTG
TTATTTAGGTATGACCCTACAACATAATCCAAATAAAATTCAAGACGGTATTGATATGCT
ATATCGTTCAATTGAAATTCAACCAAAGAATACCTTTGCAAAATTCAAATTAGCTGCCTT
CCTCTTTGCAAATCAACAATATCATCATGCTATCGATCAATTATTAGAGTTTAAAGAAAT
TGAACCAAAAGAAACTCCAATCTACATTCTTTTAGGTAAATGTTATAAACAATTGGGCGA
ACTCGATAAAGCTTTAGATTCTTTAAATACCGCTTTGGATCTTGATCCAAAAAATTCAAA
TTACATTCGTTCTTTAATTGATAAATTACCTTTAGAGGATGAAGATGATAATCAAGATTA
TTTTCAATTAAATTAAGTAAATAATCAA
sequence update 1999. 4.21
Translated Amino Acid sequence 
ELELEEDDQLNITDNSVQPNFYEFDESSILDFNGGDLYEGLIELHKGQTQLLELFFILAD
SYRLLCLYLCKEAIESFKRLSEEQYRTGWVLTKVAKAYHELIDYKEARSIFQEVSQMEPY
RLEGMELYSTLLWQMNEDAELSYIAHKYSEFDRLSPYSWVVVGNCFSLQRDHEAAIKLFR
RAIQLDPDMTYAYTLCGHEYLANDELELALNAPLDVTHVHYNAFYGHWIDLLSSKRNTI*
qsiilekhsqsmspvrcyvvi*v*pyniiqikfktvlicyivqlkfnqriplqnsn*lps
slqinniimlsiny*slkklnqkklqstff*vnvinnwansikl*il*iplwiliqkiqi
tfvl*linyl*rmkmiikiifn*ik*ii
Translated Amino Acid sequence (All Frames) 
Frame A:
tn*n*krmin*illiiqfnqismnlmnlqfwismvviymkv*lnyikvklny*nyflf*q
ilidyfvyiyvkkqlnhlkdyqknnieldgy*qk*qkhimn*liikrqdqyfkryhkwnh
id*rvwnyiqhcygk*mkmqn*vilhiniqnsidchptlg*w*aivsvynvimklqsncl
eepfnwiqt*pmpihyvvmni*rttsws*h*mhh*m*ptsitmpsmaigliyyrpreiqf
srvsf*ksilnq*vqfgvmllfrydptt*sk*nsrry*yaisfn*nstkeylckiqiscl
plckstisscyrsiirv*rn*tkrnsnlhsfr*ml*tigrtr*sfrffkyrfgs*skkfk
lhsffn**itfrg*r**srlfsiklsk*s


Frame B:
ririrrg*sikyy**fsstkfl*i**ifnfgfqww*si*rfn*it*rsnstiriifyfsr
fl*itlfifm*rsn*ii*kiirrti*nwmginkssksis*in*l*rgkinisrgitngti
*irgygiifnivmane*rcriklyct*ifrir*ivtlllgsgrqlfqftt*s*scnqiv*
kshsigsrhdlclyimws*ifserrvgvsiectircdprplqcllwpld*fiivqekynl
aeyhfrkafsinesssvlccylgmtlqhnpnkiqdgidmlyrsieiqpkntfakfklaaf
lfanqqyhhaidqllefkeiepketpiyillgkcykqlgeldkaldslntaldldpknsn
yirslidklplededdnqdyfqln*vnnq


Frame C:
ELELEEDDQLNITDNSVQPNFYEFDESSILDFNGGDLYEGLIELHKGQTQLLELFFILAD
SYRLLCLYLCKEAIESFKRLSEEQYRTGWVLTKVAKAYHELIDYKEARSIFQEVSQMEPY
RLEGMELYSTLLWQMNEDAELSYIAHKYSEFDRLSPYSWVVVGNCFSLQRDHEAAIKLFR
RAIQLDPDMTYAYTLCGHEYLANDELELALNAPLDVTHVHYNAFYGHWIDLLSSKRNTI*
qsiilekhsqsmspvrcyvvi*v*pyniiqikfktvlicyivqlkfnqriplqnsn*lps
slqinniimlsiny*slkklnqkklqstff*vnvinnwansikl*il*iplwiliqkiqi
tfvl*linyl*rmkmiikiifn*ik*ii
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM702 (SSM702Q) /CSM/SS/SSM7-A/SSM702Q.Seq.d/                       2315   0.0
SSM282 (SSM282Q) /CSM/SS/SSM2-D/SSM282Q.Seq.d/                         44   0.005
SSA315 (SSA315Q) /CSM/SS/SSA3-A/SSA315Q.Seq.d/                         44   0.005
SSE620 (SSE620Q) /CSM/SS/SSE6-A/SSE620Q.Seq.d/                         40   0.075
SSC418 (SSC418Q) /CSM/SS/SSC4-A/SSC418Q.Seq.d/                         40   0.075
SSB630 (SSB630Q) /CSM/SS/SSB6-B/SSB630Q.Seq.d/                         40   0.075
VSE168 (VSE168Q) /CSM/VS/VSE1-C/VSE168Q.Seq.d/                         36   1.2
VHL852 (VHL852Q) /CSM/VH/VHL8-C/VHL852Q.Seq.d/                         36   1.2
VHK225 (VHK225Q) /CSM/VH/VHK2-B/VHK225Q.Seq.d/                         36   1.2
VHJ859 (VHJ859Q) /CSM/VH/VHJ8-C/VHJ859Q.Seq.d/                         36   1.2
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    34  0.031  11
AF083031|AF083031.2 Guillardia theta nucleomorph chromosome 3, complete sequence.    42  0.10  6
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    36  0.11  6
AL590028|AL590028.7 Human DNA sequence from clone RP11-384M8 on chromosome 13.    50  0.14  4
AW155331|AW155331.1 mgie0007G14f Rice blast infection stage cDNA library Oryza sativa/Pyricularia oryzae mixed EST library cDNA clone mgie0007G14f, mRNA sequence.    48  0.25  1
AC026755|AC026755.16 Homo sapiens chromosome 13 clone RP11-286K2, WORKING DRAFT SEQUENCE, 3 unordered pieces.    50  0.30  5
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    34  0.51  10
AC006281|AC006281.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    36  0.58  8
AC011285|AC011285.5 Homo sapiens chromosome CTD clone CTD-2337B17, WORKING DRAFT SEQUENCE, 20 unordered pieces.    38  0.71  6
AL731672|AL731672.12 Mouse DNA sequence from clone RP23-161L11 on chromosome X.    36  0.90  5
dna update 2003. 9.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ720193_1(AJ720193|pid:none) Gallus gallus mRNA for hypothetica...   171   6e-69
AP008212_1574(AP008212|pid:none) Oryza sativa (japonica cultivar...   178   1e-68
BT044958_1(BT044958|pid:none) Salmo salar clone ssal-rgf-508-172...   165   3e-68
AB168940_1(AB168940|pid:none) Macaca fascicularis testis cDNA, c...   168   5e-68
BC011656_1(BC011656|pid:none) Homo sapiens cell division cycle 2...   168   6e-68
(P30260) RecName: Full=Cell division cycle protein 27 homolog;  ...   168   6e-68
AK161143_1(AK161143|pid:none) Mus musculus 10 days neonate skin ...   165   5e-67
BC121885_1(BC121885|pid:none) Xenopus tropicalis hypothetical pr...   165   7e-67
BC072946_1(BC072946|pid:none) Xenopus laevis MGC80529 protein, m...   164   1e-66
AY675120_1(AY675120|pid:none) Ostreococcus tauri cell division c...   169   2e-65
protein update 2009. 7. 9
PSORT 

 psg: 0.75  gvh: 0.49  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.08  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for SSM702 is nuc
5' end seq. ID SSM702F
5' end seq. 
>SSM702F.Seq
ACGAATTAGAATTAGAAGAGGATGATCAATTAAATATTACTGATAATTCAGTTCAACCAA
ATTTCTATGAATTTGATGAATCTTCAATTTTGGATTTCAATGGTGGTGATCTATATGAAG
GTTTAATTGAATTACATAAAGGTCAAACTCAACTATTAGAATTATTTTTTATTTTAGCAG
ATTCTTATAGATTACTTTGTTTATATTTATGTAAAGAAGCAATTGAATCATTTAAAAGAT
TATCAGAAGAACAATATAGAACTGGATGGGTATTAACAAAAGTAGCAAAAGCATATCATG
AATTAATTGATTATAAAGAGGCAAGATCAATATTTCAAGAGGTATCACAAATGGAACCAT
ATAGATTAGAGGGTATGGAATTATATTCAACATTGTTATGGCAAATGAATGAAGATGCAG
AATTAAGTTATATTGCACATAAATATTCAGAATTCGATAGATTGTCACCCTACTCTTGGG
TAGTGGTAGGCAATTGTTTCAGTTTACAACGTGATCATGAAGCTGCAATCAAATTGTTTA
GAAGAGCCATTCAATTGGATCCAGACATGACCTATGCCTATACATTATGTGGTCATGAAT
ATTTAGCGAACGACGAGTTGGAGTTAGCATTGAATGCATTTAGAATGGCCATTAGATGTG
ACCCACGTCATTACAATGCCTTCTATGGCATTGGATTGATTTATTATCGTC---------
-
Length of 5' end seq. 711
3' end seq. ID SSM702Z
3' end seq. 
>SSM702Z.Seq
----------CCATTAGATGTGACCCACGTCCATTACAATGCCTTCTATGGCCATTGGAT
TGATTTATTATCGTCAAGAGAAATACAATTTAGCAGAGTATCATTTTAGAAAAGCATTCT
CAATCAATGAGTCCAGTTCGGTGTTATGTTGTTATTTAGGTATGACCCTACAACATAATC
CAAATAAAATTCAAGACGGTATTGATATGCTATATCGTTCAATTGAAATTCAACCAAAGA
ATACCTTTGCAAAATTCAAATTAGCTGCCTTCCTCTTTGCAAATCAACAATATCATCATG
CTATCGATCAATTATTAGAGTTTAAAGAAATTGAACCAAAAGAAACTCCAATCTACATTC
TTTTAGGTAAATGTTATAAACAATTGGGCGAACTCGATAAAGCTTTAGATTCTTTAAATA
CCGCTTTGGATCTTGATCCAAAAAATTCAAATTACATTCGTTCTTTAATTGATAAATTAC
CTTTAGAGGATGAAGATGATAATCAAGATTATTTTCAATTAAATTAAGTAAATAATCAAT
TTTATTA
Length of 3' end seq. 537
Connected seq. ID SSM702P
Connected seq. 
>SSM702P.Seq
ACGAATTAGAATTAGAAGAGGATGATCAATTAAATATTACTGATAATTCAGTTCAACCAA
ATTTCTATGAATTTGATGAATCTTCAATTTTGGATTTCAATGGTGGTGATCTATATGAAG
GTTTAATTGAATTACATAAAGGTCAAACTCAACTATTAGAATTATTTTTTATTTTAGCAG
ATTCTTATAGATTACTTTGTTTATATTTATGTAAAGAAGCAATTGAATCATTTAAAAGAT
TATCAGAAGAACAATATAGAACTGGATGGGTATTAACAAAAGTAGCAAAAGCATATCATG
AATTAATTGATTATAAAGAGGCAAGATCAATATTTCAAGAGGTATCACAAATGGAACCAT
ATAGATTAGAGGGTATGGAATTATATTCAACATTGTTATGGCAAATGAATGAAGATGCAG
AATTAAGTTATATTGCACATAAATATTCAGAATTCGATAGATTGTCACCCTACTCTTGGG
TAGTGGTAGGCAATTGTTTCAGTTTACAACGTGATCATGAAGCTGCAATCAAATTGTTTA
GAAGAGCCATTCAATTGGATCCAGACATGACCTATGCCTATACATTATGTGGTCATGAAT
ATTTAGCGAACGACGAGTTGGAGTTAGCATTGAATGCATTTAGAATGGCCATTAGATGTG
ACCCACGTCATTACAATGCCTTCTATGGCATTGGATTGATTTATTATCGTC---------
-CCATTAGATGTGACCCACGTCCATTACAATGCCTTCTATGGCCATTGGATTGATTTATT
ATCGTCAAGAGAAATACAATTTAGCAGAGTATCATTTTAGAAAAGCATTCTCAATCAATG
AGTCCAGTTCGGTGTTATGTTGTTATTTAGGTATGACCCTACAACATAATCCAAATAAAA
TTCAAGACGGTATTGATATGCTATATCGTTCAATTGAAATTCAACCAAAGAATACCTTTG
CAAAATTCAAATTAGCTGCCTTCCTCTTTGCAAATCAACAATATCATCATGCTATCGATC
AATTATTAGAGTTTAAAGAAATTGAACCAAAAGAAACTCCAATCTACATTCTTTTAGGTA
AATGTTATAAACAATTGGGCGAACTCGATAAAGCTTTAGATTCTTTAAATACCGCTTTGG
ATCTTGATCCAAAAAATTCAAATTACATTCGTTCTTTAATTGATAAATTACCTTTAGAGG
ATGAAGATGATAATCAAGATTATTTTCAATTAAATTAAGTAAATAATCAATTTTATTA
Length of connected seq. 1248
Full length Seq ID SSM702E
Full length Seq. 
>SSM702E.Seq
ACGAATTAGAATTAGAAGAGGATGATCAATTAAATATTACTGATAATTCAGTTCAACCAA
ATTTCTATGAATTTGATGAATCTTCAATTTTGGATTTCAATGGTGGTGATCTATATGAAG
GTTTAATTGAATTACATAAAGGTCAAACTCAACTATTAGAATTATTTTTTATTTTAGCAG
ATTCTTATAGATTACTTTGTTTATATTTATGTAAAGAAGCAATTGAATCATTTAAAAGAT
TATCAGAAGAACAATATAGAACTGGATGGGTATTAACAAAAGTAGCAAAAGCATATCATG
AATTAATTGATTATAAAGAGGCAAGATCAATATTTCAAGAGGTATCACAAATGGAACCAT
ATAGATTAGAGGGTATGGAATTATATTCAACATTGTTATGGCAAATGAATGAAGATGCAG
AATTAAGTTATATTGCACATAAATATTCAGAATTCGATAGATTGTCACCCTACTCTTGGG
TAGTGGTAGGCAATTGTTTCAGTTTACAACGTGATCATGAAGCTGCAATCAAATTGTTTA
GAAGAGCCATTCAATTGGATCCAGACATGACCTATGCCTATACATTATGTGGTCATGAAT
ATTTAGCGAACGACGAGTTGGAGTTAGCATTGAATGCACCATTAGATGTGACCCACGTCC
ATTACAATGCCTTCTATGGCCATTGGATTGATTTATTATCGTCCAAGAGAAATACAATTT
AGCAGAGTATCATTTTAGAAAAGCATTCTCAATCAATGAGTCCAGTTCGGTGTTATGTTG
TTATTTAGGTATGACCCTACAACATAATCCAAATAAAATTCAAGACGGTATTGATATGCT
ATATCGTTCAATTGAAATTCAACCAAAGAATACCTTTGCAAAATTCAAATTAGCTGCCTT
CCTCTTTGCAAATCAACAATATCATCATGCTATCGATCAATTATTAGAGTTTAAAGAAAT
TGAACCAAAAGAAACTCCAATCTACATTCTTTTAGGTAAATGTTATAAACAATTGGGCGA
ACTCGATAAAGCTTTAGATTCTTTAAATACCGCTTTGGATCTTGATCCAAAAAATTCAAA
TTACATTCGTTCTTTAATTGATAAATTACCTTTAGAGGATGAAGATGATAATCAAGATTA
TTTTCAATTAAATTAAGTAAATAATCAA
Length of full length seq. 1168