SSM658
Library SS
(Link to library)
Clone ID SSM658
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U13857-1
Original site URL
Representative seq. ID SSM658P
(Link to Original site)
Representative DNA sequence
>SSM658 (SSM658Q) /CSM/SS/SSM6-C/SSM658Q.Seq.d/
TTAAAGGGTAAATTGATAATGATCAATTTCTTTGTACAATAGAATATAAAATTTAATATA
TATATGAGACTAGTATTTCAATAAATCATCTAAAAAAAATAAATTTTTAAAGATAGTTGA
AATTAAAAAAAAAAAGTAAAAACAATAAAAATAGAAATATTTATAGTATTAGAAGTGAAA
AAAAAGAAAATAATAGAAACAATAAAAAAAACAACAATAATAGTAAAAAAACTATTTTAA
AAATAAATAAAAATAATAAAAATAATTTTATTATTAATATAATTAAAAGAATATGGATAA
AATGGAATCAGCAACATCAGAAACCACCTTAACATATTCATCAGAACATACAAAAAGTTC
AGAAATAATATCAGAAGCAAGTAGTAAAGATAGTCGTGATAATATTAAAATTAGAAGTAG
CTTTATATCATCATCTTTATTTTTTATAAAAATATCAATATGGTTTTTTGGATATAGTGT
TGTTCAAGGTGCAACAGCAGCATTTGCAATTCCATATCAAGTTTCAATATTAAGACCAGA
AGATAAAACATATTGGAATGGTATATTACCAATTAGTGGATGTTXXXXXXXXXXTTAATC
ACAATTTCATTCAATCCTTCATTTGCTGGTTTGTTGATTCTATCAGGTTTCTTAGGTGTT
GGTTATGGTGCTTATCAATGTGTTGATTGGGCATTGGCACTTCATTCATTACCAAATAAA
ACCATTGGCAAAGATATGGGTATTTGGCATATCTCTTTTATCGCTCCAACTGTAGTTGCT
CCAGCTATCACTGGTAGCATCTTACAAGCTACTCAAATTACCCTTGAAAATGGTACTAAA
ATTTCTTCACAATATGGTTATGCTATTGTTTTTGGTATTAGTTCATTTTGGTTCCTTTTA
GCAACAATCTTTATTTATCCAATGAAAATTAGTGCTATTCCAAAAAATTGTTCTAGAAAA
GATCAACAACAACAAACTAATAATCAACAATCACAAAATCAACAACAATTACAACCAACT
AATAATGGTGCTGATTTAAATAATCATAATAATGGTAAAGAAAACCCAATAATAGAACCA
GTTTAAATATTCTATTTTTAGATCAAAAAAAATCAAAAAAAAAAAA
sequence update 1998.12. 3
Translated Amino Acid sequence
*rvn***sislynri*nliyi*d*yfnksskknkflkiveikkkk*kq*k*kyl*y*k*k
krk**kq*kkqq***knyfknk*k**k*fyy*yn*KNMDKMESATSETTLTYSSEHTKSS
EIISEASSKDSRDNIKIRSSFISSSLFFIKISIWFFGYSVVQGATAAFAIPYQVSILRPE
DKTYWNGILPISGC---

---LITISFNPSFAGLLILSGFLGVGYGAYQCVDWALALHSLPNKTIGKDMGIWHISFIA
PTVVAPAITGSILQATQITLENGTKISSQYGYAIVFGISSFWFLLATIFIYPMKISAIPK
NCSRKDQQQQTNNQQSQNQQQLQPTNNGADLNNHNNGKENPIIEPV*ifyf*ikknqkkk


Translated Amino Acid sequence (All Frames)
Frame A:
lkgkliminffvq*nikfniymrlvfq*ii*kk*ifkds*n*kkkvktikieifivlevk
kkkiietikkttiivkklf*k*ikiikiillli*lkeyg*ngisnirnhlnifirtykkf
rnnirsk**r*s**y*n*k*lyiiififykninmvfwi*ccsrcnssicnsissfniktr
r*nilewyitn*wm---

---LITISFNPSFAGLLILSGFLGVGYGAYQCVDWALALHSLPNKTIGKDMGIWHISFIA
PTVVAPAITGSILQATQITLENGTKISSQYGYAIVFGISSFWFLLATIFIYPMKISAIPK
NCSRKDQQQQTNNQQSQNQQQLQPTNNGADLNNHNNGKENPIIEPV*ifyf*ikknqkkk

Frame B:
*rvn***sislynri*nliyi*d*yfnksskknkflkiveikkkk*kq*k*kyl*y*k*k
krk**kq*kkqq***knyfknk*k**k*fyy*yn*KNMDKMESATSETTLTYSSEHTKSS
EIISEASSKDSRDNIKIRSSFISSSLFFIKISIWFFGYSVVQGATAAFAIPYQVSILRPE
DKTYWNGILPISGC---

---*sqfhsilhllvc*fyqvs*vlvmvlinvlighwhfihyqikplakiwvfgisllsl
ql*llqlslvasykllklplkmvlkflhnmvmllflvlvhfgsf*qqslfiq*klvlfqk
ivlekinnnkliinnhkinnnynqlimvli*iiiimvkktq**nqfkysifrskkikkkk

Frame C:
kg*idndqflctieyki*yiyetsisinhlkkinf*r*lklkkksknnknrniysirsek
kennrnnkknnnnskktilkinknnknnfiiniikriwikwnqqhqkpp*hihqniqkvq
k*yqkqvvkivviilklevalyhhlyfl*kyqygfldivlfkvqqqhlqfhikfqy*dqk
ikhigmvyyqlvdv---

---nhnfiqsficwfvdsirflrcwlwclsmc*lgigtsfitk*nhwqrygylaylfyrs
ncscssyhw*hltsysnyp*kwy*nfftiwlcycfwy*filvpfsnnlylsnen*cyskk
lf*krstttn**stitksttittn**wc*fk*s**w*rkpnnrtslnilfldqkkskkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSM658 (SSM658Q) /CSM/SS/SSM6-C/SSM658Q.Seq.d/ 1275 0.0
SSM685 (SSM685Q) /CSM/SS/SSM6-D/SSM685Q.Seq.d/ 728 0.0
AFM487 (AFM487Q) /CSM/AF/AFM4-D/AFM487Q.Seq.d/ 728 0.0
AFJ322 (AFJ322Q) /CSM/AF/AFJ3-A/AFJ322Q.Seq.d/ 728 0.0
SLH171 (SLH171Q) /CSM/SL/SLH1-C/SLH171Q.Seq.d/ 597 e-169
SSJ230 (SSJ230Q) /CSM/SS/SSJ2-B/SSJ230Q.Seq.d/ 579 e-164
AFI202 (AFI202Q) /CSM/AF/AFI2-A/AFI202Q.Seq.d/ 539 e-152
AFN759 (AFN759Q) /CSM/AF/AFN7-C/AFN759Q.Seq.d/ 420 e-116
AFG890 (AFG890Q) /CSM/AF/AFG8-D/AFG890Q.Seq.d/ 400 e-110
SFH516 (SFH516Q) /CSM/SF/SFH5-A/SFH516Q.Seq.d/ 383 e-105

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL844506|AL844506.1 Plasmodium falciparum chromosome 7. 44 0.001 10
AB063521|AB063521.2 Wigglesworthia brevipalpis DNA, complete genome, section 1/2. 32 0.010 12
Z98547|Z98547.2 Plasmodium falciparum MAL3P3. 38 0.026 7
AC109494|AC109494.3 Homo sapiens chromosome 5 clone RP11-783J1, complete sequence. 34 0.15 7
AE014828|AE014828.1 Plasmodium falciparum 3D7 chromosome 14 section 13 of 13 of the complete sequence. 32 0.21 10
AQ450516|AQ450516.1 500012F08.x1 CpIOWAM13mp18gDNA1 Cryptosporidium parvum genomic, genomic survey sequence. 48 0.24 1
AQ842547|AQ842547.1 CpG1127B CpIOWAgDNA1 Cryptosporidium parvum genomic, genomic survey sequence. 48 0.24 1
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 36 0.27 9
BX470143|BX470143.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 40 0.31 5
AL844505|AL844505.1 Plasmodium falciparum chromosome 6. 42 0.31 8
dna update 2003. 8.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

A75444(A75444) hypothetical protein - Deinococcus radiodurans (s... 73 2e-11
CP001213_42(CP001213|pid:none) Bifidobacterium animalis subsp. l... 57 9e-07
AE014295_428(AE014295|pid:none) Bifidobacterium longum NCC2705, ... 50 1e-04
CP001341_3726(CP001341|pid:none) Arthrobacter chlorophenolicus A... 50 2e-04
CP000358_223(CP000358|pid:none) Deinococcus geothermalis DSM 113... 49 2e-04
CP000476_147(CP000476|pid:none) Arthrobacter aurescens TC1 plasm... 49 2e-04
CP000910_2141(CP000910|pid:none) Renibacterium salmoninarum ATCC... 49 3e-04
AM711867_115(AM711867|pid:none) Clavibacter michiganensis subsp.... 47 0.001
CP000474_3686(CP000474|pid:none) Arthrobacter aurescens TC1, com... 47 0.001
AP009256_1209(AP009256|pid:none) Bifidobacterium adolescentis AT... 47 0.002
protein update 2009. 6.15
PSORT

psg: 0.76 gvh: 0.37 alm: 0.24 top: 0.33 tms: 0.27 mit: 0.20 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

32.0 %: plasma membrane
28.0 %: endoplasmic reticulum
16.0 %: mitochondrial
8.0 %: extracellular, including cell wall
8.0 %: nuclear
4.0 %: Golgi
4.0 %: vesicles of secretory system

>> prediction for SSM658 is pla

5' end seq. ID SSM658F
5' end seq.
>SSM658F.Seq
TTAAAGGGTAAATTGATAATGATCAATTTCTTTGTACAATAGAATATAAAATTTAATATA
TATATGAGACTAGTATTTCAATAAATCATCTAAAAAAAATAAATTTTTAAAGATAGTTGA
AATTAAAAAAAAAAAGTAAAAACAATAAAAATAGAAATATTTATAGTATTAGAAGTGAAA
AAAAAGAAAATAATAGAAACAATAAAAAAAACAACAATAATAGTAAAAAAACTATTTTAA
AAATAAATAAAAATAATAAAAATAATTTTATTATTAATATAATTAAAAGAATATGGATAA
AATGGAATCAGCAACATCAGAAACCACCTTAACATATTCATCAGAACATACAAAAAGTTC
AGAAATAATATCAGAAGCAAGTAGTAAAGATAGTCGTGATAATATTAAAATTAGAAGTAG
CTTTATATCATCATCTTTATTTTTTATAAAAATATCAATATGGTTTTTTGGATATAGTGT
TGTTCAAGGTGCAACAGCAGCATTTGCAATTCCATATCAAGTTTCAATATTAAGACCAGA
AGATAAAACATATTGGAATGGTATATTACCAATTAGTGGATGTT----------
Length of 5' end seq. 584
3' end seq. ID SSM658Z
3' end seq.
>SSM658Z.Seq
----------TTAATCACAATTTCATTCAATCCTTCATTTGCTGGTTTGTTGATTCTATC
AGGTTTCTTAGGTGTTGGTTATGGTGCTTATCAATGTGTTGATTGGGCATTGGCACTTCA
TTCATTACCAAATAAAACCATTGGCAAAGATATGGGTATTTGGCATATCTCTTTTATCGC
TCCAACTGTAGTTGCTCCAGCTATCACTGGTAGCATCTTACAAGCTACTCAAATTACCCT
TGAAAATGGTACTAAAATTTCTTCACAATATGGTTATGCTATTGTTTTTGGTATTAGTTC
ATTTTGGTTCCTTTTAGCAACAATCTTTATTTATCCAATGAAAATTAGTGCTATTCCAAA
AAATTGTTCTAGAAAAGATCAACAACAACAAACTAATAATCAACAATCACAAAATCAACA
ACAATTACAACCAACTAATAATGGTGCTGATTTAAATAATCATAATAATGGTAAAGAAAA
CCCAATAATAGAACCAGTTTAAATATTCTATTTTTAGATCAAAAAAAATCAAAAAAAAAA
AA
Length of 3' end seq. 532
Connected seq. ID SSM658P
Connected seq.
>SSM658P.Seq
TTAAAGGGTAAATTGATAATGATCAATTTCTTTGTACAATAGAATATAAAATTTAATATA
TATATGAGACTAGTATTTCAATAAATCATCTAAAAAAAATAAATTTTTAAAGATAGTTGA
AATTAAAAAAAAAAAGTAAAAACAATAAAAATAGAAATATTTATAGTATTAGAAGTGAAA
AAAAAGAAAATAATAGAAACAATAAAAAAAACAACAATAATAGTAAAAAAACTATTTTAA
AAATAAATAAAAATAATAAAAATAATTTTATTATTAATATAATTAAAAGAATATGGATAA
AATGGAATCAGCAACATCAGAAACCACCTTAACATATTCATCAGAACATACAAAAAGTTC
AGAAATAATATCAGAAGCAAGTAGTAAAGATAGTCGTGATAATATTAAAATTAGAAGTAG
CTTTATATCATCATCTTTATTTTTTATAAAAATATCAATATGGTTTTTTGGATATAGTGT
TGTTCAAGGTGCAACAGCAGCATTTGCAATTCCATATCAAGTTTCAATATTAAGACCAGA
AGATAAAACATATTGGAATGGTATATTACCAATTAGTGGATGTT----------TTAATC
ACAATTTCATTCAATCCTTCATTTGCTGGTTTGTTGATTCTATCAGGTTTCTTAGGTGTT
GGTTATGGTGCTTATCAATGTGTTGATTGGGCATTGGCACTTCATTCATTACCAAATAAA
ACCATTGGCAAAGATATGGGTATTTGGCATATCTCTTTTATCGCTCCAACTGTAGTTGCT
CCAGCTATCACTGGTAGCATCTTACAAGCTACTCAAATTACCCTTGAAAATGGTACTAAA
ATTTCTTCACAATATGGTTATGCTATTGTTTTTGGTATTAGTTCATTTTGGTTCCTTTTA
GCAACAATCTTTATTTATCCAATGAAAATTAGTGCTATTCCAAAAAATTGTTCTAGAAAA
GATCAACAACAACAAACTAATAATCAACAATCACAAAATCAACAACAATTACAACCAACT
AATAATGGTGCTGATTTAAATAATCATAATAATGGTAAAGAAAACCCAATAATAGAACCA
GTTTAAATATTCTATTTTTAGATCAAAAAAAATCAAAAAAAAAAAA
Length of connected seq. 1116
Full length Seq ID -
Full length Seq. -
Length of full length seq. -