>SSM651 (SSM651Q) /CSM/SS/SSM6-C/SSM651Q.Seq.d/
CAACTATTGTACATATTTATTTTATTTTGTATTATAATTAAAAAAAAAAAAAAAAAAATA
AAAAAATAAAAAAAAAAACAGACTTTTTTTATTCCTTTTGTATTTCTATTTTTGTATAAT
CAACCATAATCATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAXXXXXXXXXXG
GAACACCAGACTATACTGCACCAGAAGTATTGATGAAAGATGGTTACAGTGCAGAGTGTG
ATTGGTGGAGTGTTGGTGTTATTATGTTTGAAATGTTGGTTGGTTATCCACCATTTTGTT
CAGAATCAATTAGAGAAACCTATCATAAGATTATGAATTGGAAACAAACATTACCAAAAA
TCATGGAAGAAGCAAAAGCAGAAGTAAACTTAAGTCCAGAAGCACAAGATCTCATTGAAC
GTTTCCTCACCGATCCAATGACTCGTATTGGTTTTAATGGTGTCGAGGAGATTCAATCTC
ATCCATTCTTTAAAGGTGTCGATTGGAGAAGACTAAGGGAAACCAGACCTCCAATCATTC
CACAACTCTCTTCACCAACCGATACTTCAAATTTTGATCACTATGAAGAGGAACAACAAC
CTGAACCAATGCAACCAGTTCAATCAAAATCAAGAAGAAAGATCACTTCTTTCGATATCC
CTTTCATTGGTTACACTTATCGTAATTTTGATGCCATGAGAGATGCCTTTGGTAGTGTAA
ACAGTAGAGATGCCTTTGGTAGTATAAATAGTAGAGAAGCTTTTGGTAGTATAAATAATA
GAGATTCTTTACAAGGTACAAATATGTAAACAGAACAAAAAAAAAAAAA

qllyifilfciiikkkkkkikk*kkkqtffipfvflflynqp*SLKKKKKKKKKNK---

---GTPDYTAPEVLMKDGYSAECDWWSVGVIMFEMLVGYPPFCSESIRETYHKIMNWKQT
LPKIMEEAKAEVNLSPEAQDLIERFLTDPMTRIGFNGVEEIQSHPFFKGVDWRRLRETRP
PIIPQLSSPTDTSNFDHYEEEQQPEPMQPVQSKSRRKITSFDIPFIGYTYRNFDAMRDAF
GSVNSRDAFGSINSREAFGSINNRDSLQGTNM*teqkkk

Frame A:
qllyifilfciiikkkkkkikk*kkkqtffipfvflflynqp*SLKKKKKKKKKNK---

---GTPDYTAPEVLMKDGYSAECDWWSVGVIMFEMLVGYPPFCSESIRETYHKIMNWKQT
LPKIMEEAKAEVNLSPEAQDLIERFLTDPMTRIGFNGVEEIQSHPFFKGVDWRRLRETRP
PIIPQLSSPTDTSNFDHYEEEQQPEPMQPVQSKSRRKITSFDIPFIGYTYRNFDAMRDAF
GSVNSRDAFGSINSREAFGSINNRDSLQGTNM*teqkkk

Frame B:
nyctylfyfvl*lkkkkkk*knkkknrlflfllyfyfciinhnh*kkkkkkkkkik---

---ehqtilhqky**kmvtvqsviggvlvllclkcwlvihhfvqnqlekpiirl*ignkh
yqkswkkqkqk*t*vqkhkislnvsspiq*lvlvlmvsrrfnlihslkvsiged*gkpdl
qsfhnslhqpilqilitmkrnnnlnqcnqfnqnqeersllsislslvtlivilmp*empl
vv*tvemplvv*ivekllvv*iieilykvqickqnkkkk

Frame C:
tivhiyfilyyn*kkkkknkkikkktdffysfcisifv*stiiikkkkkkkkkk*---

---ntrlyctrsiderwlqcrv*lvecwcyyv*nvgwlstilfrin*rnls*dyeletni
tknhgrsksrsklksrstrsh*tfphrsndsywf*wcrgdsissil*rcrlektkgnqts
nhsttlftnryfkf*sl*rgttt*tnatssikikkkdhffrypfhwlhls*f*cherclw
*ckq*rclw*yk**rsfw*yk**rfftrykyvnrtkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM651 (SSM651Q) /CSM/SS/SSM6-C/SSM651Q.Seq.d/                       1263   0.0
CFJ206 (CFJ206Q) /CSM/CF/CFJ2-A/CFJ206Q.Seq.d/                       1239   0.0
CFF849 (CFF849Q) /CSM/CF/CFF8-C/CFF849Q.Seq.d/                       1233   0.0
SSI880 (SSI880Q) /CSM/SS/SSI8-D/SSI880Q.Seq.d/                       1217   0.0
VFO102 (VFO102Q) /CSM/VF/VFO1-A/VFO102Q.Seq.d/                       1191   0.0
SFF332 (SFF332Q) /CSM/SF/SFF3-B/SFF332Q.Seq.d/                       1144   0.0
CFE380 (CFE380Q) /CSM/CF/CFE3-D/CFE380Q.Seq.d/                       1106   0.0
SHK872 (SHK872Q) /CSM/SH/SHK8-C/SHK872Q.Seq.d/                       1104   0.0
CFA456 (CFA456Q) /CSM/CF/CFA4-C/CFA456Q.Seq.d/                       1003   0.0
VFO434 (VFO434Q) /CSM/VF/VFO4-B/VFO434Q.Seq.d/                        948   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BX114811|BX114811.1 RZPD Homo sapiens cDNA clone IMAGp998B123866 = IMAGE:1526699 5' EST.    74  2e-12  2
E24614|E24614.1 warts Protein, polynucleotide encoding the protein, antisense polynucleotide thereof and antibody recognizing the protein.    74  4e-12  2
E24613|E24613.1 warts Protein, polynucleotide encoding the protein, antisense polynucleotide thereof and antibody recognizing the protein.    74  7e-12  2
AR310712|AR310712.1 Sequence 3 from patent US 6559285.            74  1e-11  2
AR201455|AR201455.1 Sequence 3 from patent US 6359193.            74  1e-11  2
AF164041|AF164041.1 Homo sapiens WARTS protein kinase (WARTS) mRNA, complete cds.    74  1e-11  2
AF104413|AF104413.1 Homo sapiens large tumor suppressor 1 (LATS1) mRNA, complete cds.    74  1e-11  2
AR266953|AR266953.1 Sequence 1 from patent US 6495353.            74  2e-11  2
BX276089|BX276089.8 Human DNA sequence from clone RP11-69I17 on chromosome 6.    74  1e-10  2
AL583963|AL583963.11 Human DNA sequence from clone RP1-203A15 on chromosome 6.    74  3e-09  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q6CFS5) RecName: Full=Serine/threonine-protein kinase CBK1;    ...   184   3e-45
FB811472_1(FB811472|pid:none) Sequence 30745 from Patent WO20080...   172   9e-42
S42864(S42864)protein kinase (EC 2.7.1.-) - common ice plant (fr...   172   2e-41
BC151309_1(BC151309|pid:none) Bos taurus serine/threonine kinase...   171   2e-41
AY335703_1(AY335703|pid:none) Synthetic construct Homo sapiens s...   171   3e-41
AM473649_2(AM473649|pid:none) Vitis vinifera contig VV78X065883....   171   3e-41
AK304862_1(AK304862|pid:none) Homo sapiens cDNA FLJ51774 complet...   171   3e-41
AK304755_1(AK304755|pid:none) Homo sapiens cDNA FLJ50384 complet...   171   3e-41
AC108873_10(AC108873|pid:none) Oryza sativa (japonica cultivar-g...   170   5e-41
BT065446_1(BT065446|pid:none) Zea mays full-length cDNA clone ZM...   169   1e-40

 psg: 0.54  gvh: 0.41  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.24  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 24.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for SSM651 is nuc

>SSM651F.Seq
CAACTATTGTACATATTTATTTTATTTTGTATTATAATTAAAAAAAAAAAAAAAAAAATA
AAAAAATAAAAAAAAAAACAGACTTTTTTTATTCCTTTTGTATTTCTATTTTTGTATAAT
CAACCATAATCATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAA----------

>SSM651Z.Seq
----------GGAACACCAGACTATACTGCACCAGAAGTATTGATGAAAGATGGTTACAG
TGCAGAGTGTGATTGGTGGAGTGTTGGTGTTATTATGTTTGAAATGTTGGTTGGTTATCC
ACCATTTTGTTCAGAATCAATTAGAGAAACCTATCATAAGATTATGAATTGGAAACAAAC
ATTACCAAAAATCATGGAAGAAGCAAAAGCAGAAGTAAACTTAAGTCCAGAAGCACAAGA
TCTCATTGAACGTTTCCTCACCGATCCAATGACTCGTATTGGTTTTAATGGTGTCGAGGA
GATTCAATCTCATCCATTCTTTAAAGGTGTCGATTGGAGAAGACTAAGGGAAACCAGACC
TCCAATCATTCCACAACTCTCTTCACCAACCGATACTTCAAATTTTGATCACTATGAAGA
GGAACAACAACCTGAACCAATGCAACCAGTTCAATCAAAATCAAGAAGAAAGATCACTTC
TTTCGATATCCCTTTCATTGGTTACACTTATCGTAATTTTGATGCCATGAGAGATGCCTT
TGGTAGTGTAAACAGTAGAGATGCCTTTGGTAGTATAAATAGTAGAGAAGCTTTTGGTAG
TATAAATAATAGAGATTCTTTACAAGGTACAAATATGTAAACAGAACAAAAAAAAAAAAA

>SSM651P.Seq
CAACTATTGTACATATTTATTTTATTTTGTATTATAATTAAAAAAAAAAAAAAAAAAATA
AAAAAATAAAAAAAAAAACAGACTTTTTTTATTCCTTTTGTATTTCTATTTTTGTATAAT
CAACCATAATCATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAA----------G
GAACACCAGACTATACTGCACCAGAAGTATTGATGAAAGATGGTTACAGTGCAGAGTGTG
ATTGGTGGAGTGTTGGTGTTATTATGTTTGAAATGTTGGTTGGTTATCCACCATTTTGTT
CAGAATCAATTAGAGAAACCTATCATAAGATTATGAATTGGAAACAAACATTACCAAAAA
TCATGGAAGAAGCAAAAGCAGAAGTAAACTTAAGTCCAGAAGCACAAGATCTCATTGAAC
GTTTCCTCACCGATCCAATGACTCGTATTGGTTTTAATGGTGTCGAGGAGATTCAATCTC
ATCCATTCTTTAAAGGTGTCGATTGGAGAAGACTAAGGGAAACCAGACCTCCAATCATTC
CACAACTCTCTTCACCAACCGATACTTCAAATTTTGATCACTATGAAGAGGAACAACAAC
CTGAACCAATGCAACCAGTTCAATCAAAATCAAGAAGAAAGATCACTTCTTTCGATATCC
CTTTCATTGGTTACACTTATCGTAATTTTGATGCCATGAGAGATGCCTTTGGTAGTGTAA
ACAGTAGAGATGCCTTTGGTAGTATAAATAGTAGAGAAGCTTTTGGTAGTATAAATAATA
GAGATTCTTTACAAGGTACAAATATGTAAACAGAACAAAAAAAAAAAAA