>SSM649 (SSM649Q) /CSM/SS/SSM6-C/SSM649Q.Seq.d/
XXXXXXXXXXAAATTCGGTGGTTTAAGAGATGGTTATTATATTCAAGGTAATTGTGCCAT
TATTATGTTTGATGTCACATCCCGTATTTCATACAAAAATGTTCCAAATTGGCACTCTGA
TTTAACCAGAGTTTGTGAAAACATCCCAATCGTTTTATGTGGTAACAAAGTTGATGTTAA
AGATCGTAAAGTCAAACCATCCCAAATAGTTTTCCATCGTAGATACAATTTATCATACTA
TGATGTTTCAGCCAAATCAAATTACAATTTCGAAAAACCATTCGTCTGGTTAACATCAAA
ACTCCTCGGTAACAAGGCTGTCACTCTCGTTCAACAACCAACCTTAAAATTACCAGAAAC
CGTTCTCGATTCCAACTTAATGAGTTTATATGAAAAAGAAGTCGCTGATGCTGCTGCCCT
CCCATTACCAGAAGACAATGATGACTTGTAAACAAATTTAAAAAAAAAAAACAATAAAAA
AAAATAATAATAATAATAATAAAGCCAACAATAAATTTCAATAAAAAAAAAAAAAAAAAA
AAA

---FGGLRDGYYIQGNCAIIMFDVTSRISYKNVPNWHSDLTRVCENIPIVLCGNKVDVKD
RKVKPSQIVFHRRYNLSYYDVSAKSNYNFEKPFVWLTSKLLGNKAVTLVQQPTLKLPETV
LDSNLMSLYEKEVADAAALPLPEDNDDL*tnlkkknnkkk******sqq*isikkkkkk

Frame A:
---nsvv*emviifkvivpllclmshpvfhtkmfqigtli*pefvktsqsfyvvtklmlk
ivksnhpk*fsivdtiyhtmmfqpnqitisknhssg*hqnssvtrlslsfnnqp*nyqkp
fsipt**vymkkkslmllpshyqktmmtckqi*kkktikknnnnnnkannkfq*kkkkkk


Frame B:
---irwfkrwllysr*lchyyv*chipyfiqkcsklal*fnqsl*khpnrfmw*qs*c*r
s*sqtipnsfps*iqfiil*cfsqiklqfrktirlvniktpr*qgchsrsttnlkitrnr
srfqlnefi*krsr*cccppitrrq**lvnkfkkkkq*kkiiiiiikptinfnkkkkkkk


Frame C:
---FGGLRDGYYIQGNCAIIMFDVTSRISYKNVPNWHSDLTRVCENIPIVLCGNKVDVKD
RKVKPSQIVFHRRYNLSYYDVSAKSNYNFEKPFVWLTSKLLGNKAVTLVQQPTLKLPETV
LDSNLMSLYEKEVADAAALPLPEDNDDL*tnlkkknnkkk******sqq*isikkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM649 (SSM649Q) /CSM/SS/SSM6-C/SSM649Q.Seq.d/                        890   0.0
SSI774 (SSI774Q) /CSM/SS/SSI7-D/SSI774Q.Seq.d/                        882   0.0
SSH886 (SSH886Q) /CSM/SS/SSH8-D/SSH886Q.Seq.d/                        882   0.0
SLA506 (SLA506Q) /CSM/SL/SLA5-A/SLA506Q.Seq.d/                        882   0.0
SSF367 (SSF367Q) /CSM/SS/SSF3-C/SSF367Q.Seq.d/                        874   0.0
SSD294 (SSD294Q) /CSM/SS/SSD2-D/SSD294Q.Seq.d/                        870   0.0
VSD229 (VSD229Q) /CSM/VS/VSD2-B/VSD229Q.Seq.d/                        868   0.0
VSI212 (VSI212Q) /CSM/VS/VSI2-A/VSI212Q.Seq.d/                        862   0.0
FC-BK10 (FC-BK10Q) /CSM/FC/FC-BK/FC-BK10Q.Seq.d/                      860   0.0
SSM382 (SSM382Q) /CSM/SS/SSM3-D/SSM382Q.Seq.d/                        858   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

L09720|L09720.1 Dictyostelium discoideum GTP-binding protein (TC4/RAN) mRNA, complete cds.   882  0.0  2
AX489114|AX489114.1 Sequence 6414 from Patent WO02053728.        115  1e-31  2
AF190700|AF190700.1 Candida albicans small G-protein Gsp1p (GSP1) gene, complete cds.   115  2e-31  2
CA758831|AAF60289.1, mRNA sequence.    64  1e-27  3
BU495396|BU495396.1 PfESToab72d08.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence.    72  8e-23  3
BM275423|BM275423.1 PfESToaa68f04.y1 Plasmodium falciparum 3D7 gametocyte cDNA library Plasmodium falciparum 3D7 cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence.    72  1e-22  3
BU496934|BU496934.1 PfESToab60h01.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence.    72  1e-22  3
BU498261|BU498261.1 PfESToab94h09.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence.    72  1e-22  3
BM273404|BM273404.1 PfESToaa50c11.y1 Plasmodium falciparum 3D7 gametocyte cDNA library Plasmodium falciparum 3D7 cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence.    72  2e-22  3
BI815642|BI815642.1 PfESToaa31a10.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence.    72  2e-22  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P33519) RecName: Full=GTP-binding nuclear protein Ran; AltName:...   301   7e-81
EF103373_1(EF103373|pid:none) Haliotis discus discus Ran-1-prov ...   218   6e-56
BT057518_1(BT057518|pid:none) Salmo salar clone ssal-rgb2-597-13...   217   1e-55
CP000499_469(CP000499|pid:none) Pichia stipitis CBS 6054 chromos...   217   2e-55
BT050245_1(BT050245|pid:none) Salmo salar clone ssal-eve-578-306...   217   2e-55
CR382138_83(CR382138|pid:none) Debaryomyces hansenii strain CBS7...   217   2e-55
(O17915) RecName: Full=GTP-binding nuclear protein ran-1; AltNam...   217   2e-55
(P52301) RecName: Full=GTP-binding nuclear protein Ran; AltName:...   216   2e-55
EF519305_1(EF519305|pid:none) Penicillium marneffei small GTPase...   216   3e-55
BC041293_1(BC041293|pid:none) Xenopus laevis RAN, member RAS onc...   216   4e-55

 psg: 0.89  gvh: 0.37  alm: 0.44  top: 0.57  tms: 0.00  mit: 0.17  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 24.0 %: cytoskeletal
	 20.0 %: cytoplasmic
	  8.0 %: peroxisomal
	  4.0 %: mitochondrial

>> prediction for SSM649 is nuc

>SSM649Z.Seq
----------AAATTCGGTGGTTTAAGAGATGGTTATTATATTCAAGGTAATTGTGCCAT
TATTATGTTTGATGTCACATCCCGTATTTCATACAAAAATGTTCCAAATTGGCACTCTGA
TTTAACCAGAGTTTGTGAAAACATCCCAATCGTTTTATGTGGTAACAAAGTTGATGTTAA
AGATCGTAAAGTCAAACCATCCCAAATAGTTTTCCATCGTAGATACAATTTATCATACTA
TGATGTTTCAGCCAAATCAAATTACAATTTCGAAAAACCATTCGTCTGGTTAACATCAAA
ACTCCTCGGTAACAAGGCTGTCACTCTCGTTCAACAACCAACCTTAAAATTACCAGAAAC
CGTTCTCGATTCCAACTTAATGAGTTTATATGAAAAAGAAGTCGCTGATGCTGCTGCCCT
CCCATTACCAGAAGACAATGATGACTTGTAAACAAATTTAAAAAAAAAAAACAATAAAAA
AAAATAATAATAATAATAATAAAGCCAACAATAAATTTCAATAAAAAAAAAAAAAAAAAA
AAA