>SSM642 (SSM642Q) /CSM/SS/SSM6-B/SSM642Q.Seq.d/
AAAAAAAAAAAAATAACAAAATAAAAATAATTAATTATTTCATTTATTTATTTATTAATT
AATTAATTATAAAAAAAATAGAAAAAAAAAAAAAAAAGAATGGAAGCTAAAACTCAATTT
GAATTAATAACAATTAAAAGTGAAGATGGATTTGATGAAAACGAACTTTCAGTTTTATTA
AAAAGTGATAGTGATTTTCATATGAATGGATTCATTTGGGGTCATTTGGCAGCAAAACAT
GTATATTCTAAATTAAATAGTAAATTGAAATCATTTGAACCAAAATCCAGATCATTAATG
AAATGATTAAAGCAATTACAGCAGTGACCGAATTCATAGAAGTGCATTACTACCATGAAG
AAGAGATAGCATGGAAGTTTTTAATTGAGCAACAGCAATGTCTATCGGAACCATTATTGA
CCATTGTCAAACCTCAACATACTCAATGGACTGAGATTAATAATGAAATGAAGGATTTGG
TGAAATCGTTGACTGAAAACCAAGAAATTAAAGATAAATCATCAAATGGATGGACTGAAT
CAATTTCAAAAGTGAAAGAAATCCTTCAAAAATTGACAGCTATGGTTTATAAAAGTTTTT
ATGATGAAGAAAGAATTATTATACCTGTTGTTTTAAGTTCAATCCCAAAGAGTAAACAAA
ATAAATTGGGTGAGAAAATGAATGAGAATGAAACTATGAAAAATGCACCAACTTCTAAAT
TTGTTTTAGGTGCAATCTTGGATGTTTGCAAAACTAATAAAGATTTAGATGAAAATGTTA
AAAAGGCAATTCCATGGGCTGTTAGAAAAGTAATTTTCCCATTAGCTCTTGAAAAGAATT
ATAATTGGTTCTCAGAATTTGTTGAAATTAAATAAATTTTTTTAAGAAATCTATTTTTAA
AAAAAAA

kkknnkikiinyfiylfin*liikkiekkkkkngs*nsi*innn*k*rwi**krtfsfik
k***fsyewihlgsfgsktcif*ik**ieii*TKIQIINEMIKAITAVTEFIEVHYYHEE
EIAWKFLIEQQQCLSEPLLTIVKPQHTQWTEINNEMKDLVKSLTENQEIKDKSSNGWTES
ISKVKEILQKLTAMVYKSFYDEERIIIPVVLSSIPKSKQNKLGEKMNENETMKNAPTSKF
VLGAILDVCKTNKDLDENVKKAIPWAVRKVIFPLALEKNYNWFSEFVEIK*iflrnlflk
k

Frame A:
kkkkitk*k*liisfiyllin*l*kk*kkkkkrmeaktqfelitiksedgfdenelsvll
ksdsdfhmngfiwghlaakhvysklnsklksfepksrslmk*lkqlqq*pns*kcittmk
kr*hgsf*lsnsnvyrnhy*plsnlnilnglrlimk*riw*nr*lktkklkinhqmdgln
qfqk*kksfkn*qlwfikvfmmkkellyllf*vqsqrvnkinwvrk*mrmkl*kmhqlln
lf*vqswmfakliki*mkmlkrqfhgllek*fsh*llkriiigsqnllklnkff*eiyf*
kk


Frame B:
kkkk*qnknn*lfhlfiy*linykknrkkkkkewklklnln**qlkvkmdlmktnfqfy*
kvivifi*mdsfgviwqqnmyiln*ivn*nhlnqnpdh**nd*snyssdrihrsallp*r
rdsmevfn*atamsigtiidhcqtstysmd*d***negfgeivd*kprn*r*iikwmd*i
nfksernpskidsygl*kfl**rknyytccfkfnpke*tk*ig*ene*e*nyekctnf*i
cfrcnlgclqn**rfr*kc*kgnsmgc*ksnfpiss*kel*lvlric*n*inffkksifk
kk


Frame C:
kkknnkikiinyfiylfin*liikkiekkkkkngs*nsi*innn*k*rwi**krtfsfik
k***fsyewihlgsfgsktcif*ik**ieii*TKIQIINEMIKAITAVTEFIEVHYYHEE
EIAWKFLIEQQQCLSEPLLTIVKPQHTQWTEINNEMKDLVKSLTENQEIKDKSSNGWTES
ISKVKEILQKLTAMVYKSFYDEERIIIPVVLSSIPKSKQNKLGEKMNENETMKNAPTSKF
VLGAILDVCKTNKDLDENVKKAIPWAVRKVIFPLALEKNYNWFSEFVEIK*iflrnlflk
k

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM642 (SSM642Q) /CSM/SS/SSM6-B/SSM642Q.Seq.d/                       1546   0.0
VSD872 (VSD872Q) /CSM/VS/VSD8-C/VSD872Q.Seq.d/                       1098   0.0
VSF733 (VSF733Q) /CSM/VS/VSF7-B/VSF733Q.Seq.d/                        940   0.0
VSI503 (VSI503Q) /CSM/VS/VSI5-A/VSI503Q.Seq.d/                        634   0.0
VSG781 (VSG781Q) /CSM/VS/VSG7-D/VSG781Q.Seq.d/                        519   e-146
SSF510 (SSF510Q) /CSM/SS/SSF5-A/SSF510Q.Seq.d/                         40   0.058
FC-AX18 (FC-AX18Q) /CSM/FC/FC-AX/FC-AX18Q.Seq.d/                       40   0.058
VFI778 (VFI778Q) /CSM/VF/VFI7-D/VFI778Q.Seq.d/                         38   0.23
SFL355 (SFL355Q) /CSM/SF/SFL3-C/SFL355Q.Seq.d/                         38   0.23
AHA765 (AHA765Q) /CSM/AH/AHA7-C/AHA765Q.Seq.d/                         38   0.23

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AE014822|AE014822.1 Plasmodium falciparum 3D7 chromosome 14 section 7 of 13 of the complete sequence.    32  0.036  13
BY469014|BY469014.1 Mus musculus melanocyte cDNA, RIKEN full-length enriched library, clone:G270058F11, 3' end partial sequence.    38  0.10  2
AL445565|AL445565.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3.    34  0.15  8
AE014821|AE014821.1 Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete sequence.    34  0.16  11
BX276127|BX276127.6 Zebrafish DNA sequence from clone CH211-80M22 in linkage group 20.    40  0.18  3
AB022918|AB022918.1 Homo sapiens mRNA for alpha2,3-sialyltransferase ST3Gal VI, complete cds.    48  0.19  1
BX640494|BX640494.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    40  0.23  4
BX470131|BX470131.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-175M2.    38  0.70  5
BG530265|BG530265.1 602559381F1 NIH_MGC_61 Homo sapiens cDNA clone IMAGE:4697012 5', mRNA sequence.    46  0.76  1
BI766551|BI766551.1 603052367F1 NIH_MGC_122 Homo sapiens cDNA clone IMAGE:5202040 5', mRNA sequence.    46  0.76  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000764_2444(CP000764|pid:none) Bacillus cereus subsp. cytotoxi...    43   0.013
T08700(T08700)hypothetical protein DKFZp564G013.1 - human (fragm...    38   0.54
AY354204_1(AY354204|pid:none) Homo sapiens retinoic acid induced...    38   0.54
AF155135_1(AF155135|pid:none) Homo sapiens novel retinal pigment...    38   0.54
AY317139_1(AY317139|pid:none) Homo sapiens RAI14 isoform mRNA, c...    38   0.54
BA000016_216(BA000016|pid:none) Clostridium perfringens str. 13 ...    38   0.54
AL050011_1(AL050011|pid:none) Homo sapiens mRNA; cDNA DKFZp564G0...    38   0.54
AE015929_1478(AE015929|pid:none) Staphylococcus epidermidis ATCC...    37   0.70
AB384179_1(AB384179|pid:none) Synthetic construct DNA, clone: pF...    37   0.91
CR382133_324(CR382133|pid:none) Debaryomyces hansenii strain CBS...    37   0.91

 psg: 0.82  gvh: 0.47  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SSM642 is cyt

>SSM642F.Seq
AAAAAAAAAAAAATAACAAAATAAAAATAATTAATTATTTCATTTATTTATTTATTAATT
AATTAATTATAAAAAAAATAGAAAAAAAAAAAAAAAAGAATGGAAGCTAAAACTCAATTT
GAATTAATAACAATTAAAAGTGAAGATGGATTTGATGAAAACGAACTTTCAGTTTTATTA
AAAAGTGATAGTGATTTTCATATGAATGGATTCATTTGGGGTCATTTGGCAGCAAAACAT
GTATATTCTAAATTAAATAGTAAATTGAAATCATTTGAACCAAAATCCAGATCAGAAATT
AATGAAATGATTAAAGCAATTACAGCAGTGACCGAATTCATAGAAGTGCATTACTACCAT
GAAGAAGAGATAGCATGGAAGTTTTTAATTGAGCAACAGCAATGTCTATCGGAACCATTA
TTGACCATTGTCAAACCTCAACATACTCAATGGACTGAGATTAATAATGAAATGAAGGAT
TTGGTGAAATCGTTGACTGAAAACCAAGAAATTAAAGATAAATCATCAAATGGATGGACT
GAATCAATTTCAAAAGTGAAAGAAATCCTTCAAAAATTGACAGCTATGGTTTATAAAAGT
TTTTATGATGAAGAAAGAATTATTATACCTGTTGTTTTAAGTTCAATCCCAAAGAGTAAA
CAAAATAAATTGGGTGAGAAAATGAATGA----------

>SSM642Z.Seq
----------TTAATGAAATGATTAAAGCAATTACAGCAGTGACCGAATTCATAGAAGTG
CATTACTACCATGAAGAAGAGATAGCATGGAAGTTTTTAATTGAGCAACAGCAATGTCTA
TCGGAACCATTATTGACCATTGTCAAACCTCAACATACTCAATGGACTGAGATTAATAAT
GAAATGAAGGATTTGGTGAAATCGTTGACTGAAAACCAAGAAATTAAAGATAAATCATCA
AATGGATGGACTGAATCAATTTCAAAAGTGAAAGAAATCCTTCAAAAATTGACAGCTATG
GTTTATAAAAGTTTTTATGATGAAGAAAGAATTATTATACCTGTTGTTTTAAGTTCAATC
CCAAAGAGTAAACAAAATAAATTGGGTGAGAAAATGAATGAAACTATGAAAAATGCACCA
ACTTCTAAATTTGTTTTAGGTGCAATCTTGGATGTTTGCAAAACTAATAAAGATTTAGAT
GAAAATGTTAAAAAGGCAATTCCATGGGCTGTTAGAAAAGTAATTTTCCCATTAGCTCTT
GAAAAGAATTATAATTGGTTCTCAGAATTTGTTGAAATTAAATAAATTTTTTTAAGAAAT
CTATTTTTAAAAAAAAAAAAAAAAAAA

>SSM642P.Seq
AAAAAAAAAAAAATAACAAAATAAAAATAATTAATTATTTCATTTATTTATTTATTAATT
AATTAATTATAAAAAAAATAGAAAAAAAAAAAAAAAAGAATGGAAGCTAAAACTCAATTT
GAATTAATAACAATTAAAAGTGAAGATGGATTTGATGAAAACGAACTTTCAGTTTTATTA
AAAAGTGATAGTGATTTTCATATGAATGGATTCATTTGGGGTCATTTGGCAGCAAAACAT
GTATATTCTAAATTAAATAGTAAATTGAAATCATTTGAACCAAAATCCAGATCAGAAATT
AATGAAATGATTAAAGCAATTACAGCAGTGACCGAATTCATAGAAGTGCATTACTACCAT
GAAGAAGAGATAGCATGGAAGTTTTTAATTGAGCAACAGCAATGTCTATCGGAACCATTA
TTGACCATTGTCAAACCTCAACATACTCAATGGACTGAGATTAATAATGAAATGAAGGAT
TTGGTGAAATCGTTGACTGAAAACCAAGAAATTAAAGATAAATCATCAAATGGATGGACT
GAATCAATTTCAAAAGTGAAAGAAATCCTTCAAAAATTGACAGCTATGGTTTATAAAAGT
TTTTATGATGAAGAAAGAATTATTATACCTGTTGTTTTAAGTTCAATCCCAAAGAGTAAA
CAAAATAAATTGGGTGAGAAAATGAATGA----------TTAATGAAATGATTAAAGCAA
TTACAGCAGTGACCGAATTCATAGAAGTGCATTACTACCATGAAGAAGAGATAGCATGGA
AGTTTTTAATTGAGCAACAGCAATGTCTATCGGAACCATTATTGACCATTGTCAAACCTC
AACATACTCAATGGACTGAGATTAATAATGAAATGAAGGATTTGGTGAAATCGTTGACTG
AAAACCAAGAAATTAAAGATAAATCATCAAATGGATGGACTGAATCAATTTCAAAAGTGA
AAGAAATCCTTCAAAAATTGACAGCTATGGTTTATAAAAGTTTTTATGATGAAGAAAGAA
TTATTATACCTGTTGTTTTAAGTTCAATCCCAAAGAGTAAACAAAATAAATTGGGTGAGA
AAATGAATGAAACTATGAAAAATGCACCAACTTCTAAATTTGTTTTAGGTGCAATCTTGG
ATGTTTGCAAAACTAATAAAGATTTAGATGAAAATGTTAAAAAGGCAATTCCATGGGCTG
TTAGAAAAGTAATTTTCCCATTAGCTCTTGAAAAGAATTATAATTGGTTCTCAGAATTTG
TTGAAATTAAATAAATTTTTTTAAGAAATCTATTTTTAAAAAAAAAAAAAAAAAAA

>SSM642E.Seq
AAAAAAAAAAAAATAACAAAATAAAAATAATTAATTATTTCATTTATTTATTTATTAATT
AATTAATTATAAAAAAAATAGAAAAAAAAAAAAAAAAGAATGGAAGCTAAAACTCAATTT
GAATTAATAACAATTAAAAGTGAAGATGGATTTGATGAAAACGAACTTTCAGTTTTATTA
AAAAGTGATAGTGATTTTCATATGAATGGATTCATTTGGGGTCATTTGGCAGCAAAACAT
GTATATTCTAAATTAAATAGTAAATTGAAATCATTTGAACCAAAATCCAGATCATTAATG
AAATGATTAAAGCAATTACAGCAGTGACCGAATTCATAGAAGTGCATTACTACCATGAAG
AAGAGATAGCATGGAAGTTTTTAATTGAGCAACAGCAATGTCTATCGGAACCATTATTGA
CCATTGTCAAACCTCAACATACTCAATGGACTGAGATTAATAATGAAATGAAGGATTTGG
TGAAATCGTTGACTGAAAACCAAGAAATTAAAGATAAATCATCAAATGGATGGACTGAAT
CAATTTCAAAAGTGAAAGAAATCCTTCAAAAATTGACAGCTATGGTTTATAAAAGTTTTT
ATGATGAAGAAAGAATTATTATACCTGTTGTTTTAAGTTCAATCCCAAAGAGTAAACAAA
ATAAATTGGGTGAGAAAATGAATGAGAATGAAACTATGAAAAATGCACCAACTTCTAAAT
TTGTTTTAGGTGCAATCTTGGATGTTTGCAAAACTAATAAAGATTTAGATGAAAATGTTA
AAAAGGCAATTCCATGGGCTGTTAGAAAAGTAATTTTCCCATTAGCTCTTGAAAAGAATT
ATAATTGGTTCTCAGAATTTGTTGAAATTAAATAAATTTTTTTAAGAAATCTATTTTTAA
AAAAAAA