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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSM640
Library SS
(Link to library)
Clone ID SSM640
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U04645-1
Original site URL
Representative seq. ID SSM640E
(Link to Original site)
Representative DNA sequence 
>SSM640 (SSM640Q) /CSM/SS/SSM6-B/SSM640Q.Seq.d/
ATTTTTAAAACATTAAATAAAATAAAATAATAAAGAATGACAATAAGTGGATCATTTTCA
TCTTTTGGTACTACCAATTCACTTAATGTAAAAAATAATCAAAATCATTTTCTATCAACA
TCTCCAAATTTAAATGGTAATTCAATATTATCAAGCTCATTTGGTGGATCATCATCATTC
CAAAATTCAAACTACCTTATTGCTTCAGTAAACTCAACTGTGATTACTGAAAGTTTTAAA
CTTCTTGATAATCCATGGTAAAAACAAATCTGAAATAGTTTACAAAGTCACCAAAAAAAA
AAAAAAAAAATTGTAACAACATCTTAAATTATTTTTAAAAAAAATATTTATTTAAATAAA
AAAAAGTGTAGTTTTAATGTTTTCTAGTACAATAAGAGAAAAAAAAAATATATATATATT
T
sequence update 1998. 3.12
Translated Amino Acid sequence 
ifktlnkik**RMTISGSFSSFGTTNSLNVKNNQNHFLSTSPNLNGNSILSSSFGGSSSF
QNSNYLIASVNSTVITESFKLLDNPW*kqi*nslqshqkkkkkivtts*iifkkniylnk
kkcsfnvf*ynkrkkkyiyi
Translated Amino Acid sequence (All Frames) 
Frame A:
ifktlnkik**RMTISGSFSSFGTTNSLNVKNNQNHFLSTSPNLNGNSILSSSFGGSSSF
QNSNYLIASVNSTVITESFKLLDNPW*kqi*nslqshqkkkkkivtts*iifkkniylnk
kkcsfnvf*ynkrkkkyiyi


Frame B:
flkh*ik*nnke*q*vdhfhllvlpihlm*kiikiifyqhlqi*mviqyyqahlvdhhhs
kiqttlllq*tql*llkvlnfliihgknkseivykvtkkkkkkl*qhlklflkkifi*ik
ksvvlmfsstirekkniyif


Frame C:
f*nik*nkiikndnkwiififwyyqft*ckk*sksfsiniskfkw*fniikliwwiiiip
kfklpycfsklncdy*kf*ts**smvktnlk*ftkspkkkkkncnnilnyf*kkylfk*k
kv*f*cflvq*ekkkiyiy
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM640 (SSM640Q) /CSM/SS/SSM6-B/SSM640Q.Seq.d/                        511   e-144
SSC126 (SSC126Q) /CSM/SS/SSC1-B/SSC126Q.Seq.d/                        511   e-144
VFH694 (VFH694Q) /CSM/VF/VFH6-D/VFH694Q.Seq.d/                         40   0.026
SFJ291 (SFJ291Q) /CSM/SF/SFJ2-D/SFJ291Q.Seq.d/                         40   0.026
SFE671 (SFE671Q) /CSM/SF/SFE6-C/SFE671Q.Seq.d/                         40   0.026
SFD761 (SFD761Q) /CSM/SF/SFD7-C/SFD761Q.Seq.d/                         40   0.026
CFH536 (CFH536Q) /CSM/CF/CFH5-B/CFH536Q.Seq.d/                         40   0.026
CFG430 (CFG430Q) /CSM/CF/CFG4-B/CFG430Q.Seq.d/                         40   0.026
CFC467 (CFC467Q) /CSM/CF/CFC4-C/CFC467Q.Seq.d/                         40   0.026
AFI191 (AFI191Q) /CSM/AF/AFI1-D/AFI191Q.Seq.d/                         40   0.026
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116925|AC116925.2 Dictyostelium discoideum chromosome 2 map 4189423-4228998 strain AX4, complete sequence.   484  e-144  4
AC120874|AC120874.3 Mus musculus clone RP23-285H4, WORKING DRAFT SEQUENCE, 49 unordered pieces.    50  0.022  1
AC011021|AC011021.3 Homo sapiens chromosome 3 clone RP11-408M18 map 3, WORKING DRAFT SEQUENCE, 17 unordered pieces.    36  0.34  5
AC117618|AC117618.3 Mus musculus clone RP23-111F17, WORKING DRAFT SEQUENCE, 3 ordered pieces.    46  0.34  1
AC113100|AC113100.3 Mus musculus clone RP23-317I17, WORKING DRAFT SEQUENCE, 7 ordered pieces.    46  0.34  1
AC132878|AC132878.3 Mus musculus clone RP24-223D21, WORKING DRAFT SEQUENCE, 5 unordered pieces.    46  0.34  1
AC118710|AC118710.3 Mus musculus clone RP24-121C9, WORKING DRAFT SEQUENCE, 2 ordered pieces.    46  0.34  1
Z80217|Z80217.1 Caenorhabditis elegans cosmid F37B1.              44  1.4  1
AC136215|AC136215.1 Mus musculus chromosome UNK clone RP23-148L8, WORKING DRAFT SEQUENCE, 42 unordered pieces.    44  1.4  1
BJ132140|BJ132140.1 Caenorhabditis elegans cDNA clone:yk1062f02 : 3' end, single read.    44  1.4  1
dna update 2003. 8.15
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 426,555,235
protein update 2009. 7. 9
PSORT 

 psg: 0.90  gvh: 0.57  alm: 0.43  top: 0.50  tms: 0.00  mit: 0.53  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: extracellular, including cell wall
	  8.0 %: vacuolar
	  4.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: Golgi

>> prediction for SSM640 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSM640E
Full length Seq. 
>SSM640E.Seq
ATTTTTAAAACATTAAATAAAATAAAATAATAAAGAATGACAATAAGTGGATCATTTTCA
TCTTTTGGTACTACCAATTCACTTAATGTAAAAAATAATCAAAATCATTTTCTATCAACA
TCTCCAAATTTAAATGGTAATTCAATATTATCAAGCTCATTTGGTGGATCATCATCATTC
CAAAATTCAAACTACCTTATTGCTTCAGTAAACTCAACTGTGATTACTGAAAGTTTTAAA
CTTCTTGATAATCCATGGTAAAAACAAATCTGAAATAGTTTACAAAGTCACCAAAAAAAA
AAAAAAAAAATTGTAACAACATCTTAAATTATTTTTAAAAAAAATATTTATTTAAATAAA
AAAAAGTGTAGTTTTAATGTTTTCTAGTACAATAAGAGAAAAAAAAAATATATATATATT
T
Length of full length seq. 421