>SSM635 (SSM635Q) /CSM/SS/SSM6-B/SSM635Q.Seq.d/
XXXXXXXXXXATCACACAACTTACAAGAAATTAGAATTACATTTTGTCAATCCAATCAAA
GTAGTGAAGGTTTGAGAAACTTTGTTGTAAAGAATTACTCTGATTTAAAAAGATTAAATC
CAAAATTACCATTACTCATTCGTGAAGGTCATGGTGTTGAACCAGTAATTTACGCTCGTT
ATGATTGGGGTAAAGAAGAAAAGAAAGTTGTTACTAATTTAACCGAACAAGAAGTTGAAG
AGAAATTAAAAGAATTATGTTTAATGGGTAGTAAATTCGATAAATCACCAGAAAGTGAAT
TTGATGAAGTTGATATCGTATCTGCTTATCAAAAACCAATGTTAAATTATAGACCAATTN
NNTAGATAAAATCGAACGTGTCATATAATTAATAAATAATAATTACAATAATATAATAAT
AACAATAATAATAATAATAATAATAATTTTACCATTTTTTTTATTATAAAATAGATTTTT
AATAAATTTAATAATTTAATTTATAAATAATAATAATAATGATAATAATAGTAATAGTAA
AACCATA

---SHNLQEIRITFCQSNQSSEGLRNFVVKNYSDLKRLNPKLPLLIREGHGVEPVIYARY
DWGKEEKKVVTNLTEQEVEEKLKELCLMGSKFDKSPESEFDEVDIVSAYQKPMLNYRPIX
*iksnvsyn**iiitii***q*******fyhffyykidf**i**fnl*iiiimiiivivk
p

Frame A:
---SHNLQEIRITFCQSNQSSEGLRNFVVKNYSDLKRLNPKLPLLIREGHGVEPVIYARY
DWGKEEKKVVTNLTEQEVEEKLKELCLMGSKFDKSPESEFDEVDIVSAYQKPMLNYRPIX
*iksnvsyn**iiitii***q*******fyhffyykidf**i**fnl*iiiimiiivivk
p


Frame B:
---httykklelhfvnpikvvkv*etll*ritli*kd*iqnyhysfvkvmvlnq*ftlvm
igvkkkrkllli*pnkklkrn*knyv*wvvnsinhqkvnlmklisylliknqc*iidqxx
r*nrtchiink**lq*ynnnnnnnnnnnftiffiik*ifnkfnnliyk***********n
h


Frame C:
---tqltrn*nyilsiqsk**rfeklcckell*fkkikskitiths*rswc*tsnlrsl*
lg*rrkescy*fnrtrs*reikrimfng**ir*itrk*i**s*yriclsktnvkl*tnxx
dkiervi*linnnynniiitiiiiiiiilpffll*nrflinlii*finnnnndnnsnskt
i

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM635 (SSM635Q) /CSM/SS/SSM6-B/SSM635Q.Seq.d/                        720   0.0
VSK277 (VSK277Q) /CSM/VS/VSK2-D/VSK277Q.Seq.d/                        712   0.0
VSJ611 (VSJ611Q) /CSM/VS/VSJ6-A/VSJ611Q.Seq.d/                        712   0.0
SSM729 (SSM729Q) /CSM/SS/SSM7-B/SSM729Q.Seq.d/                        712   0.0
SSJ681 (SSJ681Q) /CSM/SS/SSJ6-D/SSJ681Q.Seq.d/                        712   0.0
SSB385 (SSB385Q) /CSM/SS/SSB3-D/SSB385Q.Seq.d/                        500   e-140
SSB550 (SSB550Q) /CSM/SS/SSB5-C/SSB550Q.Seq.d/                        466   e-130
VSB476 (VSB476Q) /CSM/VS/VSB4-D/VSB476Q.Seq.d/                        240   2e-62
VSF690 (VSF690Q) /CSM/VS/VSF6-D/VSF690Q.Seq.d/                         38   0.14
CHQ296 (CHQ296Q) /CSM/CH/CHQ2-D/CHQ296Q.Seq.d/                         38   0.14

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.   363  0.0  2
AC136664|AC136664.2 Rattus norvegicus clone CH230-229G9, WORKING DRAFT SEQUENCE, 3 unordered pieces.    48  0.11  1
BX323061|BX323061.6 Mouse DNA sequence from clone RP24-267L10 on chromosome 11.    46  0.45  1
AW570934|AW570934.1 ra13a02.y1 Bird-Rao Meloidogyne incognita J2 Meloidogyne incognita cDNA 5', mRNA sequence.    44  1.8  1
AC021774|AC021774.3 Homo sapiens clone RP11-13C18, WORKING DRAFT SEQUENCE, 10 unordered pieces.    44  1.8  1
AW571311|AW571311.1 ra16g10.y2 Bird-Rao Meloidogyne incognita J2 Meloidogyne incognita cDNA 5', mRNA sequence.    44  1.8  1
AW571255|AW571255.1 ra16b04.y2 Bird-Rao Meloidogyne incognita J2 Meloidogyne incognita cDNA 5', mRNA sequence.    44  1.8  1
BM774742|BM774742.1 ra97b02.y1 Meloidogyne incognita egg pAMP1 Bird Meloidogyne incognita cDNA 5', mRNA sequence.    44  1.8  1
AC011836|AC011836.3 Homo sapiens chromosome 11 clone RP11-151J24 map 11, WORKING DRAFT SEQUENCE, 8 unordered pieces.    44  1.8  1
BM880766|BM880766.1 rb18a09.y1 Meloidogyne incognita egg pAMP1 Bird Meloidogyne incognita cDNA 5', mRNA sequence.    44  1.8  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116963_90(AC116963|pid:none) Dictyostelium discoideum chromoso...   233   3e-60
EF144500_1(EF144500|pid:none) Populus trichocarpa clone PX0019_N...    92   7e-18
EF146609_1(EF146609|pid:none) Populus trichocarpa clone WS01210_...    89   1e-16
BT071647_1(BT071647|pid:none) Picea sitchensis clone WS0294_D08 ...    88   1e-16
EU965985_1(EU965985|pid:none) Zea mays clone 290586 NADH-ubiquin...    88   1e-16
EU963095_1(EU963095|pid:none) Zea mays clone 257497 NADH-ubiquin...    88   2e-16
AY347482_1(AY347482|pid:none) Chlamydomonas reinhardtii NADH:ubi...    84   2e-15
AB016886_23(AB016886|pid:none) Arabidopsis thaliana genomic DNA,...    83   4e-15
BC135400_1(BC135400|pid:none) Xenopus tropicalis hypothetical pr...    83   5e-15
AM270279_15(AM270279|pid:none) Aspergillus niger contig An12c023...    80   3e-14

 psg: 0.73  gvh: 0.45  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for SSM635 is cyt

>SSM635Z.Seq
----------ATCACACAACTTACAAGAAATTAGAATTACATTTTGTCAATCCAATCAAA
GTAGTGAAGGTTTGAGAAACTTTGTTGTAAAGAATTACTCTGATTTAAAAAGATTAAATC
CAAAATTACCATTACTCATTCGTGAAGGTCATGGTGTTGAACCAGTAATTTACGCTCGTT
ATGATTGGGGTAAAGAAGAAAAGAAAGTTGTTACTAATTTAACCGAACAAGAAGTTGAAG
AGAAATTAAAAGAATTATGTTTAATGGGTAGTAAATTCGATAAATCACCAGAAAGTGAAT
TTGATGAAGTTGATATCGTATCTGCTTATCAAAAACCAATGTTAAATTATAGACCAATTN
NNTAGATAAAATCGAACGTGTCATATAATTAATAAATAATAATTACAATAATATAATAAT
AACAATAATAATAATAATAATAATAATTTTACCATTTTTTTTATTATAAAATAGATTTTT
AATAAATTTAATAATTTAATTTATAAATAATAATAATAATGATAATAATAGTAATAGTAA
AACCATA