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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSM631
Library SS
(Link to library)
Clone ID SSM631
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U02015-1|Contig-U16581-1
Original site URL
Representative seq. ID SSM631P
(Link to Original site)
Representative DNA sequence 
>SSM631 (SSM631Q) /CSM/SS/SSM6-B/SSM631Q.Seq.d/
TAGAAATCAATTATTACAACAAACTAAACAATTGGGAATGTTACAAAATGAAAACTATTT
AAAGATTAATCAATTAGAAGAACAAATTGAAAGTNCTCTTAGAGAGAATAATGATTTAAA
ATCAAGATTATCAGACTTATTATCAAAACAACAACCTCATGATAATAGTAATAGTAATAG
TAATAGTAATAATAATAGCAATGTTTCTCCAAATAATAGTATAAACATTTTAAATAATAA
TAATAGTAGTAGTAGTAATAATAATAATAATAATAGTAATAGTAATAATGGAGGAATTGG
CTCATTNAGTANNATTTTAAATAATAATATTAATAATAATATATCATCATCATCACCATC
AACACCATCATGTTCATCACCATCATTTTTAGAGGGCAGACATTTCTCTCATTTACAACA
GCAACAACAACAACAACCACAACAACAAAATTCACCACAAATACTACAATCACCAATACC
ATTACAACACTCACCATTACCAATACAACAGATATCACCATCATCACCAAATCAAAATXX
XXXXXXXXATAATAATAATAATAATATAAAATTAAATGGTAGTGGTGATATGGATACTTC
GTCTGATAATAATAGCAGTATGAATATAAATAGTATAAATAATAGTTCAAATTTAAATGG
ATTTAATGGTTTATCATCACCTAATCAACAACCNATTCACCATCAAATAGATCACAACCA
AGAGACAAAGAGATTTATTTTTACAACAACAACAACAACAACAACATTCCTATGCAACTC
TCTCAAATGTATAAGCAGTCTTTAACAAAAAAAAATNTTTTTTAAAAAAAAAAAAAGAAA
AAAAAAAAATATTAAAATATTTTTTTCAAAATCAATTTTAAATATAAATAATAATGTTTT
TTTTTTTTTTATAAAAAAAAGAAAG
sequence update 1998.12. 3
Translated Amino Acid sequence 
RNQLLQQTKQLGMLQNENYLKINQLEEQIESXLRENNDLKSRLSDLLSKQQPHDNSNSNS
NSNNNSNVSPNNSINILNNNNSSSSNNNNNNSNSNNGGIGSXSXILNNNINNNISSSSPS
TPSCSSPSFLEGRHFSHLQQQQQQQPQQQNSPQILQSPIPLQHSPLPIQQISPSSPNQN-
--

---NNNNNIKLNGSGDMDTSSDNNSSMNINSINNSSNLNGFNGLSSPNQQPIHHQIDHNQ
ETKRFIFTTTTTTTTFLCNSLKCISSL*qkkxffkkkkrkkknikiffsksilninnnvf
fffikkrk
Translated Amino Acid sequence (All Frames) 
Frame A:
*ksiittn*tignvtk*klfkd*sirrtn*kxs*re**fkikiirliikttts*******
******qcfsk**ykhfk******************wrnwlixxxfk**y***yiiiiti
ntimfitiifrgqtflsfttattttttttkfttnttitntittltitnttditiitksk-
--

---iiiiii*n*mvvviwilrliiiav*i*iv*iivqi*mdlmvyhhlinnxftik*itt
krqrdlflqqqqqqqhsyatlsnv*avfnkkkxflkkkkekkkilkyffqnqf*i*iimf
fffl*kke

Frame B:
RNQLLQQTKQLGMLQNENYLKINQLEEQIESXLRENNDLKSRLSDLLSKQQPHDNSNSNS
NSNNNSNVSPNNSINILNNNNSSSSNNNNNNSNSNNGGIGSXSXILNNNINNNISSSSPS
TPSCSSPSFLEGRHFSHLQQQQQQQPQQQNSPQILQSPIPLQHSPLPIQQISPSSPNQN-
--

---*****ykikw*w*ygyfv****qyeyk*yk**fkfkwi*wfiit*sttxspsnrsqp
rdkeiyfynnnnnnnipmqlsqmykqsltkknxf*kkkkkkkky*niffkinfkyk**cf
fffykkkk

Frame C:
einyynklnnwecykmkti*rlin*knklkvllerimi*nqdyqtyyqnnnlmiiviviv
iviiiamflqiiv*tf*iiiivvvviiiiiivivimeelahxvxf*iiiliiiyhhhhhq
hhhvhhhhf*radisliynsnnnnnhnnkihhkyynhqyhynthhyqynryhhhhqik--
-

---NNNNNIKLNGSGDMDTSSDNNSSMNINSINNSSNLNGFNGLSSPNQQPIHHQIDHNQ
ETKRFIFTTTTTTTTFLCNSLKCISSL*qkkxffkkkkrkkknikiffsksilninnnvf
fffikkrk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM631 (SSM631Q) /CSM/SS/SSM6-B/SSM631Q.Seq.d/                        337   2e-91
SSM762 (SSM762Q) /CSM/SS/SSM7-C/SSM762Q.Seq.d/                         94   5e-18
SSM602 (SSM602Q) /CSM/SS/SSM6-A/SSM602Q.Seq.d/                         94   5e-18
SSI739 (SSI739Q) /CSM/SS/SSI7-B/SSI739Q.Seq.d/                         94   5e-18
SSI732 (SSI732Q) /CSM/SS/SSI7-B/SSI732Q.Seq.d/                         94   5e-18
SSI390 (SSI390Q) /CSM/SS/SSI3-D/SSI390Q.Seq.d/                         94   5e-18
SSG779 (SSG779Q) /CSM/SS/SSG7-D/SSG779Q.Seq.d/                         94   5e-18
SSD206 (SSD206Q) /CSM/SS/SSD2-A/SSD206Q.Seq.d/                         94   5e-18
SSM655 (SSM655Q) /CSM/SS/SSM6-C/SSM655Q.Seq.d/                         88   3e-16
VSA585 (VSA585Q) /CSM/VS/VSA5-D/VSA585Q.Seq.d/                         86   1e-15
own update 2005. 1. 1
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116919|AC116919.2 Dictyostelium discoideum chromosome 2 map complement(6245035-6206343) strain AX4, complete sequence.   311  0.0  9
D16417|D16417.1 Dictyostelium discoideum mRNA.                    86  4e-29  2
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34  0.006  12
AL808122|AL808122.5 Mouse DNA sequence from clone RP23-445J18 on chromosome X.    48  0.007  3
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    36  0.010  8
Z98547|Z98547.2 Plasmodium falciparum MAL3P3.                     38  0.038  5
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    40  0.042  10
AC034226|AC034226.6 Homo sapiens chromosome 5 clone CTD-2130F23, complete sequence.    38  0.052  6
AC117080|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence.    48  0.059  6
AF452048|AF452048.1 Pyrocoelia rufa mitochondrion, complete genome.    40  0.18  4
dna update 2003. 8.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116919_11(AC116919|pid:none) Dictyostelium discoideum chromoso...    80   7e-14
protein update 2009. 2. 4
PSORT 

 psg: 0.64  gvh: 0.27  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 24.0 %: mitochondrial
	 20.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for SSM631 is nuc
5' end seq. ID SSM631F
5' end seq. 
>SSM631F.Seq
TAGAAATCAATTATTACAACAAACTAAACAATTGGGAATGTTACAAAATGAAAACTATTT
AAAGATTAATCAATTAGAAGAACAAATTGAAAGTNCTCTTAGAGAGAATAATGATTTAAA
ATCAAGATTATCAGACTTATTATCAAAACAACAACCTCATGATAATAGTAATAGTAATAG
TAATAGTAATAATAATAGCAATGTTTCTCCAAATAATAGTATAAACATTTTAAATAATAA
TAATAGTAGTAGTAGTAATAATAATAATAATAATAGTAATAGTAATAATGGAGGAATTGG
CTCATTNAGTANNATTTTAAATAATAATATTAATAATAATATATCATCATCATCACCATC
AACACCATCATGTTCATCACCATCATTTTTAGAGGGCAGACATTTCTCTCATTTACAACA
GCAACAACAACAACAACCACAACAACAAAATTCACCACAAATACTACAATCACCAATACC
ATTACAACACTCACCATTACCAATACAACAGATATCACCATCATCACCAAATCAAAAT--
--------
Length of 5' end seq. 538
3' end seq. ID SSM631Z
3' end seq. 
>SSM631Z.Seq
----------ATAATAATAATAATAATATAAAATTAAATGGTAGTGGTGATATGGATACT
TCGTCTGATAATAATAGCAGTATGAATATAAATAGTATAAATAATAGTTCAAATTTAAAT
GGATTTAATGGTTTATCATCACCTAATCAACAACCNATTCACCATCAAATAGATCACAAC
CAAGAGACAAAGAGATTTATTTTTACAACAACAACAACAACAACAACATTCCTATGCAAC
TCTCTCAAATGTATAAGCAGTCTTTAACAAAAAAAAATNTTTTTTAAAAAAAAAAAAAGA
AAAAAAAAAAATATTAAAATATTTTTTTCAAAATCAATTTTAAATATAAATAATAATGTT
TTTTTTTTTTTTATAAAAAAAAGAAAG
Length of 3' end seq. 377
Connected seq. ID SSM631P
Connected seq. 
>SSM631P.Seq
TAGAAATCAATTATTACAACAAACTAAACAATTGGGAATGTTACAAAATGAAAACTATTT
AAAGATTAATCAATTAGAAGAACAAATTGAAAGTNCTCTTAGAGAGAATAATGATTTAAA
ATCAAGATTATCAGACTTATTATCAAAACAACAACCTCATGATAATAGTAATAGTAATAG
TAATAGTAATAATAATAGCAATGTTTCTCCAAATAATAGTATAAACATTTTAAATAATAA
TAATAGTAGTAGTAGTAATAATAATAATAATAATAGTAATAGTAATAATGGAGGAATTGG
CTCATTNAGTANNATTTTAAATAATAATATTAATAATAATATATCATCATCATCACCATC
AACACCATCATGTTCATCACCATCATTTTTAGAGGGCAGACATTTCTCTCATTTACAACA
GCAACAACAACAACAACCACAACAACAAAATTCACCACAAATACTACAATCACCAATACC
ATTACAACACTCACCATTACCAATACAACAGATATCACCATCATCACCAAATCAAAAT--
--------ATAATAATAATAATAATATAAAATTAAATGGTAGTGGTGATATGGATACTTC
GTCTGATAATAATAGCAGTATGAATATAAATAGTATAAATAATAGTTCAAATTTAAATGG
ATTTAATGGTTTATCATCACCTAATCAACAACCNATTCACCATCAAATAGATCACAACCA
AGAGACAAAGAGATTTATTTTTACAACAACAACAACAACAACAACATTCCTATGCAACTC
TCTCAAATGTATAAGCAGTCTTTAACAAAAAAAAATNTTTTTTAAAAAAAAAAAAAGAAA
AAAAAAAAATATTAAAATATTTTTTTCAAAATCAATTTTAAATATAAATAATAATGTTTT
TTTTTTTTTTATAAAAAAAAGAAAG
Length of connected seq. 915
Full length Seq ID -
Full length Seq. -
Length of full length seq. -