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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFL843
Library AF
(Link to library)
Clone ID AFL843
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AFL843 (AFL843Q) /CSM/AF/AFL8-B/AFL843Q.Seq.d/
XXXXXXXXXXTTTTNNNAANNCCNNNNNGGTANNNNNTNNNNNNNNANTTNAAGGTANNN
NNNNNTTTNNAATNTANNNNNAANTTNNANNNAANNNNGGTNTTCNNCNNANNANNNNNN
TNTNATTTNNNNTGGTAANNATTANAANATGGTNGGNNTNTNTNTNATTNCAANATCCAA
AAAGAATNNNCTNTCCANTTGGTCNTNAGATTAAGAGGTGGTATGCAAATNTTTGTCAAA
ACATTAANTGGTAGGACCATCACTNTTNAAGTTGAGGGCTCAGATAATATTGAAAATGTT
AAANCAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGATTAATTTTCGCT
GGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACT
CTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGT
AAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATC
CAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTG
GAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTT
CTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACA
CTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAAGAA
GGTATCCCACCAGATCAACAACGTCTC
sequence update 2009. 4. 3
Translated Amino Acid sequence 
---xxxpxxxxxxxxxkvxxxxxxxxxxxxxxvfxxxxxxxxxw*XLXXGXXXXXXXIQK
EXXXXLVXRLRGGMQXFVKTLXGRTITXXVEGSDNIENVKXKIQDKEGIPPDQQRLIFAG
KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKAKIQ
DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL
EVEGSDNIENVKTKIQDKEGIPPDQQRL
Translated Amino Acid sequence (All Frames) 
Frame A:
---fxxxxxvxxxxxxxgxxxfxxxxxxxxxxgxxxxxxxxfxxvxixxwxxxxxxqxpk
rxxxpxgxxikrwyanxcqnixw*dhhxxs*glr*y*kc*xkdsrqrryptrptkinfrw
*tirrwsysl*lqhskgihspfspqikrwyanfcqnphw*dyytrs*rf**h*ec*sqnp
rqrrystrsttshfrr*tiggwsysl*lqhskgihspfssqikrwyanfcknshw*nhyt
rs*r**qh*ecknknsrqrryptrstts


Frame B:
---xxxpxxxxxxxxxkvxxxxxxxxxxxxxxvfxxxxxxxxxw*XLXXGXXXXXXXIQK
EXXXXLVXRLRGGMQXFVKTLXGRTITXXVEGSDNIENVKXKIQDKEGIPPDQQRLIFAG
KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKAKIQ
DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL
EVEGSDNIENVKTKIQDKEGIPPDQQRL


Frame C:
---xxxxxgxxxxxxxrxxxxxnxxxxxxxxxxsxxxxxxixxgxxxxmvgxxxixxskk
nxlsxwsxd*evvckxlskh*xvgpslxklraqiilkmlxqrfktkkvshqtnkd*fslv
nn*kmvvlslittfkrnplsi*ssd*evvckflskpslvrllhsklkvlitlrmlkpksk
tkkvfhqinnvsfspvnnwrmvvlslittfkrnplsi*fsd*evvckfl*klslvkplhs
klkvvttlrm*kqkfktkkvshqinnv
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFL843 (AFL843Q) /CSM/AF/AFL8-B/AFL843Q.Seq.d/                       1189   0.0
SFH711 (SFH711Q) /CSM/SF/SFH7-A/SFH711Q.Seq.d/                       1179   0.0
SFF769 (SFF769Q) /CSM/SF/SFF7-C/SFF769Q.Seq.d/                       1179   0.0
CFJ655 (CFJ655Q) /CSM/CF/CFJ6-C/CFJ655Q.Seq.d/                       1179   0.0
CFF552 (CFF552Q) /CSM/CF/CFF5-C/CFF552Q.Seq.d/                       1179   0.0
CFE635 (CFE635Q) /CSM/CF/CFE6-B/CFE635Q.Seq.d/                       1179   0.0
CFB891 (CFB891Q) /CSM/CF/CFB8-D/CFB891Q.Seq.d/                       1179   0.0
AFE365 (AFE365Q) /CSM/AF/AFE3-C/AFE365Q.Seq.d/                       1179   0.0
SFC119 (SFC119Q) /CSM/SF/SFC1-A/SFC119Q.Seq.d/                       1176   0.0
VFK823 (VFK823Q) /CSM/VF/VFK8-A/VFK823Q.Seq.d/                       1174   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ346558) Dictyostelium discoideum cDNA clone:dda24f12, 3' ...  1187   0.0    1
(BJ402270) Dictyostelium discoideum cDNA clone:dds16f03, 3' ...  1179   0.0    1
(BJ398486) Dictyostelium discoideum cDNA clone:dds12j17, 3' ...  1179   0.0    1
(BJ375962) Dictyostelium discoideum cDNA clone:ddc20m14, 3' ...  1179   0.0    1
(BJ373746) Dictyostelium discoideum cDNA clone:ddc4f24, 3' e...  1179   0.0    1
(BJ373224) Dictyostelium discoideum cDNA clone:ddc2b12, 3' e...  1179   0.0    1
(BJ372491) Dictyostelium discoideum cDNA clone:ddc12g22, 3' ...  1179   0.0    1
(BJ372425) Dictyostelium discoideum cDNA clone:ddc12g13, 3' ...  1179   0.0    1
(BJ371914) Dictyostelium discoideum cDNA clone:ddc10e10, 3' ...  1179   0.0    1
(BJ342096) Dictyostelium discoideum cDNA clone:dda9b17, 3' e...  1179   0.0    1
dna update 2009. 4. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict...   388   e-106
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge...   388   e-106
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty...   388   e-106
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ...   386   e-106
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu...   373   e-102
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq...   372   e-102
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu...   372   e-102
S32020(S32020) polyubiquitin 6 - Geodia cydonium  &X70917_1(X709...   372   e-102
T16144(T16144) ubiquitin - Caenorhabditis elegans  &U23172_1(U23...   372   e-102
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar...   370   e-101
protein update 2009. 4. 4
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFL843 is

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFL843Z
3' end seq. 
>AFL843Z.Seq
XXXXXXXXXXTTTTNNNAANNCCNNNNNGGTANNNNNTNNNNNNNNANTTNAAGGTANNN
NNNNNTTTNNAATNTANNNNNAANTTNNANNNAANNNNGGTNTTCNNCNNANNANNNNNN
TNTNATTTNNNNTGGTAANNATTANAANATGGTNGGNNTNTNTNTNATTNCAANATCCAA
AAAGAATNNNCTNTCCANTTGGTCNTNAGATTAAGAGGTGGTATGCAAATNTTTGTCAAA
ACATTAANTGGTAGGACCATCACTNTTNAAGTTGAGGGCTCAGATAATATTGAAAATGTT
AAANCAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGATTAATTTTCGCT
GGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACT
CTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGT
AAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATC
CAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTG
GAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTT
CTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACA
CTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAAGAA
GGTATCCCACCAGATCAACAACGTCTC
Length of 3' end seq. 807
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -