>SSM595 (SSM595Q) /CSM/SS/SSM5-D/SSM595Q.Seq.d/
XXXXXXXXXXTTAACAGAGAGGGATAATTTATTGTTACAACTTCAATGGGATGAAGATGA
TAAAGAATTGGATGCCGATGCACAAAAGAAAAAGAGATCAAAAGAACGTGTTGCCAATGA
AGAACGTCAACAAATCACTCGTTTAAGATCACAAATGAAAATTATGGAAACTGCATTAGA
AGAAAGGGATACAAACATTCATAAACTTCATAAAGAATTGAGTGATTCAAAAATTCAATA
CCAAGTGACCGTTGATTCTCTTGCTCAAGGTAGAGATGCCCCAGTTAGAAGTAAAACAAG
TTGGGGTTTTAAATCATCACCATCCTCTTCACCAATGGTTTATAAACCTTCTTATTCCGC
AAGTCCAATTCAAAGTGAAAAACAATATTCAGTTGCTCCTTCTCCTGCCAATTCTCCTGC
AATGAGTTCTCCAAATTTCGCTTCCTCTTCTTCAACTTCTTCTGGTTCACCTTCAATGAT
GGAATTTGATTATAATAATCATCCAAAGAAATTAAACAAAAAAGGTAGTATCTTTAATTT
CAGAAAATCAAAGAAATCACCAATTATTCAAGATACAAATTGGGCAACTCAATCTGCACA
TTAAA

---TERDNLLLQLQWDEDDKELDADAQKKKRSKERVANEERQQITRLRSQMKIMETALEE
RDTNIHKLHKELSDSKIQYQVTVDSLAQGRDAPVRSKTSWGFKSSPSSSPMVYKPSYSAS
PIQSEKQYSVAPSPANSPAMSSPNFASSSSTSSGSPSMMEFDYNNHPKKLNKKGSIFNFR
KSKKSPIIQDTNWATQSAH*

Frame A:
---*qrgiiycynfngmkmiknwmpmhkrkrdqknvlpmknvnkslv*dhk*klwklh*k
kgiqtfinfikn*viqkfntk*plilllkvempqlevkqvgvlnhhhplhqwfinllipq
vqfkvknniqlllllpillq*vlqislpllqlllvhlq*wnliiiiiqrn*tkkvvslis
enqrnhqlfkiqigqlnlhik


Frame B:
---nreg*fivttsmg*r**rigcrctkekeikrtccq*rtstnhsfkitnenygncirr
kgykhs*ts*rie*fknsipsdr*fscsr*rcps*k*nklgf*iitilftngl*tflfrk
snsk*ktifscsfscqfscnefskfrflffnffwftfndgi*l**sskeikqkr*yl*fq
kikeitnysryklgnsictl


Frame C:
---TERDNLLLQLQWDEDDKELDADAQKKKRSKERVANEERQQITRLRSQMKIMETALEE
RDTNIHKLHKELSDSKIQYQVTVDSLAQGRDAPVRSKTSWGFKSSPSSSPMVYKPSYSAS
PIQSEKQYSVAPSPANSPAMSSPNFASSSSTSSGSPSMMEFDYNNHPKKLNKKGSIFNFR
KSKKSPIIQDTNWATQSAH*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM595 (SSM595Q) /CSM/SS/SSM5-D/SSM595Q.Seq.d/                       1179   0.0
SSK393 (SSK393Q) /CSM/SS/SSK3-D/SSK393Q.Seq.d/                       1179   0.0
SSE853 (SSE853Q) /CSM/SS/SSE8-C/SSE853Q.Seq.d/                       1172   0.0
SSH605 (SSH605Q) /CSM/SS/SSH6-A/SSH605Q.Seq.d/                       1170   0.0
SSK411 (SSK411Q) /CSM/SS/SSK4-A/SSK411Q.Seq.d/                       1164   0.0
SSH146 (SSH146Q) /CSM/SS/SSH1-B/SSH146Q.Seq.d/                       1160   0.0
SSH366 (SSH366Q) /CSM/SS/SSH3-C/SSH366Q.Seq.d/                       1158   0.0
SSE730 (SSE730Q) /CSM/SS/SSE7-B/SSE730Q.Seq.d/                       1154   0.0
AFI132 (AFI132Q) /CSM/AF/AFI1-B/AFI132Q.Seq.d/                       1154   0.0
AHI409 (AHI409Q) /CSM/AH/AHI4-A/AHI409Q.Seq.d/                       1126   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

D50338|D50338.1 Dictyostelium discoideum DNA for ribosomal protein, complete cds.   870  0.0  2
AC023628|AC023628.3 Arabidopsis thaliana chromosome I BAC F6F3 genomic sequence, complete sequence.    38  0.11  3
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    32  0.16  11
AC136181|AC136181.2 Rattus norvegicus clone CH230-440A7, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    46  0.27  3
BW246889|BW246889.1 Ciona intestinalis cDNA, clone:citb072c20, 5' end, single read.    46  0.50  1
BW227799|BW227799.1 Ciona intestinalis cDNA, clone:cilv075f12, 5' end, single read.    46  0.50  1
BW261722|BW261722.1 Ciona intestinalis cDNA, clone:cign029e17, 5' end, single read.    46  0.50  1
BW226824|BW226824.1 Ciona intestinalis cDNA, clone:cilv070a01, 5' end, single read.    46  0.50  1
BD248376|BD248376.1 Gene participating in tolerance against environmental stress.    46  0.50  1
BW230587|BW230587.1 Ciona intestinalis cDNA, clone:cilv086k05, 5' end, single read.    46  0.50  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX322540_6(BX322540|pid:none) Zebrafish DNA sequence from clone ...    39   0.086
CR940347_430(CR940347|pid:none) Theileria annulata strain Ankara...    39   0.11
(Q9JKS6) RecName: Full=Protein piccolo; AltName: Full=Aczonin; A...    38   0.19
AB083478_1(AB083478|pid:none) Mus musculus Pclo mRNA for Piccolo...    38   0.19
AM910991_49(AM910991|pid:none) Plasmodium knowlesi strain H chro...    38   0.19
(Q9QYX7) RecName: Full=Protein piccolo; AltName: Full=Aczonin; A...    38   0.19
Y19186_1(Y19186|pid:none) Mus musculus mRNA for aczonin, short s...    38   0.19
AM474314_2(AM474314|pid:none) Vitis vinifera contig VV78X056190....    38   0.19
AF138789_1(AF138789|pid:none) Rattus norvegicus multidomain pres...    38   0.19
EF085866_1(EF085866|pid:none) Picea sitchensis clone WS02812_M22...    38   0.25

 psg: 0.75  gvh: 0.12  alm: 0.61  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for SSM595 is nuc

>SSM595Z.Seq
----------TTAACAGAGAGGGATAATTTATTGTTACAACTTCAATGGGATGAAGATGA
TAAAGAATTGGATGCCGATGCACAAAAGAAAAAGAGATCAAAAGAACGTGTTGCCAATGA
AGAACGTCAACAAATCACTCGTTTAAGATCACAAATGAAAATTATGGAAACTGCATTAGA
AGAAAGGGATACAAACATTCATAAACTTCATAAAGAATTGAGTGATTCAAAAATTCAATA
CCAAGTGACCGTTGATTCTCTTGCTCAAGGTAGAGATGCCCCAGTTAGAAGTAAAACAAG
TTGGGGTTTTAAATCATCACCATCCTCTTCACCAATGGTTTATAAACCTTCTTATTCCGC
AAGTCCAATTCAAAGTGAAAAACAATATTCAGTTGCTCCTTCTCCTGCCAATTCTCCTGC
AATGAGTTCTCCAAATTTCGCTTCCTCTTCTTCAACTTCTTCTGGTTCACCTTCAATGAT
GGAATTTGATTATAATAATCATCCAAAGAAATTAAACAAAAAAGGTAGTATCTTTAATTT
CAGAAAATCAAAGAAATCACCAATTATTCAAGATACAAATTGGGCAACTCAATCTGCACA
TTAAA