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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSM569
Library SS
(Link to library)
Clone ID SSM569
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U04312-1
Original site URL
Representative seq. ID SSM569E
(Link to Original site)
Representative DNA sequence 
>SSM569 (SSM569Q) /CSM/SS/SSM5-C/SSM569Q.Seq.d/
GTAAAAATAAATAAACAAACAAATAAAATTTTATAAATTTCACAATTCTAGTTCATAAAC
ATTCACCACAACATAATATAAAATAAAATAAAATAAAAAAGATAAAAAATAAAAAATAAT
AAAAAAATGACAAAAACAGAAACTAAAGTAGAACCAAAAGCAGAGGTCAAACCAAAAGAA
GATAATGTAGAAGTTATTGAAGATGATGAATTTGAAGAGTTTGAAGATAATATGGCCGAA
GGCGAAGATAACTCAAAAGAACAATGGGAAGATGATTGGGATACTGATAAAATTGATGAC
GATTTTTCAAAACAATTAAGAGCTGAAATTGAATCCCACTCAACCATGAAATCATAAATA
GAAATAATAATAAAAAAAAATATAGGAATAAAAAAAAAAAAAA
sequence update 1998. 3. 8
Translated Amino Acid sequence 
vkinkqtnkil*isqf*finihhnii*nkik*kr*KIKNNKKMTKTETKVEPKAEVKPKE
DNVEVIEDDEFEEFEDNMAEGEDNSKEQWEDDWDTDKIDDDFSKQLRAEIESHSTMKS*i
eiiikknigikkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
vkinkqtnkil*isqf*finihhnii*nkik*kr*KIKNNKKMTKTETKVEPKAEVKPKE
DNVEVIEDDEFEEFEDNMAEGEDNSKEQWEDDWDTDKIDDDFSKQLRAEIESHSTMKS*i
eiiikknigikkkk


Frame B:
*k*inkqikfykfhnsss*tfttt*ykik*nkkdkk*kiikk*qkqklk*nqkqrsnqkk
im*kllkmmnlkslkiiwpkakitqknngkmigiliklmtifqnn*elklnptqp*nhk*
k***kki*e*kkkk


Frame C:
knk*tnk*nfinftilvhkhspqhnik*nkikkiknkk**kndknrn*srtksrgqtkrr
*crsy*r**i*rv*r*ygrrrr*lkrtmgr*lgy**n**rffktiks*n*iplnheiinr
nnnkkkyrnkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM569 (SSM569Q) /CSM/SS/SSM5-C/SSM569Q.Seq.d/                        466   e-130
SSA127 (SSA127Q) /CSM/SS/SSA1-B/SSA127Q.Seq.d/                        444   e-124
VHH643 (VHH643Q) /CSM/VH/VHH6-B/VHH643Q.Seq.d/                         44   0.002
SSG406 (SSG406Q) /CSM/SS/SSG4-A/SSG406Q.Seq.d/                         44   0.002
SSE158 (SSE158Q) /CSM/SS/SSE1-C/SSE158Q.Seq.d/                         44   0.002
SLC138 (SLC138Q) /CSM/SL/SLC1-B/SLC138Q.Seq.d/                         44   0.002
SHK602 (SHK602Q) /CSM/SH/SHK6-A/SHK602Q.Seq.d/                         44   0.002
SHH221 (SHH221Q) /CSM/SH/SHH2-A/SHH221Q.Seq.d/                         44   0.002
SHF627 (SHF627Q) /CSM/SH/SHF6-B/SHF627Q.Seq.d/                         44   0.002
CHG753 (CHG753Q) /CSM/CH/CHG7-C/CHG753Q.Seq.d/                         44   0.002
own update 2002.12.14
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

CA910640|CA910640.1 PCSC10898 Scarlet Runner Bean Suspensor Region TriplEx2 Phaseolus coccineus cDNA 5' similar to Split hand/Split foot 1, mRNA sequence.    48  6e-07  2
CA910641|CA910641.1 PCSC17517 Scarlet Runner Bean Suspensor Region TriplEx2 Phaseolus coccineus cDNA 5' similar to Split hand/Split foot 1, mRNA sequence.    44  9e-06  2
BM885320|BM885320.1 sal98c02.y1 Gm-c1063 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1063-3963 5' similar to TR:Q9XIR8 Q9XIR8 F13O11.6 PROTEIN. ;, mRNA sequence.    40  3e-04  3
BE023342|BE023342.1 sm70f09.y1 Gm-c1028 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1028-9282 5' similar to TR:Q13437 Q13437 DELETED IN SPLIT HAND/SPLIT FOOT 1 ;, mRNA sequence.    40  3e-04  3
CA800884|CA800884.1 sat26b02.y1 Gm-c1056 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1056-2379 5' similar to TR:Q9XIR8 Q9XIR8 F13O11.6 PROTEIN. ;, mRNA sequence.    40  3e-04  3
BI468772|BI468772.1 sai03c10.y1 Gm-c1050 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1050-4363 5' similar to TR:Q9XIR8 Q9XIR8 F13O11.6 PROTEIN. ;, mRNA sequence.    40  3e-04  3
AW101496|AW101496.1 sd79a07.y1 Gm-c1009 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1009-589 5' similar to TR:Q13437 Q13437 DELETED IN SPLIT HAND/SPLIT FOOT 1 ;, mRNA sequence.    40  3e-04  3
AV860852|AV860852.1 Ciona intestinalis cDNA, clone:rcicl21n07, 3' end, single read.    48  4e-04  2
BG838184|BG838184.1 Gc01_06e02_R Gc01_AAFC_ECORC_cold_stressed_Glycine_clandestina Glycine clandestina cDNA clone Gc01_06e02, mRNA sequence.    40  4e-04  3
CA851031|CA851031.1 D09D05_G05_07.ab1 cDNA Peking library 2, 4 day SCN3 Glycine max cDNA clone D09D05 5', mRNA sequence.    40  4e-04  3
dna update 2003. 8.15
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 230,461,602
protein update 2009. 7. 9
PSORT 

 psg: 0.45  gvh: 0.01  alm: 0.72  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 24.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for SSM569 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSM569E
Full length Seq. 
>SSM569E.Seq
GTAAAAATAAATAAACAAACAAATAAAATTTTATAAATTTCACAATTCTAGTTCATAAAC
ATTCACCACAACATAATATAAAATAAAATAAAATAAAAAAGATAAAAAATAAAAAATAAT
AAAAAAATGACAAAAACAGAAACTAAAGTAGAACCAAAAGCAGAGGTCAAACCAAAAGAA
GATAATGTAGAAGTTATTGAAGATGATGAATTTGAAGAGTTTGAAGATAATATGGCCGAA
GGCGAAGATAACTCAAAAGAACAATGGGAAGATGATTGGGATACTGATAAAATTGATGAC
GATTTTTCAAAACAATTAAGAGCTGAAATTGAATCCCACTCAACCATGAAATCATAAATA
GAAATAATAATAAAAAAAAATATAGGAATAAAAAAAAAAAAAA
Length of full length seq. 403