>SSM537 (SSM537Q) /CSM/SS/SSM5-B/SSM537Q.Seq.d/
CAACAACAAAATGTCAGATAACGAAGCTTTAGATGTCGAAGACTACGCCCAAGCCGGTTC
AGGTGCTTCATTAACCTTCCCAATTCAATGTTCAGCATTAAGAAAGAACGGTTTCGTCGT
CATTAAAGGTTTCCCATGTAAGATTGTTGATATGTCAACTTCCAAAACCGGTAAACACGG
TCACGCCAAAGTTAACATCACTGCTATCGATATCTTCACTGGTAAGAAATACGAAGAAAT
TTGCCCATCAACTCACAACATTGATGTACCAAATGTCAGCAGAAAGGAATACACCGTTAT
GGATGTTCAAGATGGTTATTTATCACTCTTGGATNNTGGTGGTGAAGTCAAAGAAGATCT
TGCCCTCCCAGAAGATGATATTGGTAAAGAAATTACCCANATGTTAAAAGAAGGTAAAGA
GCCATTAGTTTCAGTCANCTCTGCTTTAGGTAAAGAAGGTGTCGTCTCTGTTAAAGTCAG
CAAXXXXXXXXXX

NNKMSDNEALDVEDYAQAGSGASLTFPIQCSALRKNGFVVIKGFPCKIVDMSTSKTGKHG
HAKVNITAIDIFTGKKYEEICPSTHNIDVPNVSRKEYTVMDVQDGYLSLLDXGGEVKEDL
ALPEDDIGKEITXMLKEGKEPLVSVXSALGKEGVVSVKVS---

Frame A:
qqqnvr*rsfrcrrlrpsrfrcfinlpnsmfsikkerfrrh*rfpm*dc*yvnfqnr*tr
srqs*hhcyrylhw*eirrnlpinsqh*ctkcqqkgihrygcsrwlfitlgxww*sqrrs
cpprr*yw*rnypxvkrr*raisfsxlcfr*rrcrlc*sq---


Frame B:
NNKMSDNEALDVEDYAQAGSGASLTFPIQCSALRKNGFVVIKGFPCKIVDMSTSKTGKHG
HAKVNITAIDIFTGKKYEEICPSTHNIDVPNVSRKEYTVMDVQDGYLSLLDXGGEVKEDL
ALPEDDIGKEITXMLKEGKEPLVSVXSALGKEGVVSVKVS---


Frame C:
ttkcqitkl*mskttpkpvqvlh*psqfnvqh*ertvssslkvshvrllicqlpkpvntv
tpkltsllsisslvrntkkfahqlttlmyqmsaerntplwmfkmviyhswxxvvkskkil
psqkmilvkklpxc*kkvksh*fqsxll*vkkvssllksa---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM537 (SSM537Q) /CSM/SS/SSM5-B/SSM537Q.Seq.d/                        934   0.0
VSG552 (VSG552Q) /CSM/VS/VSG5-C/VSG552Q.Seq.d/                        926   0.0
VSE527 (VSE527Q) /CSM/VS/VSE5-B/VSE527Q.Seq.d/                        926   0.0
VSD284 (VSD284Q) /CSM/VS/VSD2-D/VSD284Q.Seq.d/                        926   0.0
VHN820 (VHN820Q) /CSM/VH/VHN8-A/VHN820Q.Seq.d/                        926   0.0
VHD324 (VHD324Q) /CSM/VH/VHD3-A/VHD324Q.Seq.d/                        926   0.0
SSL858 (SSL858Q) /CSM/SS/SSL8-C/SSL858Q.Seq.d/                        926   0.0
SSC438 (SSC438Q) /CSM/SS/SSC4-B/SSC438Q.Seq.d/                        926   0.0
SLF384 (SLF384Q) /CSM/SL/SLF3-D/SLF384Q.Seq.d/                        926   0.0
SLE525 (SLE525Q) /CSM/SL/SLE5-B/SLE525Q.Seq.d/                        926   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X14970|X14970.1 Dictyostelium discoideum mRNA for translation initiation factor  eIF-4D.   922  0.0  1
AX001144|AX001144.1 Sequence 5 from Patent WO9901551.            922  0.0  1
AR228401|AR228401.1 Sequence 5 from patent US 6448040.           922  0.0  1
AL424567|AL424567.1 T3 end of clone XAZ0AA001B09 of library XAZ0AA from strain CBS 712  of Kluyveromyces marxianus.   129  4e-26  1
J05455|J05455.1 S.cerevisiae ANB1 locus encoding protein synthesis initiation factor (eIF-4D) gene, complete cds.   103  6e-23  2
Z49547|Z49547.1 S.cerevisiae chromosome X reading frame ORF YJR047c.   103  7e-23  2
X56235|X56235.1 Yeast (S.cerevisiae) HYP1 gene for hypusine containing protein HP1.   103  7e-23  2
U07366|U07366.1 Candida albicans translation initiation factor eIF-5A (TIF51) gene, complete cds.    78  3e-22  3
AQ874776|AQ874776.1 V114E5 mTn-3xHA/lacZ Insertion Library, strain Y2278 Saccharomyces cerevisiae genomic 5', genomic survey sequence.    54  7e-22  5
M63542|M63542.1 S.cerevisiae initiation factor 5A (TIF51B) gene, complete cds.    96  5e-21  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P10160) RecName: Full=Eukaryotic translation initiation factor ...   196   2e-49
AL596185_11(AL596185|pid:none) Mouse DNA sequence from clone RP2...   195   6e-49
(P63241) RecName: Full=Eukaryotic translation initiation factor ...   195   6e-49
AY129319_1(AY129319|pid:none) Homo sapiens eukaryotic initiation...   195   6e-49
BC070048_1(BC070048|pid:none) Homo sapiens eukaryotic translatio...   193   2e-48
(Q6IS14) RecName: Full=Eukaryotic translation initiation factor ...   193   2e-48
S72024_1(S72024|pid:none) eif-5A=eukaryotic initiation factor 5A...   193   2e-48
BT075853_1(BT075853|pid:none) Caligus rogercresseyi clone crog-e...   192   3e-48
BT082977_1(BT082977|pid:none) Anoplopoma fimbria clone afim-evh-...   192   4e-48
(Q07460) RecName: Full=Eukaryotic translation initiation factor ...   192   5e-48

 psg: 0.75  gvh: 0.61  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSM537 is cyt

>SSM537F.Seq
CAACAACAAAATGTCAGATAACGAAGCTTTAGATGTCGAAGACTACGCCCAAGCCGGTTC
AGGTGCTTCATTAACCTTCCCAATTCAATGTTCAGCATTAAGAAAGAACGGTTTCGTCGT
CATTAAAGGTTTCCCATGTAAGATTGTTGATATGTCAACTTCCAAAACCGGTAAACACGG
TCACGCCAAAGTTAACATCACTGCTATCGATATCTTCACTGGTAAGAAATACGAAGAAAT
TTGCCCATCAACTCACAACATTGATGTACCAAATGTCAGCAGAAAGGAATACACCGTTAT
GGATGTTCAAGATGGTTATTTATCACTCTTGGATNNTGGTGGTGAAGTCAAAGAAGATCT
TGCCCTCCCAGAAGATGATATTGGTAAAGAAATTACCCANATGTTAAAAGAAGGTAAAGA
GCCATTAGTTTCAGTCANCTCTGCTTTAGGTAAAGAAGGTGTCGTCTCTGTTAAAGTCAG
CAA----------