SSM529
Library SS
(Link to library)
Clone ID SSM529
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16048-1
Original site URL
Representative seq. ID SSM529Z
(Link to Original site)
Representative DNA sequence
>SSM529 (SSM529Q) /CSM/SS/SSM5-B/SSM529Q.Seq.d/
XXXXXXXXXXAAGAAATTGAAGCAGGCGATGAAAACGATTTACAAAATGCTTTACTTTTA
AATCCAGTCTCAGTTGCTATTGATGCTTCTCATAATAGTTTCCAACTTTACACTGCCGGT
GTTTACTATGAACCAGCTTGTTCTTCTGAAGATTTAGATCATGGTGTACTTGCTGTTGGT
ATGGGTACTGATAATGGTGAAGATTATTACATTGTTAAAAATAGTTGGGGACCATCATGG
GGTTTAAATGGTTATATTCATATGGCAAGAAATAAAGATAACAATTGTGGAATCTCAACA
ATGGCTTCATATCCTATTGCTTAACCATTTTTATATGTATATATATATATATATATAAAT
ACTCTTCAAACCTGTATAAATTTGTATATTCTTTATCTTTTTTTTTCTTTTTTTTTTTCT
GTTTATTCTTTTTTAAAAAAAAAAAAAA
sequence update 1998. 3.11
Translated Amino Acid sequence
---EIEAGDENDLQNALLLNPVSVAIDASHNSFQLYTAGVYYEPACSSEDLDHGVLAVGM
GTDNGEDYYIVKNSWGPSWGLNGYIHMARNKDNNCGISTMASYPIA*pflyvyiyiyint
lqtcinlyilylffsfffsvysflkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---rn*srr*krftkcftfksslscy*cfs**fptlhcrcll*tslff*rfrswctccwy
gy**w*rllhc*k*lgtimgfkwlysygkk*r*qlwnlnngfisycltificiyiyiyky
ssnlykfvyslsfffffffclfffkkkk


Frame B:
---EIEAGDENDLQNALLLNPVSVAIDASHNSFQLYTAGVYYEPACSSEDLDHGVLAVGM
GTDNGEDYYIVKNSWGPSWGLNGYIHMARNKDNNCGISTMASYPIA*pflyvyiyiyint
lqtcinlyilylffsfffsvysflkkkk


Frame C:
---klkqamktiykmlyf*iqsqlllmlliivsnftlpvftmnqlvllki*imvylllvw
vlimvkiitllkivgdhhgv*mvifiwqeikitivesqqwlhilllnhfymyiyiyi*il
fkpv*iciffiffflffflfilf*kkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSM529 (SSM529Q) /CSM/SS/SSM5-B/SSM529Q.Seq.d/ 636 0.0
SSM180 (SSM180Q) /CSM/SS/SSM1-D/SSM180Q.Seq.d/ 636 0.0
SSK382 (SSK382Q) /CSM/SS/SSK3-D/SSK382Q.Seq.d/ 636 0.0
SSH103 (SSH103Q) /CSM/SS/SSH1-A/SSH103Q.Seq.d/ 636 0.0
SSG640 (SSG640Q) /CSM/SS/SSG6-B/SSG640Q.Seq.d/ 636 0.0
SSG195 (SSG195Q) /CSM/SS/SSG1-D/SSG195Q.Seq.d/ 636 0.0
SSE785 (SSE785Q) /CSM/SS/SSE7-D/SSE785Q.Seq.d/ 636 0.0
SSE302 (SSE302Q) /CSM/SS/SSE3-A/SSE302Q.Seq.d/ 636 0.0
SSA169 (SSA169Q) /CSM/SS/SSA1-C/SSA169Q.Seq.d/ 636 0.0
SLD386 (SLD386Q) /CSM/SL/SLD3-D/SLD386Q.Seq.d/ 628 e-179

own update 2001.11.12
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

L36204|L36204.1 Dictyostelium discoideum cysteine proteinase (CP4) mRNA, complete cds. 46 1e-07 3
M16039|M16039.1 Dictyostelium discoideum pst-cath gene encoding pst-cathepsin, complete cds. 58 1e-04 1
X03344|X03344.1 Dictyostelium discoideum mRNA for cysteine proteinase 2. 58 1e-04 1
AI067610|AI067610.1 EST209292 Schistosoma mansoni, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMNCC16 5' end similar to cathepsin L, mRNA sequence. 34 2e-04 3
AI975022|AI975022.1 EST269616 Schistosoma mansoni female, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMFAA90 5' end similar to cathepsin L, mRNA sequence. 34 4e-04 3
AJ496197|AJ496197.1 Myzus persicae mRNA for putative cathepsin L (catL gene). 42 6e-04 3
AI975620|AI975620.1 EST270214 Schistosoma mansoni female, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMFAV16 5' end, mRNA sequence. 34 6e-04 3
AI977044|AI977044.1 EST271638 Schistosoma mansoni male, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMMAE72 5' end, mRNA sequence. 34 6e-04 3
AI977557|AI977557.1 EST272151 Schistosoma mansoni male, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMMAN82 5' end, mRNA sequence. 34 6e-04 3
AI977348|AI977348.1 EST271942 Schistosoma mansoni male, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMMAI24 5' end, mRNA sequence. 34 6e-04 3
dna update 2003. 8.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EF053509_1(EF053509|pid:none) Acanthamoeba castellanii cysteine ... 159 2e-38
EF488012_1(EF488012|pid:none) Dermestes frischii digestive cyste... 152 4e-36
AY332271_1(AY332271|pid:none) Tenebrio molitor cathepsin-L-like ... 149 4e-35
AY207373_1(AY207373|pid:none) Tenebrio molitor cathepsin L-like ... 147 1e-34
D82884_1(D82884|pid:none) Sitophilus zeamais mRNA for cysteine p... 147 1e-34
BC075887_1(BC075887|pid:none) Danio rerio cathepsin L.1, mRNA (c... 146 3e-34
(P54640) RecName: Full=Cysteine proteinase 5; EC=3.4.22... 145 6e-34
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot... 145 6e-34
EF066525_1(EF066525|pid:none) Radix peregra cathepsin-L-like cys... 145 6e-34
AY336798_1(AY336798|pid:none) Rhipicephalus haemaphysaloides hae... 144 7e-34
protein update 2009. 6.15
PSORT

psg: 0.75 gvh: 0.57 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.07 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
24.0 %: nuclear
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: Golgi

>> prediction for SSM529 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSM529Z
3' end seq.
>SSM529Z.Seq
----------AAGAAATTGAAGCAGGCGATGAAAACGATTTACAAAATGCTTTACTTTTA
AATCCAGTCTCAGTTGCTATTGATGCTTCTCATAATAGTTTCCAACTTTACACTGCCGGT
GTTTACTATGAACCAGCTTGTTCTTCTGAAGATTTAGATCATGGTGTACTTGCTGTTGGT
ATGGGTACTGATAATGGTGAAGATTATTACATTGTTAAAAATAGTTGGGGACCATCATGG
GGTTTAAATGGTTATATTCATATGGCAAGAAATAAAGATAACAATTGTGGAATCTCAACA
ATGGCTTCATATCCTATTGCTTAACCATTTTTATATGTATATATATATATATATATAAAT
ACTCTTCAAACCTGTATAAATTTGTATATTCTTTATCTTTTTTTTTCTTTTTTTTTTTCT
GTTTATTCTTTTTTAAAAAAAAAAAAAA
Length of 3' end seq. 438
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -