>SSM514 (SSM514Q) /CSM/SS/SSM5-A/SSM514Q.Seq.d/
XXXXXXXXXXCTGTTAAGCTAATGCTAAGGTGTCTCTCTCCCCCTTTGCTTTGCATTACT
CTCCTCAAGCTCAGATAATCTCGAGCTCCACTAACGATGCTCCTCAAGTATCCTCAGGGT
TAATCCATCACATTCCTATGCAACTCTCTCAAATGTATAAGCAGTCTTTAACAAAAAAAA
ATATTTAAAAAAAAAAAAAAAAGAAAAAAAAAAAATATTAAAATATTTTTTTTAAAATCA
ATTTTAAATATAAATAATAATGTTTTTTTTTTTTTTATAAAAAAAAGAAAGAAAAAAAGA
AAAAAAAAAAAAAAAAGAAAAAAAGAATTTAAAAAAAAAAAA

---vklmlrclsppllcitllklr*srapltmllkypqg*sitflcnslkcissl*QKKI
FKKKKKRKKKNIKIFFLKSILNINNNVFFFFIKKRKKKRKKKKKRKKEFKKKK

Frame A:
---c*anakvslspfalhyspqaqiissstndapqvssglihhipmqlsqmykqsltkkn
i*kkkkkkkkky*niffkinfkyk**cffffykkkkekkkkkkkkkkri*kkk


Frame B:
---vklmlrclsppllcitllklr*srapltmllkypqg*sitflcnslkcissl*QKKI
FKKKKKRKKKNIKIFFLKSILNINNNVFFFFIKKRKKKRKKKKKRKKEFKKKK


Frame C:
---ls*c*gvslplcfallssssdnlelh*rcsssilrvnpshsyatlsnv*avfnkkky
lkkkkkekkkilkyff*nqf*i*iimffffl*kkerkkekkkkkekknlkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA585 (VSA585Q) /CSM/VS/VSA5-D/VSA585Q.Seq.d/                        321   4e-87
SSM728 (SSM728Q) /CSM/SS/SSM7-B/SSM728Q.Seq.d/                        321   4e-87
SSM719 (SSM719Q) /CSM/SS/SSM7-A/SSM719Q.Seq.d/                        321   4e-87
SSM576 (SSM576Q) /CSM/SS/SSM5-D/SSM576Q.Seq.d/                        321   4e-87
SSM514 (SSM514Q) /CSM/SS/SSM5-A/SSM514Q.Seq.d/                        321   4e-87
SSM276 (SSM276Q) /CSM/SS/SSM2-D/SSM276Q.Seq.d/                        321   4e-87
SSM269 (SSM269Q) /CSM/SS/SSM2-C/SSM269Q.Seq.d/                        321   4e-87
SSM229 (SSM229Q) /CSM/SS/SSM2-B/SSM229Q.Seq.d/                        321   4e-87
SSM165 (SSM165Q) /CSM/SS/SSM1-C/SSM165Q.Seq.d/                        321   4e-87
SSL845 (SSL845Q) /CSM/SS/SSL8-B/SSL845Q.Seq.d/                        321   4e-87

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

D16417|D16417.1 Dictyostelium discoideum mRNA.                   321  e-104  2
CC245494|CC245494.1 CH261-54C11_Sp6.1 CH261 Gallus gallus genomic clone CH261-54C11, DNA sequence.    56  3e-04  1
BM094544|BM094544.1 saj17c12.y1 Gm-c1066 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1066-2832 5', mRNA sequence.    52  0.004  1
BZ463651|BZ463651.1 BONRK12TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONRK12, DNA sequence.    50  0.018  1
AC120895|AC120895.4 Rattus norvegicus clone CH230-180J3, WORKING DRAFT SEQUENCE, 5 unordered pieces.    50  0.018  1
AB030651|AB030651.1 Felis catus mRNA for B-lymphocyte activation antigen B7-1 (CD80), complete cds.    38  0.035  2
AX348899|AX348899.1 Sequence 357 from Patent WO0202807.           34  0.035  3
AX344490|AX344490.1 Sequence 337 from Patent WO0200926.           34  0.035  3
BH564896|BH564896.1 BOHIQ68TR BOHI Brassica oleracea genomic clone BOHIQ68, DNA sequence.    48  0.070  1
L43882|L43882.1 Ixodes scapularis (isolate 2, strain Georgia 2) mitochondrial 12S ribosomal RNA (12S rDNA) gene fragment.    48  0.070  1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 219,074,867

 psg: 0.44  gvh: 0.22  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.52  mip: 0.00
 nuc: 1.59  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for SSM514 is nuc

>SSM514Z.Seq
----------CTGTTAAGCTAATGCTAAGGTGTCTCTCTCCCCCTTTGCTTTGCATTACT
CTCCTCAAGCTCAGATAATCTCGAGCTCCACTAACGATGCTCCTCAAGTATCCTCAGGGT
TAATCCATCACATTCCTATGCAACTCTCTCAAATGTATAAGCAGTCTTTAACAAAAAAAA
ATATTTAAAAAAAAAAAAAAAAGAAAAAAAAAAAATATTAAAATATTTTTTTTAAAATCA
ATTTTAAATATAAATAATAATGTTTTTTTTTTTTTTATAAAAAAAAGAAAGAAAAAAAGA
AAAAAAAAAAAAAAAAGAAAAAAAGAATTTAAAAAAAAAAAA