SSM491
Library SS
(Link to library)
Clone ID SSM491
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16580-1
Original site URL
Representative seq. ID SSM491Z
(Link to Original site)
Representative DNA sequence
>SSM491 (SSM491Q) /CSM/SS/SSM4-D/SSM491Q.Seq.d/
XXXXXXXXXXTTTAAAAAAAAAAAAAAAAGAAAAAAAAAAAATATTAAAATATTTTTTTT
AAAATCAATTTTAAATATAAATAATAATGTTTTTTTTTTTTTTATAAAAAAAAGAAAGAA
AAAAAGAAAAAAAAAAAAAAAAGAAAAAAAGAATTTAAAAAAAAAAAAAAAAATAGAAAA
AAAAAAGTTAAAGATGTAATGGTAAAACCAAAGTAGAATGGAAATCCAAAAAAAGATCTT
TATAAATTGCCACTATAATCAATGTATAGATATTGTTCCGTCTGTGTGTATGCTGTTAGG
TCCAGTTTGCTCTTTAGTTACTTTAATTTAAATCTATATTGTAATTTTTATAAAAAAAA
sequence update 1998. 3.11
Translated Amino Acid sequence
---KKKKKRKKKNIKIFFLKSILNINNNVFFFFIKKRKKKRKKKKKEKKNLKKKKKIEKK
KLKM*w*nqsrmeiqkkifinchynqcidivpsvcmllgpvcslvtli*iyivifikk


Translated Amino Acid sequence (All Frames)
Frame A:
---lkkkkkekkkilkyff*nqf*i*iimffffl*kkerkkekkkkkkkri*kkkkk*kk
ks*rcngktkvewkskkrsl*iatiinv*ilfrlcvcc*vqfal*ll*fksil*fl*kk


Frame B:
---*kkkkkkkkky*niffkinfkyk**cffffykkkkekkkkkkkrkkefkkkkknrkk
kvkdvmvkpk*ngnpkkdlyklpl*smyrycsvcvyavrssllfsyfnlnlycnfykk


Frame C:
---KKKKKRKKKNIKIFFLKSILNINNNVFFFFIKKRKKKRKKKKKEKKNLKKKKKIEKK
KLKM*w*nqsrmeiqkkifinchynqcidivpsvcmllgpvcslvtli*iyivifikk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSM852 (SSM852Q) /CSM/SS/SSM8-C/SSM852Q.Seq.d/ 285 2e-76
SSM834 (SSM834Q) /CSM/SS/SSM8-B/SSM834Q.Seq.d/ 285 2e-76
SSM790 (SSM790Q) /CSM/SS/SSM7-D/SSM790Q.Seq.d/ 285 2e-76
SSM712 (SSM712Q) /CSM/SS/SSM7-A/SSM712Q.Seq.d/ 285 2e-76
SSM626 (SSM626Q) /CSM/SS/SSM6-B/SSM626Q.Seq.d/ 285 2e-76
SSM515 (SSM515Q) /CSM/SS/SSM5-A/SSM515Q.Seq.d/ 285 2e-76
SSM501 (SSM501Q) /CSM/SS/SSM5-A/SSM501Q.Seq.d/ 285 2e-76
SSM491 (SSM491Q) /CSM/SS/SSM4-D/SSM491Q.Seq.d/ 285 2e-76
SSM425 (SSM425Q) /CSM/SS/SSM4-B/SSM425Q.Seq.d/ 285 2e-76
SSM383 (SSM383Q) /CSM/SS/SSM3-D/SSM383Q.Seq.d/ 285 2e-76

own update 2001.11.12
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

D16417|D16417.1 Dictyostelium discoideum mRNA. 232 2e-95 3
CC245494|CC245494.1 CH261-54C11_Sp6.1 CH261 Gallus gallus genomic clone CH261-54C11, DNA sequence. 56 3e-04 1
L06178|L06178.1 Apis mellifera ligustica complete mitochondrial genome. 38 0.002 6
BM094544|BM094544.1 saj17c12.y1 Gm-c1066 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1066-2832 5', mRNA sequence. 52 0.005 1
AX348899|AX348899.1 Sequence 357 from Patent WO0202807. 34 0.014 4
AX344490|AX344490.1 Sequence 337 from Patent WO0200926. 34 0.014 4
AB030651|AB030651.1 Felis catus mRNA for B-lymphocyte activation antigen B7-1 (CD80), complete cds. 38 0.038 2
L43882|L43882.1 Ixodes scapularis (isolate 2, strain Georgia 2) mitochondrial 12S ribosomal RNA (12S rDNA) gene fragment. 48 0.073 1
BH564896|BH564896.1 BOHIQ68TR BOHI Brassica oleracea genomic clone BOHIQ68, DNA sequence. 48 0.073 1
AF267210|AF267210.1 Candidatus Carsonella ruddii natural-host Ctenarytaina spatulata ATP synthase alpha subunit (atpA) gene, partial cds; ATP synthase gamma subunit (atpG) gene, complete cds; and ATP synthase beta subunit (atpD) gene, partial cds. 36 0.14 3
dna update 2003. 8.12
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 252,256,355
protein update 2009. 6.15
PSORT

psg: 0.69 gvh: 0.22 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.39 mip: 0.07
nuc: 1.95 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

72.0 %: nuclear
12.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for SSM491 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSM491Z
3' end seq.
>SSM491Z.Seq
----------TTTAAAAAAAAAAAAAAAAGAAAAAAAAAAAATATTAAAATATTTTTTTT
AAAATCAATTTTAAATATAAATAATAATGTTTTTTTTTTTTTTATAAAAAAAAGAAAGAA
AAAAAGAAAAAAAAAAAAAAAAGAAAAAAAGAATTTAAAAAAAAAAAAAAAAATAGAAAA
AAAAAAGTTAAAGATGTAATGGTAAAACCAAAGTAGAATGGAAATCCAAAAAAAGATCTT
TATAAATTGCCACTATAATCAATGTATAGATATTGTTCCGTCTGTGTGTATGCTGTTAGG
TCCAGTTTGCTCTTTAGTTACTTTAATTTAAATCTATATTGTAATTTTTATAAAAAAAA
Length of 3' end seq. 349
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -