SSM482
Library SS
(Link to library)
Clone ID SSM482
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14349-1
Original site URL
Representative seq. ID SSM482E
(Link to Original site)
Representative DNA sequence
>SSM482 (SSM482Q) /CSM/SS/SSM4-D/SSM482Q.Seq.d/
TAAATAAAAAACTATATATAAAAAATGTCTTCAGGTATTGCTTTAGCTCCAAACTGCGTT
TCAACCTTCAACGATTTAAAGTTAGGTCGTAAATATGGTGGTATCATCTACAGAATCTCT
GACGATTCAAAAGAAATCATTGTTGACTCCACCTTACCAGCTGGTTGTTCATTCGATGAA
TTCACCAAATGTCTCCCAGAAAACGAATGTAGATACGTTGTCCTCGACTATCAATACAAA
GAAGAAGGTGCCCAAAAGAGCAAAATCTGTTTTGTTGCCTGGTGCCCAGATACCGCCAAC
ATTAAAAAGAAAATGATGGCCACCTCATCAAAAGACTCTTTACGTAAAGCCTGTGTTGGT
ATCCAAGTTGAAATCCAAGGTACCGATGCCTCTGAAGTCAAAGATTCATGTTTCTATGAA
AAATGTACCAAAATCTAAATAATTTGAAAAAATTTAAAAAAAAAAAAAA
sequence update 1998. 3.11
Translated Amino Acid sequence
*iknyi*KMSSGIALAPNCVSTFNDLKLGRKYGGIIYRISDDSKEIIVDSTLPAGCSFDE
FTKCLPENECRYVVLDYQYKEEGAQKSKICFVAWCPDTANIKKKMMATSSKDSLRKACVG
IQVEIQGTDASEVKDSCFYEKCTKI*ii*knlkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
*iknyi*KMSSGIALAPNCVSTFNDLKLGRKYGGIIYRISDDSKEIIVDSTLPAGCSFDE
FTKCLPENECRYVVLDYQYKEEGAQKSKICFVAWCPDTANIKKKMMATSSKDSLRKACVG
IQVEIQGTDASEVKDSCFYEKCTKI*ii*knlkkkk


Frame B:
k*ktiykkclqvll*lqtafqpsti*s*vvnmvvsstesltiqkkslltppyqlvvhsmn
spnvsqktnvdtlsstintkkkvpkraksvllpgaqipptlkrk*wpphqktlyvkpvlv
sklkskvpmplkskihvsmknvpksk*feki*kkkk


Frame C:
nkklyiknvfrycfssklrfnlqrfkvrs*iwwyhlqnl*rfkrnhc*lhltswlfir*i
hqmsprkrm*ircprlsiqrrrcpkeqnlfcclvpryrqh*kendghlikrlft*slcwy
ps*npryrcl*sqrfmfl*kmyqnlnnlkkfkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSJ890 (VSJ890Q) /CSM/VS/VSJ8-D/VSJ890Q.Seq.d/ 835 0.0
VSJ584 (VSJ584Q) /CSM/VS/VSJ5-D/VSJ584Q.Seq.d/ 835 0.0
VSJ550 (VSJ550Q) /CSM/VS/VSJ5-C/VSJ550Q.Seq.d/ 835 0.0
VSJ437 (VSJ437Q) /CSM/VS/VSJ4-B/VSJ437Q.Seq.d/ 835 0.0
VSJ243 (VSJ243Q) /CSM/VS/VSJ2-B/VSJ243Q.Seq.d/ 835 0.0
VSI135 (VSI135Q) /CSM/VS/VSI1-B/VSI135Q.Seq.d/ 835 0.0
VSG665 (VSG665Q) /CSM/VS/VSG6-C/VSG665Q.Seq.d/ 835 0.0
VSD383 (VSD383Q) /CSM/VS/VSD3-D/VSD383Q.Seq.d/ 835 0.0
VSD320 (VSD320Q) /CSM/VS/VSD3-A/VSD320Q.Seq.d/ 835 0.0
VSA646 (VSA646Q) /CSM/VS/VSA6-B/VSA646Q.Seq.d/ 835 0.0

own update 2001.11.12
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

D37981|D37981.1 Dictyostelium discoidium DDCOF2 gene for cofilin, complete cds. 835 0.0 1
D37980|D37980.1 Dictyostelium discoidium DDCOF1 gene for cofilin, complete cds (exon1-2). 833 0.0 1
X04004|X04004.1 Dictyostelium discoideum mRNA for contact site A (csA) protein. 168 4e-38 1
AC096355|AC096355.12 Rattus norvegicus clone CH230-34N3, WORKING DRAFT SEQUENCE, 3 unordered pieces. 44 0.99 2
AC135132|AC135132.2 Rattus norvegicus clone CH230-240G18, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 44 1.5 1
CB784341|CB784341.1 AMGNNUC:NRHY4-00139-G3-A W Rat hypothalamus (10464) Rattus norvegicus cDNA clone nrhy4-00139-g3 5', mRNA sequence. 44 1.5 1
CB707648|CB707648.1 AMGNNUC:NRHY4-00139-E3-A W Rat hypothalamus (10464) Rattus norvegicus cDNA clone nrhy4-00139-e3 5', mRNA sequence. 44 1.5 1
BQ108127|BQ108127.1 shrpID000306 LvG Litopenaeus vannamei cDNA, mRNA sequence. 44 1.5 1
CB579150|CB579150.1 AMGNNUC:NRHY7-00010-A11-A nrhy7 (10850) Rattus norvegicus cDNA clone nrhy7-00010-a11 5', mRNA sequence. 44 1.5 1
J05087|J05087.1 Rat calmodulin-sensitive plasma membrane Ca2+-transporting ATPase (PMCA3) mRNA, complete cds. 44 1.5 1
dna update 2003. 8.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54706) RecName: Full=Cofilin-1; &D37980_1(D37980|pid:none) &D... 280 9e-75
(P37167) RecName: Full=Actophorin; &M93361_1(M93361|pid:none) 130 1e-29
FM992692_38(FM992692|pid:none) Candida dubliniensis CD36 chromos... 125 5e-28
(Q96VU9) RecName: Full=Cofilin; AltName: Full=Actin-depolymerizi... 125 6e-28
AY428595_1(AY428595|pid:none) Helianthus annuus clone HA10-7 put... 123 2e-27
CP000501_299(CP000501|pid:none) Pichia stipitis CBS 6054 chromos... 120 2e-26
(Q9HF97) RecName: Full=Cofilin; AltName: Full=Actin-depolymerizi... 119 4e-26
(Q6CQ22) RecName: Full=Cofilin; AltName: Full=Actin-depolymerizi... 119 4e-26
CU928179_306(CU928179|pid:none) Zygosaccharomyces rouxii strain ... 116 2e-25
(Q03048) RecName: Full=Cofilin; AltName: Full=Actin-depolymerizi... 116 2e-25
protein update 2009. 7. 9
PSORT

psg: 0.91 gvh: 0.46 alm: 0.50 top: 0.60 tms: 0.00 mit: 0.30 mip: 0.06
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
32.0 %: cytoplasmic
12.0 %: mitochondrial
8.0 %: vacuolar
4.0 %: peroxisomal
4.0 %: endoplasmic reticulum

>> prediction for SSM482 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSM482E
Full length Seq.
>SSM482E.Seq
TAAATAAAAAACTATATATAAAAAATGTCTTCAGGTATTGCTTTAGCTCCAAACTGCGTT
TCAACCTTCAACGATTTAAAGTTAGGTCGTAAATATGGTGGTATCATCTACAGAATCTCT
GACGATTCAAAAGAAATCATTGTTGACTCCACCTTACCAGCTGGTTGTTCATTCGATGAA
TTCACCAAATGTCTCCCAGAAAACGAATGTAGATACGTTGTCCTCGACTATCAATACAAA
GAAGAAGGTGCCCAAAAGAGCAAAATCTGTTTTGTTGCCTGGTGCCCAGATACCGCCAAC
ATTAAAAAGAAAATGATGGCCACCTCATCAAAAGACTCTTTACGTAAAGCCTGTGTTGGT
ATCCAAGTTGAAATCCAAGGTACCGATGCCTCTGAAGTCAAAGATTCATGTTTCTATGAA
AAATGTACCAAAATCTAAATAATTTGAAAAAATTTAAAAAAAAAAAAAA
Length of full length seq. 469